GBrowse Details

Vigan.10G044500.01

Basic Information:
Name: Vigan.10G044500.01
Multiple alignment
Variant Information
Position: Chr10:4434370..4439697 (- strand)
Length: 5328
Functional Information:
Description: Similar to Vesicle transport v-SNARE. [G7JWJ8, Medicago truncatula]
GO: Biological Process: intracellular protein transport (GO:0006886)
Biological Process: vesicle-mediated transport (GO:0016192)
Cellular Component: membrane (GO:0016020)
Molecular Function: protein binding (GO:0005515)
InterPro: Target SNARE coiled-coil domain (IPR000727)
Vesicle transport v-SNARE, N-terminal (IPR007705)
t-SNARE (IPR010989)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:89.36,47.42,14.72,20.06,23.86,22.98,44.21,19.26
Arabidopsis thaliana homolog: AT1G26670.1
Automatic updates:
Name: NM_001248595 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500007 (LOC100500007), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251190 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527319 (LOC100527319), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:4434370..4434750 (- strand)
Length: 381
Type: three_prime_UTR
Position: Chr10:4434751..4434903 (- strand)
Length: 153
Type: CDS
Position: Chr10:4435149..4435319 (- strand)
Length: 171
Type: CDS
Position: Chr10:4438455..4438643 (- strand)
Length: 189
Type: CDS
Position: Chr10:4438745..4438803 (- strand)
Length: 59
Type: CDS
Position: Chr10:4439475..4439571 (- strand)
Length: 97
Type: CDS
Position: Chr10:4439572..4439697 (- strand)
Length: 126
Type: five_prime_UTR

>Vigan.10G044500.01 class=Sequence position=Chr10:4434370..4439697 (- strand)
ACCCTTTCCC ATTCAAATTA GGGTAAAATT GAATCATCCA TCACTTTGCA TTCATGCAGT TTCTATTTTT GTTTTCCAAT
TTTCAATTTT AATTTCTTCA TCTTTTCGAT CAAAGGGTGT GGCAAGATGA GTGAGGTTTT CGAAGGGTAC GAGCGCCAGT
ACTGTGAGCT CTCTGCTAAT CTCTCCCGCA AATGTAGTTC AACCTCGCTT GTTTCTGATC AAGGTGCCTT CAAAATCCTA
ATTTTATTGT CGTTTAATTC ACCCCTTTTT TCGTTTATCG CTTATTTCTG TGTTGCGTTT GGTGTCTTGA ACTGCCCCTG
TTGCTTTCTT GCTGTGATTA GCTCGGAACG CATCATAGGA TGCATATCTG GCTCAAGAGT TCGTGTGTTG GGAAATGAAT
TTTCTCTTAG CTGAACCCCT CATAAACCAT GGCTATGAGA AGGGAAACTA GGGTTTATTA TTCAAAATTT GTTGTGCTTG
ATTGTTTAAG TGTCAAGATT TGGTCAAAGC TAGTAAAAGT CGTTGTTTTG TCGTGTTCAA TGATTTTTGT GCGACTTCTA
TGTGATTCGA TGAAGTTTAC TATATTGTTG GTCAGTTAGG CTAATTATAC TACCGAGACT AGTCATGTTC TTGGATTTCT
CAGATGTTTG CTTGTTGCTG TTGTCCTAAA CGGTGATCCC TGGTGACATC GATGGTTCAC GTGTTTCTTT TGTTGATAAT
AGTGTTTAGG TTACTTGATG AAAGTGAAAA CTTATAAAAT TTTTTGGAGG ATTTTATCTA CTGTGCTTCG AGCCAGACGT
