GBrowse Details

Vigan.10G046300.01

Basic Information:
Name: Vigan.10G046300.01
Multiple alignment
Variant Information
Position: Chr10:4643538..4646757 (+ strand)
Length: 3220
Functional Information:
Description: Similar to Sporulation protein RMD1. [G7JWQ1, Medicago truncatula]
InterPro: Protein of unknown function DUF155 (IPR003734)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.92,7.05,5.57,7.49,5.11,2.25,7.60,4.43
Arabidopsis thaliana homolog: AT1G69380.1
Automatic updates:
Name: NM_001255804 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100815826 (LOC100815826), mRNA; nuclear gene for mitochondrial product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:4643538..4643630 (+ strand)
Length: 93
Type: five_prime_UTR
Position: Chr10:4643631..4643857 (+ strand)
Length: 227
Type: CDS
Position: Chr10:4644508..4644622 (+ strand)
Length: 115
Type: CDS
Position: Chr10:4645121..4645280 (+ strand)
Length: 160
Type: CDS
Position: Chr10:4645372..4645520 (+ strand)
Length: 149
Type: CDS
Position: Chr10:4645614..4645765 (+ strand)
Length: 152
Type: CDS
Position: Chr10:4645991..4646105 (+ strand)
Length: 115
Type: CDS
Position: Chr10:4646359..4646496 (+ strand)
Length: 138
Type: CDS
Position: Chr10:4646497..4646757 (+ strand)
Length: 261
Type: three_prime_UTR

>Vigan.10G046300.01 class=Sequence position=Chr10:4643538..4646757 (+ strand)
AAAAGGGAAA AAAAAAGTCA CCACTCAAAG CAAAAGCAAA GAGAAAAAAA AAAGCAGAAA ACCATAGGAA GAAGACCCTC
GTCCTCTCAG CGAATGGGCG GAAGATGGAA AACCTTCTCA CTGTTCTATA ATCGCTTAAC CAGTTCTTCA TCATCTTCTT
CTTCCTCTTC TTCCAAATCC CACTATCTCT CTTTCAACCG CTCTCTCTCT CTCGCCGCTG CACCTTCCGA AATACCCGAC
CCGGATCCAA TCGGGTTAAG TGCCCCGGAC ATCGACCCCA CCGTCAAAAT CCCCGTCAAA GCTTATTTCC TCTCTACCAG
GTACCCCACT ATCCTATCTT ATTCAAGTTC GATACTTTCG ATGGCCCCTT TTTGTATCTT GTGTTTTGTG AAAATGGGTC
GTTCTCGGAC GCTCGTTTAT GCGATGTTAC TTATTACTTC CGCTACTGTT CCATTTAAGA GGAGAAGACC ATGCCGTGTG
GGAGTTGAAA TTTGTACTTC TTAGTTTTAA TCTTTGATTT GGACTTTAGA GTTTTATGAT TATTGTTTTT GTTTTAATTC
