GBrowse Details

Vigan.10G023300.01

Basic Information:
Name: Vigan.10G023300.01
Multiple alignment
Variant Information
Position: Chr10:2027803..2033424 (+ strand)
Length: 5622
Functional Information:
Description: Similar to mediator of RNA polymerase II transcription subunit 18-like isoform X2. [XP_004487936.1, Cicer arietinum]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:13.29,6.91,8.09,8.45,11.94,20.17,17.61,9.29
Arabidopsis thaliana homolog: AT2G22370.1
Automatic updates:
Name: NM_001249801 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500095 (LOC100500095), transcript variant 4, mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254488 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max mediator of RNA polymerase II transcription subunit 18-like (LOC100803031), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001363044 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500095 (LOC100500095), transcript variant 2, mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001363045 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500095 (LOC100500095), transcript variant 3, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:2027803..2028101 (+ strand)
Length: 299
Type: five_prime_UTR
Position: Chr10:2028102..2028158 (+ strand)
Length: 57
Type: CDS
Position: Chr10:2030322..2030421 (+ strand)
Length: 100
Type: CDS
Position: Chr10:2031559..2031616 (+ strand)
Length: 58
Type: CDS
Position: Chr10:2031712..2032068 (+ strand)
Length: 357
Type: CDS
Position: Chr10:2033069..2033171 (+ strand)
Length: 103
Type: CDS
Position: Chr10:2033172..2033424 (+ strand)
Length: 253
Type: three_prime_UTR

>Vigan.10G023300.01 class=Sequence position=Chr10:2027803..2033424 (+ strand)
ATCTCAGTAG AAACTAAGCA GGTCAATTAA CCTCTTATTC CCCATTTGTT TCTTTATGTG CATTAGTTTT CAAAGTTTTT
ATGATTTGAG TTTTAGGTTT TCGCTGCTTT CCTTTCATTC TTCACTCTTC GTTATTACAG TGTTCCAGTA AAACTAAAAT
CAAAATTACA AAATAGATAC ATGTAAGTGC ACAAAACACT TGTCTGTGAT CTTTTGCTTC ACAGTATGCA CAAAACGTAA
GATCTTTCGT TTTGAAAGGC AATTTTGACT TCCATAATAC GCATATCTTT TGTGTAATAA TGCAGGTGAG CTTAGCGAAT
ATGGAATGTG TGGTTCAGGG AATTATAGAG ACACAGGTCA GTTTATGTTT TATTTGAATT GTTAATTGGA ACTGGCTTTT
TTTTTTTGAG TATGGGGAAG TATTGTTGAA TTGAATTTAT CTGGTTTAGC CATGGTCTCT TGATGTGAGT TATTATAAGT
