GBrowse Details

Vigan.10G065300.01

Basic Information:
Name: Vigan.10G065300.01
Multiple alignment
Variant Information
Position: Chr10:6990350..6992473 (+ strand)
Length: 2124
Functional Information:
Description: Similar to Uncharacterized protein. [V4SVK6, Citrus clementina.]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L34Ae (IPR008195)
Ribosomal protein L34e, conserved site (IPR018065)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:52.26,112.60,120.39,92.58,189.11,352.65,209.38,105.27
Automatic updates:
Name: NM_001250433 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499882 (LOC100499882), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251243 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499931 (LOC100499931), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001349631 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 60S ribosomal protein L34 (LOC100306077), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001360426 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 60S ribosomal protein L34 (LOC100779148), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:6990350..6990493 (+ strand)
Length: 144
Type: five_prime_UTR
Position: Chr10:6990494..6990572 (+ strand)
Length: 79
Type: CDS
Position: Chr10:6990690..6990769 (+ strand)
Length: 80
Type: CDS
Position: Chr10:6991569..6991678 (+ strand)
Length: 110
Type: CDS
Position: Chr10:6991776..6991869 (+ strand)
Length: 94
Type: CDS
Position: Chr10:6991870..6992473 (+ strand)
Length: 604
Type: three_prime_UTR

>Vigan.10G065300.01 class=Sequence position=Chr10:6990350..6992473 (+ strand)
TGACATTGTC TTTAGAGCCG TTAGATGTAG GGCATCAAAA CAGAAGCCCA CAATCCCCTC TTATAGGTTC TTGCGGCGCA
TCTTCTTCTT TCTTCGGTAA ACCCTAACAA CACAGACGCC GGGAGCAGAA CTCGAAGAAA GAAGATGGTG CAGCGTCTCA
CCTATCGCAA GCGGCACAGT TATGCCACAA AGTCCAACCA GCACAGGGTT GTCAAGACCC CTGGTAATTT ATTCCATTGG
GATATTCATT CTTTGATTAT GCTTCCGATC CAAACCTTTT TGTTTCTGAT TTCAATTCGA TTCTAACGGG TCTGTGTTTG
GTGTTGCTGA TATAATGCAG GTGGGAAGCT CGTTTATCAG AGCACCAAGA AGAGGGCTAG CGGACCCAAG TGCCCCGTCA
CTGGCAAGAG GATTCAGGGG GTGTGCTTTC TGTTACCCTG TCAATTCCCA TTTTTTTTAT GATGTGTAAT TTTCAGTGTT
CTGTTATTGA CTTATTTTGT TTGATGTTTT TTTTTCTCTC TTTTTATATG TTTCTTTGCG TTGGACTAGC TATAAACGTT
GTTAATGATG GTTTATTAGA TTCAAACCAG CTAGCTATAA ACGTCGTTAA TGATGATTTA TTAGATTCAA ACCAACTGGT
GTGTATAATT GAACTTCGTG GGACTAAAAG GCGAACTATT GGGCATTAGT GCGTACAGGG GAGATGGTGG AACTTCTACA
TGATCATAGT TTGGATTTTG ATTTTTGTGT AATTGGCATG TGATAGTTCA GATTTATTGT TATTGCAATA TGTTAGGTAT
TCAATGTTTG GCCAGATGGG TATATGTTCT TTCTTGCTTC AAAACTTGTA TATATTAGAG TTTTATCTTT ATTATGTTTT
ACCTTCCGAG CCTGTGAACA GGGTTATGAA TGTTTTAGGG TATTTGAAAC CTTGTAAGAT TGGCTTTTGA TGAATATTTT
TTATTGTAAT TTGGTTGATG AAATGTGGAA TGATGTGTGG TTCAGGTCAG TTTAGTTGGG TGGCATTCCG TGGATATATG
ATACAAACTG TTCTGTACGG TGTATGATTC TCCTTAGTGA TTATTCTATT TAAGTATATC TCTAAGCATT GGATTACTAG
GTGTTTTTTG TATTATAGAG GCATGCTAAG TTTCCTGTGT TTTGATTAAA TTGAATAACC TTTTAGCTCT GAATTCTAAA
TTTTGCCTGA TAATTGCAGA TTCCACACTT GAGGCCTGCG GAATACAAGA GGTCAAGGTT ACCTAGAAAC CGTAGGACTG
TAAACCGTGC ATATGGTGGA GTTTTGTCCG GAAGTGCTGT CAGGGAGAGG TTTGTCTTAA CTTTTAACAG CTAGTTTATA
TTTATAATAA CTTTTTTGAT TTAATTGTTT GGTCTGATTT GGCTTATATT TGTCTCTGGT CTACAGGATT ATCCGAGCTT
TCTTAGTTGA GGAGCAGAAG ATTGTGAAGA AGGTCTTGAA GATCCAGAAG GCCAAGGAAA AGCAGGCCTT GAAGGGTTAA
ATTTGGACAG CAAAACGAGA CACATCTTTT TGGAGGGCTG TTAGGTTTGA GTGGTTATAG TATATCACAA GTTTTATTAG
AGCTGTTAAT TGTGTTTTTA TTATTTGGTT TGATTTGAAC TCATTCTAGA GCAATTGTTA ATTTCGTCGA CAATGCCATT
CTGATACAGT TTTGTTTGTC TCAATTTTCT CGTAATGGTT TATTTATGTT TGTCATGTTT CTGCAAATAG GACTTCGAAA
TTCTACGCGC ATTGTGATAT ATCTCAATTC TGGCTGCATC TCCTTCAGCT ATTAAAATGC TTAATTTTTG CTAGGAACAA
TATTTCCTTG ATGTTGGTAA TCGGTGGAGG TTTATGTTAC AGTTTGTTGG ATAAACAGCA TTATTTTCTG TTGGATTGCT
GAACTTGAAC ATGTGCCAAG AATAATGGCT ATTTGAATGA CAACGATTTC TTAAAAAAAA AATATCATCA CCAGTGACGG
GTTTAATGTA AAAAAGTTGA AGTATTCGAT AGCCATCACA CATGTCAGGT AGGTTTTTCA CATGTTTACC TTTCGTCATT
TAGAACATCA AAGACTATTA TTCTCTTAGT TTGTTATTAC CAGC

