GBrowse Details

Vigan.10G036700.01

Basic Information:
Name: Vigan.10G036700.01
Multiple alignment
Variant Information
Position: Chr10:3623734..3625581 (+ strand)
Length: 1848
Functional Information:
Description: Similar to Allene oxide cyclase 2. [F6KBT2, Glycine max]
GO: Cellular Component: chloroplast (GO:0009507)
Molecular Function: isomerase activity (GO:0016853)
InterPro: Allene oxide cyclase (IPR009410)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.50,9.15,13.72,25.69,107.70,63.49,114.10,23.23
Arabidopsis thaliana homolog: AT3G25780.1
Automatic updates:
Name: NM_001254432 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max allene oxide cyclase 4, chloroplastic-like (AOC1), mRNA.
PubMed ID: 21626009 NCBI(pubmed)
Status: Known Variant
Name: NM_001317457 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max allene oxide cyclase 4, chloroplastic-like (LOC100800036), mRNA.
PubMed ID: 21626009 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr10:3623734..3623917 (+ strand)
Length: 184
Type: five_prime_UTR
Position: Chr10:3623918..3624155 (+ strand)
Length: 238
Type: CDS
Position: Chr10:3624271..3624794 (+ strand)
Length: 524
Type: CDS
Position: Chr10:3624795..3625581 (+ strand)
Length: 787
Type: three_prime_UTR

>Vigan.10G036700.01 class=Sequence position=Chr10:3623734..3625581 (+ strand)
ATGGTAAAAG GAAAACTCCT AATTTGGGAG AAAAAAAAAA GCACTAGTGG GCCTCTTTTT TTAACCTTAG CGTTCATTTT
CCTTTCACAG GTCCCAAAAT ACATCCACGT TTCAAAAGCT AAAGCAATAA TATTCTGAGT TTTCCATTTA TAAAGCTCCT
TTGACGAGTC ATTCATCACC ATCAATGGCT TCCATGAGCT CTCTGAAAAT GATTTCTTCC CTCAAACTCT CCCGTTCAAG
TTCTATCTCT CCTCTTCAAA GCCGAAAGAA AATAGGTTCT AGTCTCTTTC AATCCCTCCC AACAAAAACA TTAAAATTCT
CACCTACTCT TGTCTCCACC TCTAGAAGAA GTACCAACCA CATCACAACC ACAGCATTCT TCTTCAATAA CCAAAAGCAG
CATCAAGATT CTCAAAAGCC AGGTAAGTGC TTAGAGAACT AGTTTCCTCT CAGCAACCGC TTTGAGTAGC ATTTTTTTAA
CATTAGTTGT AGAGAACTAG CTAGCACTCC TCACAAATAA ATTTGTTCAT TTATCAGTCA AAGTTCAAGA ACTCTTTGTC
TATGAGATCA ATGAAAGGGA CAGAGCCAGC CCTGCATTTC TGAAGCTAAG CCAGAAGGAA GTGAACTCTT TAGGAGATTT
AGTGCCTTTC AGCAACAAAT TATACTCTGG AAACTTGGAA AAGAGATTAG GGATAACTGC AGGCTTATGT GTGCTCATAC
AGCATGTTCC TGAGAAAAAG GGTGACAGAT ATGAGGCCAT TTACAGCTTC TACTTCGGAG ACTATGGCCA TATATCAGTT
CAAGGAGCTT ATCTCACATA CCAAGACACA TACCTTGCTG TTACAGGAGG TTCTGGAATC TTTGAAGGTG TCTATGGACA
AGTCAAACTT CAACAACTTG TGTTCCCTTT CAAGTTGTTC TACACCTTCT ACTTGAAGGG TATTCCTGAT TTGCCTGCTG
AACTCCTTGG GAACCCTGTT CAACCTTCAC CAGCAGTTGA GCCATCTCCA GCTGCTAAGG CTACTGAGCC TCACGCCTGC
ATCACAAACT TCACCGATTG ATGATCCAAC CGAGCCCTTT TTCTTCTTTC AGAAAGTTTT AATTTTTCTT TGGTCCCAGA
ATAAAGTCTT GCTGTTCAAT ATTTACTATA TCATTGAATC TTCTTTTGGC TATGTTGGAC TACATTTAGC AGATGTACTA
GGTTAAACAT CATTGGAGTT TCGTTTGTGC TCATAACTGG GGGAGGCTAT TCTTGAAACA ACAGTTCGAT CATGAGTTTA
AATTTGAAAT AGTGATGAAT CTTTTGACAG CTATTATTTT TAGTTTTCTT TTTCTGAAGT TGGTAAGAGG ACAGACAGAG
AAGCGTACTA TAGGAAGCAC TGTTTGAACA GAACATTGAT TGATATTTGA AGCCTGTTTG TGATTAAATT AATGAAAGGT
TTCATCTATG TTCATGTGAC CCCTTATGGA ATGAAATTAT TCGTACATAT TATTGGACTT AAAATATTTA GCGCTGCACT
CTTTGATTGA AAGTAATAAC TGCAAAAGCT AGAAAAATGT TAGTCTGAAT GAAGAAACGT GGTAGGGCAC ACTTTTAGAT
GTGCAGTGAC ATGTGGGTTG TGGCTGAGAA AAACAGCTTC GACCAAAGGA GAAAGGCAAA ATGACATTGA AGATGACGAC
AGATAATAAC TCAGTTGCAT AATAATGGCT GTTACATTTA CAAATCGTGC ATAGTTGACT ATTTTATGTG GAGAATTCCA
TCATGCTATA AATTTTATTT AAATGGAATC CAATGTATGG CCTACAAATA TTAAATTTTA TTTAATATAT AAGACTGGGC
AAGTGGTT