CTGTTTCATG TTAATGACAA TCTCCATTTT TAGAATCCTG ATCTTGATCG CTGGTGTGTT GCATGTATTT AGTGTTGAAT
TCTGCCACCA AGGTAGGATA ATGATAAATT AACGGAATGC TCAAGGCACC AGACAGTCAG GAAAAGGATT GAGTAGCCAC
TACCTTTCTC AAATAAAAAA TACAAAGGAA AAAAGTTAAG TGCAAAGGCT AAACAAATTT AGTTACTAAA TAATCACAAG
AATGATTTAT CGGTCAAAAG AGTCACTTTC GTAGGGTTAA AGTCAACATT ATCTGCATGG TTAAAGTTAT CTCTAGAATG
CTTGTGTGTT TATGTGAATG AGAAATTCAC TGTGGAAAAT CTGGAAATTC ATTGTGTCCT TAACTTCTAA ATTATTTAAA
ATATGAGTTA AAGGTTTAAC TAAAAAAATT CTACTGTTTA TATTCACCAA ACCTTAATTA CCTTTTGCTT ATTGCTGTCA
AAATGGGTTG TAACCCGCGA GACAACCCGG CTCACCACGG GTTTGAACCG GCTTGGGTTT GAAAAAAATG TAATTTTTTT
TTAGGCTCAC CAACCCATCT AATTTAATTT AATTACTTAT TATTTTGTGT TTCAATATTA TGAGTATCAT TTTTTTATTA
TATTGTAGAT GGTGATAAAG AAGATGTTTC AAGAGAGACA AATATTATAG ATTTATCTAT TCAAAATTCT AATATTATAA
TTGGATAAGT GATACAAAAA TTATCATTAT TAAAAACTTA TTTGTTCGCC TTTTGTACAT GTTTTTGGAT TAAGTTTGGA
TTCTGTGATA CTTTTTTTTA TTTTGAATTG TCTTTGGAGT GTAACATCAT TTTAGTGTGA CATTTATTTA GATTTGAATT
AAAAAATTGT AATTTTTTTA TTTTAAAAAA AATATATAAT TAAATGAGTC AATGAGTCAA CCTGTTTAAC CTACCAACTC
GTGGCGGGTC GGGCTGGATT CAAATTTTTT CAGCTCGCTA ATAAGTGAGC CGGGTTGGGT TGACTCACTA AGTGACTAAC
CCGTGGTGAG CCGGACCGGA TCGAGCCGGG TTATCCGTTT TGACAGCTCT ACTTTTGTCT ATGCATTTCT ATCATGGTTG
ATAAAGGGTT AATCATTTAA AAATTGAAAC TTCTTTTAAG CTGTCATCTT TTTGAGAATT TGATGTACAG AATCAATTGT
TCAAATTGTC TGAATATATC ATAGTGAGAT GCAATTAATG ACCTGTTCCA AGCTCTATAG AATCAGTTTT CAATCACATA
ATAAAAAGAT TATCTTTCAA CAGTTGCTTG CAATGAGAAA AGGTGTTTGA TTATTTCATC AGTATTCAAA TATCACTCTA
ATAATTGAAT ACAATAAGCT TATTATATGA GAATAAGACC ATTGTTCTCA CAAAGTTTTC AAATATTAAA ATTCCAAACT
GATCATTTTC ACTTCTACTA AAATGTTCAA AAAAATTCTG ATATCTGTTT ACAATAATAT GTTGACACTG AGTATTCTCA
TTGTACGCAC AAATCTATAT TTTCCTGTGA ATCTATATTT TCTAAAATAA GTTGATCCCC TGTGTGTGAA GAAGCTATTG
TTGTTATAGA AAGTAACACT ATTTTCTAAT AGCTTGGGTA TGCATGATGG TATATTGTCC TACTTTATTA TAATTATTTA
TTTGAATCTA CACTTGAAAG ACAGGTTGTC TCATGGAAAC CATTCTAACT CTGTTTTTCT TTCTTAATTG GAAGAAATAA
TCACTCGTAT TTGTCACAGA CAACTTGGGA AAAAACAAAT GATTATTTGT CAAACATGAA CCCACTTTTG CACTCATTAT
TTGATGAAAG TCAATAGAAT CACAATTTTT CTTGAACAGA AATAATAATG TAAACATTCT TTCTGTTCTC TATCCATAAT
TATTCTTTTA GATAATCAAG ATATGTTCTG TTAGTATTAG ATTTTTCCAG AAGGAAACTT TCATGTTGAA AGACTGTCTA
TGACAACCTT GGCTTTTAAT ATTTTATTAT TCTTCACAGC ATGTTGAGGC TTTGGAGATT CTTCTTCAAG GACTATGTGG