ATTTTGATGT GTAAAATTTG CAGCTTACTT TGTTATTTGT ATTTAAAAAT TTATAGCTTT CGTGTTTCTA GTTGTCCTGT
ATTTTACTAT AATACTACTG TTTAATGTTA GATTTAGAAG ACTCCGTGTG CGTTTGTGCG GGGACTGTAG TTTTGATGCA
TTTATTTATC AGATTGGGAT TTTGGAGTGC TTTTTTAGGT TGTTGTATTA AAACAATAGT TTTAATCCTT GTATATGATT
TATAGATTAT CAGGTTTTCT GAGAATTTTT TGTTTTTTTA TTTTACATTG ATGCATTCCA TTTTTCCTTG TTTTCTGGGT
TTGAATTGAA CCCTTTCCTC TCACATGTCT TTTTGTTGTC CTGTTTTTGT TCTCTACGAT TTGGCTGTCT CAGATTCATA
ATTTTGGCAG TATAAATTTG AAGGGCATCC AGGCTGATAA TCACAGAAAC ATTGTTCCTC CCTCTTCTCG CTCATCTTCA
AACTATGTTG CTCTACGCTT CTGTGACTTT AATTTGAATG CTAAAGTAAG GTTTATTATT ATTTTTATTT TTCTCAATAG
CCTGTGTTTC TATATAAATT AGCATGTCAC TAAATAGTTC TTAAATATCT TTATTGAGTC TTTTTGTGTC CATCATTTTT
AGGATACTTG GTTTATTGTT GAAGCTCCAC GTGGAGCTCC ATGCTAATGT CAAATGTCCA GACACTAGAT TGGGATTATG
AGCCATGAGG GTAGATTTTT ATTAGAATCG TGTCATAGAA ATTATGTGTG CATTTGAAGG TTACGGGAAT GATAAGAGAA
AATTCAAGCT ACATATTCTG ATTTATGTAG CCTGAGCTGC ATCATAAATA ACGATATTTT GTTTATCGAT GATGAGTAAA
TTAATTCACT GTATCATCAA GGAAAATAAT ACTCCCGAGT TAAAAGAAGA TTCAAGTGTT AATAATGACA AAATCTGTGA
CTAAATTGTA TAGTAACATG ACTGATTTAA CAAGGTCTGA ACAACTTTAG GCGTTTGATT CAGGGACCTG GATTTCACGT
GAAAGCAAGC AACTGTCAAT ACATGGTTGT ATATCAGTAT GGGTCAGCTG TCTTGTTCAA TGTTGAGGAT CATGAAGTGG
AAGGTTACCT GGAATTAGTT AAGAGGCATG CATCTGGTTT ACTTAGAGAG ATGAGAAAAG ATGGTAAGTT TCTTCAAAGA
AACCAATTAG TCATGAAGTT TTTCTGAATC CTGTTGTGTA TATAGTTAAT ATGTTTCTGT TTTTGTGTGA TTAGATTATG
CAATAAAGGA GAAGCCATTG TTAGTTGAGG ACATGCAAGG AGGTCCAGAC TACATAGTTC TCAAATCGTT GGATACAGAT
GGTATCCGCA TAATTGGAAG TGTACTGGGA CAAAGCATAG CTCTGGATTA TTTTGTCTCG CAGGTTAATA TTTGGCAAAC
GCCATCTTAT TTCCTAAAAG ACAACCCTTA AAATGTTACC ATTGAATATT TGACATGTGT TCTCTCTTAT TATCAGGTTG
ATGGTTTAGT TGAAGAGTTC GCCGGCATAA ACCGAGGAAT GGAGAAAACT GGAACCTTCA CTATGGATAA GAAGAAACTA
CTTCAGCTTG TTGGGAAGGC TAACTCAAAT TTGGCCGATG TGATTCTTAA AGTTGGGCTC TTTGAGAGGT ATTTTTGTCC
TGTTTTTAGG CTTAGAAAAA TATGCATATG CTGATGTAAT AATATATTGA AAATTTCTGA TTATAGTATA TCCCCTAGCC
AACCTCACTT AGTTGGAAAG TACTTTTGTT GTAGTATCCG AAAAGATTTC AAATATTTGG TTTTTGGAAT AATTTCATCC