TTTCTGGATT CTGCTTATGT AACATGAAGA TGTATGATGG CTTATTATTT AATGTTAAAT TTTATGTACT GATTTTTTAA
TCAACACTAT TCAGAACAGA AGCTGCAGAA GTTTTCTGAG ATCAAAGCAG GACTGGATGA CGCTGATGTC CTGGTACTAA
GATGAATGTT TTCTTATGTG TTCGTGCTAT ATTTTTTTTT ATTGGTATTA ATTATCTGAG ATTCATTTTC TATATCACTC
TTCTCCCTCT TCAGATTCGG AAAATGGACC TTGAGGCAAG AAGTTTGCAG CCAAGCGCAA AGGCAATGCT TCTTGCAAAG
TTGAGGGAGT ACAAATCTGA TCTAAGCAAC TTGAAAAAGG AATTTAAAAG GCTAACATCA CCTAATTCTG ATGAGGCTGC
CCGTGAAGAA TTGTTGGAGG CTGGCATAGC AGATACTCAT TCGGTAGATT TGGAACCCTA GATTGTATTA CTTTATGGCA
TCCTTAGTGA AAATAGTTTA TGGCTTTGTT GGTTAGAGAT ATGAAATATC TTCATTAACA GTTTAAACTT TTTGGATAGT
TAGTCCTTCC TTGACATGGT ATCAAAGCTT TTACGACCAA GTTGTCTAGA GTTTGATAAA AAAAGTTTAG TTTCAGCATG
AGATAGTTGC ATTATCTTTG CTTCAAATAT GTTAGAAATA TAATGTAAAA CTATAGGAGA TCCCATACGG GCTAGAGATA
TGATCAAATT TGTAAGGTTG AGTTAGGCCT ATCCCACTTT CTAAGAATAA TCATTAGTGT GTCTTCAGAT AGCAACTTAA
ACTTTTGGAA TAATTGGTTC ATGATAGTAA CTGTATTACC TTTAAGGTAT TTCAAATGAC AATGTTTTTA TTGAGATATT
TGTTATAATT AGAGAAATTG TCCATTAATG TGATCAGGGA AATTATACCA TCTTTCTGTT ATTCTATTAT TTCTGTAGGT
AGATTGATTT TTGTCCTTGA TTCTAATCCC TAAACTTATG AGCTTGATTC TGTTAGCCCT GTATATGAAT ATATGACTGG
GAATAAACAC TATTCTTAAA TTTCAACATT GTATTAGAGC AATACAGTCC TTTGACCTAC CCATCATTGT TTCATTGCTA
TGCTTCTTAA AATTCTGAGT TCTACTTTAA TCTCATGATT ATTCTTGCAA ATTAATCATC TTCCATGCTG TGTCAACCTC
CAACATCTTG TGACATTTTA AATCCCCTTT GTTAAGTTAT TGATTCCTAC AAGTTCAGCT GTCTTCCAGC TGTGTTATTC
ATTCCAACCA TATCTTTTGC CATCTTAGCC TCCACCTTGC ATATTACGAT ATTACTAGTG TGTTTCAGAC AATTGTTTTG
CTACGCATTC TATTGCCATA TTTCAAACAC ATTTTCAGCC ACCTTTTTCT TCCTTTTTTA ATCCTTGTTT TGTTCTTTGT
TCTGATAACA TTTTTCATTG GTCGTGCTCT TGCACTCGTG TTTCTGTCTC AGGTCTTATC TACTTTGCCA TTCATACTAT
AAGCATGATT TGAATAATTT TTTGTCATTG CAACCAATCC TCTATTATGT CATTGTTCTT ATAGATTTTC TCTTTTGTTT
CAAGTCATAC ACTATGAGAT CAGAGACATC AATCTACTCA CATGACTTTA CCAAAAGTAT CAGTTGGCCC TTCTATAGTC
TGAAAGAATC GTCACAGTCC CTTCATTTTC AAATCTCAAA TTATGTAGTT TGATTTCTTT TATTTAAAGA GGATATTTGT
TACTAGTTTA GATCTTAATT TGAGGGGGTC TGCTAAGATA TTGCAGGAAA CATTTTTCAG ATATTTGTTA TCATTAGGGA
AATGATGTCC TAAATTTATG AGATGGATTC TACGTCTTAT GTATAAAATA TAGGTACAGT GCTGTCATCA TTCTTTCGTT
TCAACATTTT TTATTTGTTG ATTGCTTGTA TAATTACAGC ATGAGATAGG TGGACCTGTG CATTGTCTAC ACTTCAAGCC
CAAAGGCTTT TGCATGGAGG GACATGCTTG GAATATAACA TAGTTTGTCA TTTTAGAGTC TTCACATAAT AGCTTAAGAT
TTTGGGAAGG TTGGTTCATG TCGTAGCTAT CGTTAAAGCT CTAAAACAAG TGATCTTTTG ATTGATTGAA AGATGATTGA