>Vigan.10G036700.01
ATGGTAAAAG GAAAACTCCT AATTTGGGAG AAAAAAAAAA GCACTAGTGG GCCTCTTTTT TTAACCTTAG CGTTCATTTT
CCTTTCACAG GTCCCAAAAT ACATCCACGT TTCAAAAGCT AAAGCAATAA TATTCTGAGT TTTCCATTTA TAAAGCTCCT
TTGACGAGTC ATTCATCACC ATCAATGGCT TCCATGAGCT CTCTGAAAAT GATTTCTTCC CTCAAACTCT CCCGTTCAAG
TTCTATCTCT CCTCTTCAAA GCCGAAAGAA AATAGGTTCT AGTCTCTTTC AATCCCTCCC AACAAAAACA TTAAAATTCT
CACCTACTCT TGTCTCCACC TCTAGAAGAA GTACCAACCA CATCACAACC ACAGCATTCT TCTTCAATAA CCAAAAGCAG
CATCAAGATT CTCAAAAGCC AGTCAAAGTT CAAGAACTCT TTGTCTATGA GATCAATGAA AGGGACAGAG CCAGCCCTGC
ATTTCTGAAG CTAAGCCAGA AGGAAGTGAA CTCTTTAGGA GATTTAGTGC CTTTCAGCAA CAAATTATAC TCTGGAAACT
TGGAAAAGAG ATTAGGGATA ACTGCAGGCT TATGTGTGCT CATACAGCAT GTTCCTGAGA AAAAGGGTGA CAGATATGAG
GCCATTTACA GCTTCTACTT CGGAGACTAT GGCCATATAT CAGTTCAAGG AGCTTATCTC ACATACCAAG ACACATACCT
TGCTGTTACA GGAGGTTCTG GAATCTTTGA AGGTGTCTAT GGACAAGTCA AACTTCAACA ACTTGTGTTC CCTTTCAAGT
TGTTCTACAC CTTCTACTTG AAGGGTATTC CTGATTTGCC TGCTGAACTC CTTGGGAACC CTGTTCAACC TTCACCAGCA
GTTGAGCCAT CTCCAGCTGC TAAGGCTACT GAGCCTCACG CCTGCATCAC AAACTTCACC GATTGATGAT CCAACCGAGC
CCTTTTTCTT CTTTCAGAAA GTTTTAATTT TTCTTTGGTC CCAGAATAAA GTCTTGCTGT TCAATATTTA CTATATCATT
GAATCTTCTT TTGGCTATGT TGGACTACAT TTAGCAGATG TACTAGGTTA AACATCATTG GAGTTTCGTT TGTGCTCATA
ACTGGGGGAG GCTATTCTTG AAACAACAGT TCGATCATGA GTTTAAATTT GAAATAGTGA TGAATCTTTT GACAGCTATT
ATTTTTAGTT TTCTTTTTCT GAAGTTGGTA AGAGGACAGA CAGAGAAGCG TACTATAGGA AGCACTGTTT GAACAGAACA
TTGATTGATA TTTGAAGCCT GTTTGTGATT AAATTAATGA AAGGTTTCAT CTATGTTCAT GTGACCCCTT ATGGAATGAA
ATTATTCGTA CATATTATTG GACTTAAAAT ATTTAGCGCT GCACTCTTTG ATTGAAAGTA ATAACTGCAA AAGCTAGAAA
AATGTTAGTC TGAATGAAGA AACGTGGTAG GGCACACTTT TAGATGTGCA GTGACATGTG GGTTGTGGCT GAGAAAAACA
GCTTCGACCA AAGGAGAAAG GCAAAATGAC ATTGAAGATG ACGACAGATA ATAACTCAGT TGCATAATAA TGGCTGTTAC
ATTTACAAAT CGTGCATAGT TGACTATTTT ATGTGGAGAA TTCCATCATG CTATAAATTT TATTTAAATG GAATCCAATG
TATGGCCTAC AAATATTAAA TTTTATTTAA TATATAAGAC TGGGCAAGTG GTT