TGTTCAGAGA GAACGATTGA GGATACATGA AATATGTCTC AAGAGTGGTC CCCATCTGGG TGAGTGTTTT ATTTCAATAA
TTTGATATTT TTTGGCCAAT ATTTTCATTT TTTATTGTTA TGAAAGTATA TTTATTACTA AGAGGGAAAT AATATCCTGG
GAAAACTAGC ACGAAATAAC TTGCATTAGA AGACAGGGAT ATGTATGTCC TTACAAGAAA GCCTTCAATT GCTATATGTC
TAAGAAGCAA GCCCCTGAGC GGTTAAAAGT GCATATGAGA TGAATAGTTC TGAGAATAGA GAGAATTCTA TTTCGTAACA
GCAACATAAA AGCACCATCC TTCACCCAGC TCCACCAGAA CCTTTCCCAA TTTACTCCCT CCTAAGCCTT CTCCAAATGC
AATTTTGGAA AATTACTTCA AATTATGAAG AAATACCTAG AATACTTTGG AAGTCTGCAA TGAATAATCC AGAATACCAT
ATATGATTAG CTTCTGGCCA TTGTAAAATG GAACGACTTA ATATTTTTTA GTGCTGTCTA CAACCACATA ATGTGTAATC
TCTATTAAAT GTTTGTTTCA GTATATGCAG TGATAATTTC ATTTAGAGTG CTTTCGATTT GCTAACAAAT GAAGAACTAT
ACAAATTTCC AAAAATATTT TAAAAGAAGG CCTCAATTTG GCTAAACCTC ATGAAGGAGA ACAATCATCA AGCCCAATCA
ATCTTGTACC AAGCATGGAC TCTTACTCCG TGTCTGGAAC TGCTTATGTT GTATTGGCCA CTTAATAGCA GACAAAGCAG
AACACTTGGA TTTGACTTTG CTTTAACTGA GTTGTTTCTC ATGAACTGTT TTTTAGTGTG CATCAAGTGC ACCCTTAAGC
ATTTGCACTG GACTACCATC TAAATGGCAT GCTTCTTGCT CCTTTTTTGA CCCATGATGC TCTTTTGTAC TGGCTTCAGT
TTTAGATTTC ATGGTGTTGT TTTACTCTGT TCTTTGGAGA AATTTATGCT TATCCAAGAT GAGGTTTTCT CTGTATTGTA
TCTTCACGAA TAGAGATGAA ATATTTTCAA CTTTTTATAT GATTCCCTCA ATATTTTTGT GTACTTTTCA ATTATTTGTG
TATATATCCA GTTTTTTAGT ATAGCATATT TTGATCTTTT TTCCATTAAT CATGATTTTA TGGGCTTTGT TTTTAGGCAG
TGTAACCTCA GAAGTTCGAC TCCTGTGTGA CCTAGAGCAA GCTGAACCTT CGTGGTAAAC CATATATCTT TACTTTCAAA
ACTTTGTTAG ATTTTATTTT TCATAATCAA GTACCTATTT AATATGTGAT TTATTGATGG CTTGTTCAGG ACTGTTAGAC
ATGTAGGTGG TGCAATGAGG GGTGCAGGTG CAGAGCAAAT TTCTGTTCTG GTTAGGTCAA TGGTGGAAAG CAAAACAAGC
AAAAATGTTC TTCGTTTGTT TTATACACTG GGTTACAAAT TAGATCATGA GCTTCTGAGG GTGGGATTTT CCTTCAATTT
CTACCGGGGT GCACAAATCA CTGTAACAGT TTCATCAATC AATAAAATGC TGAAGTTGCA TGCAACTGAC GAGGCGGTGC
CAGTAACACC TGGTATACAA ATGGTCGAAG TAACAGCACC TGCAGTTGCT GAAACCTACA CTGAAGTTGC TGCTGCTGTA
TCATCCTTCT GTGAATACCT TGCACCGTAA GAATCTCTTT TCTCAATTGC CCAATTTTCT ATACCAATTG CAAATATTTT
ACACACCAAG AGGCTGGAGC TGCTACTAGT AACTAGCAGA CTTACTGCAT TGTTAATTTT AGTAACTTTT CATGCTTGGT
TGATATTTTT AGGTCCTGAT TGTCTAAGGT CGTACCATCA TATTAGAATT AGTTAACGGT TATCCATTTA AGTGGTTTTT
CAACCTTGAG AGTCTGCAGA ATAATACCAT ACATTTATTA TCTTCCTTCA CATCTATGAA GCACAAATAC GGGGATATGG
GTAAATTGAA AAAAATATAG GACAAGAGTG GGACCCCGCT TGCAAAGCTC TCAGTCAAGT GGTACTCCAT TTTGTTTCTG