CCAAAGTAGG AGACTTTTAG AAACTATTTA CTAAAAGGAG GCTGTTTTAA AACATATTAC CAAAGTGTGA TGTTTTTTAC
TGTTTACCAG ATCAATTCGC TAGTCAAAGC AGCAAGTTCA GTGTCACATC AGTGTTCACA TATTCTTTTA AATTGGACAG
ATAGTCTATG TAACGTGCCA TGCATGTCAC ATGGATGACT AATCCAATTT TTTTAAAAAA ATATAAATGC TGTAGTGGTA
CTGAACTAGC TACTTTGGCA GCTGGATTGA CCTTGTCAAT GGCCAAAACT GTCCTAGGTT GGTAACGAAT CAAAACGGGC
CCTTCTAATA ATTAGTTTCT GTAAGTACCC TACTCTGACT AATTAACCAT TGATCGAATA TTTTCATAAT TGCACTCTAA
TTTTCGCCTC TGGTTTACTA CTTATTTTCA CTGTTATGTT TCCCTTTTTT AGTAATTCAT GTTGGGGTAT TTAATGTTTT
GTCTGTAGCC TCTTTAATTT GCTATCCAAT TAGTTCCTTA ACACCCGTTG ATGTTTGAAG AAATAGCTGT GTTTTGTCAG
TTTGATCAGT TACCTTTGCC AGTTTAATTG CAGGCTACTA TTACTTGAGT ATTTATGGTA GAATTCTTGT TAACAACCTG
TGAATTATGA CATTAATAAA GTATTATTGT TGTTGTTATT ATTAAGCATG TCATATATAT CTGGTTAGTA GGGTTGACAA
ATTGGATGGA TAGGATCTAT TTTATTTCAG ATTAAGGGAC CAGATGAAAA AAAAAAGTCC ATCAATCCAT TTTGATCCAT
TAAAAATTTA ATAAAAGATC TGATCCATTT ATTAAAAGTC AAATTCATCC ATCCATTGAC ATTTTTTTCC TGGATGGATT
AAATAAATTT TTAAAACAAA TTAAAAAATA AAGTTTGTAA AACAAATTTA AAAAAAAAAA AACATTTTTG AAAACTTTTG
GCAAAAATTA ATTTAAGATA GATTTAATCA TGAAAAAAAT TAGGTTTATT GATTTTGATT GTATTTATAG AGATGATTCC
TTAATCATCC CATAAAACTA ATTTGATATA AACCAATTTT TTATATTTTT GTAATGGATG AATTTGATGG ATTTTCTTGT
GGATGGATAG GATGAATGAT GGATAAATGG TTTGTTTTGC CACCCCTAAT AGTCATTGAG AGTGTTATGC TTGTGATGAG
AATAGGTTTG CTTGTTTCTT GCAAATAAGG TTGCAGACGT GTGCATATGC ATATCTTGGG CTCTGTTTTA TATATACTGA
GAGTGCAGCT TAGATGCATA TTTTTGCTTT CGGAATTATG AAATTAGTAG GCTTTTGCAG TTGGTTCCAC CTGTAAGCCA
TGTAAACGGT TCTGATGTTA TTCTATTTTT TGGTTGGGAA ATATGGATAA CATTGCAGGC TTCTGCTGAT CAGAGAGAAA
GATTAACTAT GTCTGTGGAG AGATTAAACC ACTCCAGTGA GAGAATAAGG GAGAGCCATA GAACCTTACT GGAGACTGAA
GAACTTGGTG TTTCCATCCT CCAGGATTTG CACAGTCAGC GAGAGACTCT ATTGAACTCC CATAAAAGGG TATGTTGACA
TGTGTAAGCT ATTTTTTTAA AAGTTGAATT CTGATTATGT GAACTTTAGG TTGTTTTAGT CCTTTTTTCA TGAACTAGGA
AAGAATCATG AGATGATCTT TATTATCTGA GAAGTATTAA AACCAATCAT GACACTTATT TGGGGAACAA GATTATGAAC
CTCCTTCAAC TTAACAAATG CAATGAGAAG TTGTGATGAT TATTGGTTGA TGGTCATGTT TCCTTGCGTT GCAGCTTCAT
GGGGTAGATG ATGCTATTGA CAAGAGTAAG AAGGTTTTAA CTACCATGTC ACGGAGAATA ACTAGGAACA AATGGATCGT
TGCATCTGTG ATTGGAGCTC TTGTTTTTGC TATAGTTGTT ATTCTTTTTT ACAAGCTATC TCATTAGCTT ATAAAATCAT
AAAAGATATG ACAGAATGGA AGCAATGTTT AATGCTTTTC TGTACTTGGT TGTATATAGG AAATGTATGG ACATAGGTGG
CGTTATCATA TATCCCTGCA ATTATTTCGC CTCTGTTATT TTTAAGATTG GAAAGTTTTC AATGATATAC CTTGCTTTTT
ATGCTCTTAA TTATGTTTTT CTTTTGAACT GTAAGAACAA TTACTTAATG CAAGTAAGTC TGTTCGAGTA TACTCTTTTT