>Vigan.10G036700.01
ATGGCTTCCA TGAGCTCTCT GAAAATGATT TCTTCCCTCA AACTCTCCCG TTCAAGTTCT ATCTCTCCTC TTCAAAGCCG
AAAGAAAATA GGTTCTAGTC TCTTTCAATC CCTCCCAACA AAAACATTAA AATTCTCACC TACTCTTGTC TCCACCTCTA
GAAGAAGTAC CAACCACATC ACAACCACAG CATTCTTCTT CAATAACCAA AAGCAGCATC AAGATTCTCA AAAGCCAGTC
AAAGTTCAAG AACTCTTTGT CTATGAGATC AATGAAAGGG ACAGAGCCAG CCCTGCATTT CTGAAGCTAA GCCAGAAGGA
AGTGAACTCT TTAGGAGATT TAGTGCCTTT CAGCAACAAA TTATACTCTG GAAACTTGGA AAAGAGATTA GGGATAACTG
CAGGCTTATG TGTGCTCATA CAGCATGTTC CTGAGAAAAA GGGTGACAGA TATGAGGCCA TTTACAGCTT CTACTTCGGA
GACTATGGCC ATATATCAGT TCAAGGAGCT TATCTCACAT ACCAAGACAC ATACCTTGCT GTTACAGGAG GTTCTGGAAT
CTTTGAAGGT GTCTATGGAC AAGTCAAACT TCAACAACTT GTGTTCCCTT TCAAGTTGTT CTACACCTTC TACTTGAAGG
GTATTCCTGA TTTGCCTGCT GAACTCCTTG GGAACCCTGT TCAACCTTCA CCAGCAGTTG AGCCATCTCC AGCTGCTAAG
GCTACTGAGC CTCACGCCTG CATCACAAAC TTCACCGATT GA

>Vigan.10G036700.01
MASMSSLKMI SSLKLSRSSS ISPLQSRKKI GSSLFQSLPT KTLKFSPTLV STSRRSTNHI TTTAFFFNNQ KQHQDSQKPV
KVQELFVYEI NERDRASPAF LKLSQKEVNS LGDLVPFSNK LYSGNLEKRL GITAGLCVLI QHVPEKKGDR YEAIYSFYFG
DYGHISVQGA YLTYQDTYLA VTGGSGIFEG VYGQVKLQQL VFPFKLFYTF YLKGIPDLPA ELLGNPVQPS PAVEPSPAAK
ATEPHACITN FTD*