>Vigan.10G065300.01
TGACATTGTC TTTAGAGCCG TTAGATGTAG GGCATCAAAA CAGAAGCCCA CAATCCCCTC TTATAGGTTC TTGCGGCGCA
TCTTCTTCTT TCTTCGGTAA ACCCTAACAA CACAGACGCC GGGAGCAGAA CTCGAAGAAA GAAGATGGTG CAGCGTCTCA
CCTATCGCAA GCGGCACAGT TATGCCACAA AGTCCAACCA GCACAGGGTT GTCAAGACCC CTGGTGGGAA GCTCGTTTAT
CAGAGCACCA AGAAGAGGGC TAGCGGACCC AAGTGCCCCG TCACTGGCAA GAGGATTCAG GGGATTCCAC ACTTGAGGCC
TGCGGAATAC AAGAGGTCAA GGTTACCTAG AAACCGTAGG ACTGTAAACC GTGCATATGG TGGAGTTTTG TCCGGAAGTG
CTGTCAGGGA GAGGATTATC CGAGCTTTCT TAGTTGAGGA GCAGAAGATT GTGAAGAAGG TCTTGAAGAT CCAGAAGGCC
AAGGAAAAGC AGGCCTTGAA GGGTTAAATT TGGACAGCAA AACGAGACAC ATCTTTTTGG AGGGCTGTTA GGTTTGAGTG
GTTATAGTAT ATCACAAGTT TTATTAGAGC TGTTAATTGT GTTTTTATTA TTTGGTTTGA TTTGAACTCA TTCTAGAGCA
ATTGTTAATT TCGTCGACAA TGCCATTCTG ATACAGTTTT GTTTGTCTCA ATTTTCTCGT AATGGTTTAT TTATGTTTGT
CATGTTTCTG CAAATAGGAC TTCGAAATTC TACGCGCATT GTGATATATC TCAATTCTGG CTGCATCTCC TTCAGCTATT
AAAATGCTTA ATTTTTGCTA GGAACAATAT TTCCTTGATG TTGGTAATCG GTGGAGGTTT ATGTTACAGT TTGTTGGATA
AACAGCATTA TTTTCTGTTG GATTGCTGAA CTTGAACATG TGCCAAGAAT AATGGCTATT TGAATGACAA CGATTTCTTA
AAAAAAAAAT ATCATCACCA GTGACGGGTT TAATGTAAAA AAGTTGAAGT ATTCGATAGC CATCACACAT GTCAGGTAGG
TTTTTCACAT GTTTACCTTT CGTCATTTAG AACATCAAAG ACTATTATTC TCTTAGTTTG TTATTACCAG C

>Vigan.10G065300.01
ATGGTGCAGC GTCTCACCTA TCGCAAGCGG CACAGTTATG CCACAAAGTC CAACCAGCAC AGGGTTGTCA AGACCCCTGG
TGGGAAGCTC GTTTATCAGA GCACCAAGAA GAGGGCTAGC GGACCCAAGT GCCCCGTCAC TGGCAAGAGG ATTCAGGGGA
TTCCACACTT GAGGCCTGCG GAATACAAGA GGTCAAGGTT ACCTAGAAAC CGTAGGACTG TAAACCGTGC ATATGGTGGA
GTTTTGTCCG GAAGTGCTGT CAGGGAGAGG ATTATCCGAG CTTTCTTAGT TGAGGAGCAG AAGATTGTGA AGAAGGTCTT
GAAGATCCAG AAGGCCAAGG AAAAGCAGGC CTTGAAGGGT TAA

>Vigan.10G065300.01
MVQRLTYRKR HSYATKSNQH RVVKTPGGKL VYQSTKKRAS GPKCPVTGKR IQGIPHLRPA EYKRSRLPRN RRTVNRAYGG
VLSGSAVRER IIRAFLVEEQ KIVKKVLKIQ KAKEKQALKG *