TAGTCAACAG TTAGAAGATT TGGTTAATGT TTTATTGTGG ATTGATTAAT CAGATCCGAA ATTGCTTGGA GGGATGCTAA
GTATGCTCAA ATATATGAGT ATCTTAGGGA GGAGTATGAA GTTGCACAAC GCTTTGGAAA CCTGGATTTC AAATTGAAAT
TCGTAGAGGT ATTTCTGCCC ATTATTTATA TCCATTTGAC CCTCTATAAA GTATTAGTAA TTTCATCTAA ACAATGCATT
TGAAAATTGT TAGAATATGA GCCCATGTGA TCAACAATAA TTTGCTTAAA ATTATGCACA AATCTTCAGC TAGATGCACA
CCATTTTTGC CTGTATATTA AACATTGTAT TTGAGGTTAG TTATCATGTT CAAATGATGT TGTTGTATTA AGGCTTCTTA
CGTCGATTTG GTTGTTTGCA GCACAATATT CATTTTCTTC AAGAAGTTCT GCAGAACAGA AAATCAGATT TCTTGGAATG
GTGCATTATT GGTTTATTGA CTATTGAAAA TGTTCTATCA TTGTATGAGA TTCTTCGAGC TACAAATTCA GTTTCTTAGC
AAATAGTAAG AAGCTGAAGC TAGATTAGTT TGTAGTAACA ATTCTTGCAA TTTTTTACCA ATGAAAATTT TGGCCTTGGT
ATTTAACAAA TAAATCCAAA TATTCAAGAC CCATTGAACT GTATTATATC TTTTGGAAAC TGTGATGAAA AAAAAAAGGA
TGCAGGAGCA TCTAGTTCTA TCACAGATTG TAGAACTAGT TTTAATGACG TAAGGATCAT TAATTATTTG CGTTGTTTTA
ACGCAAGGAA CGTCTGCAAA 

>Vigan.10G046300.01
AAAAGGGAAA AAAAAAGTCA CCACTCAAAG CAAAAGCAAA GAGAAAAAAA AAAGCAGAAA ACCATAGGAA GAAGACCCTC
GTCCTCTCAG CGAATGGGCG GAAGATGGAA AACCTTCTCA CTGTTCTATA ATCGCTTAAC CAGTTCTTCA TCATCTTCTT
CTTCCTCTTC TTCCAAATCC CACTATCTCT CTTTCAACCG CTCTCTCTCT CTCGCCGCTG CACCTTCCGA AATACCCGAC
CCGGATCCAA TCGGGTTAAG TGCCCCGGAC ATCGACCCCA CCGTCAAAAT CCCCGTCAAA GCTTATTTCC TCTCTACCAG
TATAAATTTG AAGGGCATCC AGGCTGATAA TCACAGAAAC ATTGTTCCTC CCTCTTCTCG CTCATCTTCA AACTATGTTG
CTCTACGCTT CTGTGACTTT AATTTGAATG CTAAAGGACC TGGATTTCAC GTGAAAGCAA GCAACTGTCA ATACATGGTT
GTATATCAGT ATGGGTCAGC TGTCTTGTTC AATGTTGAGG ATCATGAAGT GGAAGGTTAC CTGGAATTAG TTAAGAGGCA
TGCATCTGGT TTACTTAGAG AGATGAGAAA AGATGATTAT GCAATAAAGG AGAAGCCATT GTTAGTTGAG GACATGCAAG
GAGGTCCAGA CTACATAGTT CTCAAATCGT TGGATACAGA TGGTATCCGC ATAATTGGAA GTGTACTGGG ACAAAGCATA
GCTCTGGATT ATTTTGTCTC GCAGGTTGAT GGTTTAGTTG AAGAGTTCGC CGGCATAAAC CGAGGAATGG AGAAAACTGG
AACCTTCACT ATGGATAAGA AGAAACTACT TCAGCTTGTT GGGAAGGCTA ACTCAAATTT GGCCGATGTG ATTCTTAAAG
TTGGGCTCTT TGAGAGATCC GAAATTGCTT GGAGGGATGC TAAGTATGCT CAAATATATG AGTATCTTAG GGAGGAGTAT
GAAGTTGCAC AACGCTTTGG AAACCTGGAT TTCAAATTGA AATTCGTAGA GCACAATATT CATTTTCTTC AAGAAGTTCT