ATGACATGAT GTATTTGTAG TAGCATATCT GAAGTTCATG ATTTCCAAAT CTTTGTGCTA ATGCCGTGTG CGAGTGCCTT
GTTCATTGCC TTAGCTGAAG TGTTTACCTG AAAAGAAACT TTTTGCGG

>Vigan.10G044500.01
ACCCTTTCCC ATTCAAATTA GGGTAAAATT GAATCATCCA TCACTTTGCA TTCATGCAGT TTCTATTTTT GTTTTCCAAT
TTTCAATTTT AATTTCTTCA TCTTTTCGAT CAAAGGGTGT GGCAAGATGA GTGAGGTTTT CGAAGGGTAC GAGCGCCAGT
ACTGTGAGCT CTCTGCTAAT CTCTCCCGCA AATGTAGTTC AACCTCGCTT GTTTCTGATC AAGAACAGAA GCTGCAGAAG
TTTTCTGAGA TCAAAGCAGG ACTGGATGAC GCTGATGTCC TGATTCGGAA AATGGACCTT GAGGCAAGAA GTTTGCAGCC
AAGCGCAAAG GCAATGCTTC TTGCAAAGTT GAGGGAGTAC AAATCTGATC TAAGCAACTT GAAAAAGGAA TTTAAAAGGC
TAACATCACC TAATTCTGAT GAGGCTGCCC GTGAAGAATT GTTGGAGGCT GGCATAGCAG ATACTCATTC GGCTTCTGCT
GATCAGAGAG AAAGATTAAC TATGTCTGTG GAGAGATTAA ACCACTCCAG TGAGAGAATA AGGGAGAGCC ATAGAACCTT
ACTGGAGACT GAAGAACTTG GTGTTTCCAT CCTCCAGGAT TTGCACAGTC AGCGAGAGAC TCTATTGAAC TCCCATAAAA
GGCTTCATGG GGTAGATGAT GCTATTGACA AGAGTAAGAA GGTTTTAACT ACCATGTCAC GGAGAATAAC TAGGAACAAA
TGGATCGTTG CATCTGTGAT TGGAGCTCTT GTTTTTGCTA TAGTTGTTAT TCTTTTTTAC AAGCTATCTC ATTAGCTTAT
AAAATCATAA AAGATATGAC AGAATGGAAG CAATGTTTAA TGCTTTTCTG TACTTGGTTG TATATAGGAA ATGTATGGAC
ATAGGTGGCG TTATCATATA TCCCTGCAAT TATTTCGCCT CTGTTATTTT TAAGATTGGA AAGTTTTCAA TGATATACCT
TGCTTTTTAT GCTCTTAATT ATGTTTTTCT TTTGAACTGT AAGAACAATT ACTTAATGCA AGTAAGTCTG TTCGAGTATA
CTCTTTTTAT GACATGATGT ATTTGTAGTA GCATATCTGA AGTTCATGAT TTCCAAATCT TTGTGCTAAT GCCGTGTGCG
AGTGCCTTGT TCATTGCCTT AGCTGAAGTG TTTACCTGAA AAGAAACTTT TTGCGG

>Vigan.10G044500.01
ATGAGTGAGG TTTTCGAAGG GTACGAGCGC CAGTACTGTG AGCTCTCTGC TAATCTCTCC CGCAAATGTA GTTCAACCTC
GCTTGTTTCT GATCAAGAAC AGAAGCTGCA GAAGTTTTCT GAGATCAAAG CAGGACTGGA TGACGCTGAT GTCCTGATTC
GGAAAATGGA CCTTGAGGCA AGAAGTTTGC AGCCAAGCGC AAAGGCAATG CTTCTTGCAA AGTTGAGGGA GTACAAATCT
GATCTAAGCA ACTTGAAAAA GGAATTTAAA AGGCTAACAT CACCTAATTC TGATGAGGCT GCCCGTGAAG AATTGTTGGA
GGCTGGCATA GCAGATACTC ATTCGGCTTC TGCTGATCAG AGAGAAAGAT TAACTATGTC TGTGGAGAGA TTAAACCACT
CCAGTGAGAG AATAAGGGAG AGCCATAGAA CCTTACTGGA GACTGAAGAA CTTGGTGTTT CCATCCTCCA GGATTTGCAC
AGTCAGCGAG AGACTCTATT GAACTCCCAT AAAAGGCTTC ATGGGGTAGA TGATGCTATT GACAAGAGTA AGAAGGTTTT
AACTACCATG TCACGGAGAA TAACTAGGAA CAAATGGATC GTTGCATCTG TGATTGGAGC TCTTGTTTTT GCTATAGTTG
TTATTCTTTT TTACAAGCTA TCTCATTAG

>Vigan.10G044500.01
MSEVFEGYER QYCELSANLS RKCSSTSLVS DQEQKLQKFS EIKAGLDDAD VLIRKMDLEA RSLQPSAKAM LLAKLREYKS
DLSNLKKEFK RLTSPNSDEA AREELLEAGI ADTHSASADQ RERLTMSVER LNHSSERIRE SHRTLLETEE LGVSILQDLH
SQRETLLNSH KRLHGVDDAI DKSKKVLTTM SRRITRNKWI VASVIGALVF AIVVILFYKL SH*