GCAGAACAGA AAATCAGATT TCTTGGAATG GTGCATTATT GGTTTATTGA CTATTGAAAA TGTTCTATCA TTGTATGAGA
TTCTTCGAGC TACAAATTCA GTTTCTTAGC AAATAGTAAG AAGCTGAAGC TAGATTAGTT TGTAGTAACA ATTCTTGCAA
TTTTTTACCA ATGAAAATTT TGGCCTTGGT ATTTAACAAA TAAATCCAAA TATTCAAGAC CCATTGAACT GTATTATATC
TTTTGGAAAC TGTGATGAAA AAAAAAAGGA TGCAGGAGCA TCTAGTTCTA TCACAGATTG TAGAACTAGT TTTAATGACG
TAAGGATCAT TAATTATTTG CGTTGTTTTA ACGCAAGGAA CGTCTGCAAA 

>Vigan.10G046300.01
ATGGGCGGAA GATGGAAAAC CTTCTCACTG TTCTATAATC GCTTAACCAG TTCTTCATCA TCTTCTTCTT CCTCTTCTTC
CAAATCCCAC TATCTCTCTT TCAACCGCTC TCTCTCTCTC GCCGCTGCAC CTTCCGAAAT ACCCGACCCG GATCCAATCG
GGTTAAGTGC CCCGGACATC GACCCCACCG TCAAAATCCC CGTCAAAGCT TATTTCCTCT CTACCAGTAT AAATTTGAAG
GGCATCCAGG CTGATAATCA CAGAAACATT GTTCCTCCCT CTTCTCGCTC ATCTTCAAAC TATGTTGCTC TACGCTTCTG
TGACTTTAAT TTGAATGCTA AAGGACCTGG ATTTCACGTG AAAGCAAGCA ACTGTCAATA CATGGTTGTA TATCAGTATG
GGTCAGCTGT CTTGTTCAAT GTTGAGGATC ATGAAGTGGA AGGTTACCTG GAATTAGTTA AGAGGCATGC ATCTGGTTTA
CTTAGAGAGA TGAGAAAAGA TGATTATGCA ATAAAGGAGA AGCCATTGTT AGTTGAGGAC ATGCAAGGAG GTCCAGACTA
CATAGTTCTC AAATCGTTGG ATACAGATGG TATCCGCATA ATTGGAAGTG TACTGGGACA AAGCATAGCT CTGGATTATT
TTGTCTCGCA GGTTGATGGT TTAGTTGAAG AGTTCGCCGG CATAAACCGA GGAATGGAGA AAACTGGAAC CTTCACTATG
GATAAGAAGA AACTACTTCA GCTTGTTGGG AAGGCTAACT CAAATTTGGC CGATGTGATT CTTAAAGTTG GGCTCTTTGA
GAGATCCGAA ATTGCTTGGA GGGATGCTAA GTATGCTCAA ATATATGAGT ATCTTAGGGA GGAGTATGAA GTTGCACAAC
GCTTTGGAAA CCTGGATTTC AAATTGAAAT TCGTAGAGCA CAATATTCAT TTTCTTCAAG AAGTTCTGCA GAACAGAAAA
TCAGATTTCT TGGAATGGTG CATTATTGGT TTATTGACTA TTGAAAATGT TCTATCATTG TATGAGATTC TTCGAGCTAC
AAATTCAGTT TCTTAG

>Vigan.10G046300.01
MGGRWKTFSL FYNRLTSSSS SSSSSSSKSH YLSFNRSLSL AAAPSEIPDP DPIGLSAPDI DPTVKIPVKA YFLSTSINLK
GIQADNHRNI VPPSSRSSSN YVALRFCDFN LNAKGPGFHV KASNCQYMVV YQYGSAVLFN VEDHEVEGYL ELVKRHASGL
LREMRKDDYA IKEKPLLVED MQGGPDYIVL KSLDTDGIRI IGSVLGQSIA LDYFVSQVDG LVEEFAGINR GMEKTGTFTM
DKKKLLQLVG KANSNLADVI LKVGLFERSE IAWRDAKYAQ IYEYLREEYE VAQRFGNLDF KLKFVEHNIH FLQEVLQNRK
SDFLEWCIIG LLTIENVLSL YEILRATNSV S*