ATTTCCTTAT TCTTTTTTTA TTAAACTTGC TACGCGTGTC CTGGATGATC TCTCCAGCAT GTCAAGGAAT AGACTGCGTC
ATCTCCGGCG TGTCCGAGAG CATGGCCGAG TCTGGCCCAA CAGTCTATAT CGGACAGTGT CATTGATAGA ACTATGAAAG
TTTACGTGAG AAAAGGAAGG GAAAAAATAA CAAAGAATAA CTGTTAAGGA GGGTTTGGGG GAAATGATTA GGCAGTTGGA
GTTTCCTTAG AAGGTTTGCC TTTTTAAGGG GGAGCGGGTG TCTGGGACAG ACACGTTATT TTGTATCTTT GTAGTGGATA
GGTTTGTACC TGTGAGAAGG GAGATTGTTC CCTTGGATGC TTTTGAACAT TTTCTGTAAT ACCCACATAA CAATACCAGG
TCTTTCTGCT GTAAGTGTAT GTTGTTTGTT CTGTCATCAA AACAGAGGAG AGTCTTGGTT TCTTGTCACC AAGAAACCTA
TCAGCCATAC ACGCCTCTGT CATGTATTCG TATCCGCCAT GCGCTTCAGA TGCGACGCGA AAACGCCATT TTTTTTTTGC
GTATCGGAGC TTTGCAGCTT CACATAGATC ATTGATATAT GTAACTCTTT GGTGTGAATT TCGCAGGCTT CTCCACCTGT
CCAAACCAGG CATTTCAACC GGTGTTGTAC CTACTGCTGC TGCAGCTGCT GCATCTCTAA TGTCGGATGG CGGGGGCACA
ACATTATAGT GAGATTGTAT TGTTACTTTA AGAAACACAA TTTATGTACA TCACTTGCTA AATTGCTTTA AAGACACGTC
AACGTAAAAT TTTCACTTCA CATGAACATG TCAAGTTTTA ACATTGGAGT ATGCCGTGTA TTTATGAATT GCTTCGTGAT
CATATAGAAC TGTAATGTAA TTGTTTCAAG CTTTTGGGAG TAGGATTTAT TCAGAAGAGA AGAAAAGAAT CAGATGCGTG
GCTAAATGTT TAATATGTTA AA

>Vigan.10G023300.01
ATCTCAGTAG AAACTAAGCA GGTCAATTAA CCTCTTATTC CCCATTTGTT TCTTTATGTG CATTAGTTTT CAAAGTTTTT
ATGATTTGAG TTTTAGGTTT TCGCTGCTTT CCTTTCATTC TTCACTCTTC GTTATTACAG TGTTCCAGTA AAACTAAAAT
CAAAATTACA AAATAGATAC ATGTAAGTGC ACAAAACACT TGTCTGTGAT CTTTTGCTTC ACAGTATGCA CAAAACGTAA
GATCTTTCGT TTTGAAAGGC AATTTTGACT TCCATAATAC GCATATCTTT TGTGTAATAA TGCAGGTGAG CTTAGCGAAT
ATGGAATGTG TGGTTCAGGG AATTATAGAG ACACAGCATG TTGAGGCTTT GGAGATTCTT CTTCAAGGAC TATGTGGTGT
TCAGAGAGAA CGATTGAGGA TACATGAAAT ATGTCTCAAG AGTGGTCCCC ATCTGGGCAG TGTAACCTCA GAAGTTCGAC
TCCTGTGTGA CCTAGAGCAA GCTGAACCTT CGTGGACTGT TAGACATGTA GGTGGTGCAA TGAGGGGTGC AGGTGCAGAG
CAAATTTCTG TTCTGGTTAG GTCAATGGTG GAAAGCAAAA CAAGCAAAAA TGTTCTTCGT TTGTTTTATA CACTGGGTTA
CAAATTAGAT CATGAGCTTC TGAGGGTGGG ATTTTCCTTC AATTTCTACC GGGGTGCACA AATCACTGTA ACAGTTTCAT
CAATCAATAA AATGCTGAAG TTGCATGCAA CTGACGAGGC GGTGCCAGTA ACACCTGGTA TACAAATGGT CGAAGTAACA
GCACCTGCAG TTGCTGAAAC CTACACTGAA GTTGCTGCTG CTGTATCATC CTTCTGTGAA TACCTTGCAC CGCTTCTCCA
CCTGTCCAAA CCAGGCATTT CAACCGGTGT TGTACCTACT GCTGCTGCAG CTGCTGCATC TCTAATGTCG GATGGCGGGG
GCACAACATT ATAGTGAGAT TGTATTGTTA CTTTAAGAAA CACAATTTAT GTACATCACT TGCTAAATTG CTTTAAAGAC
ACGTCAACGT AAAATTTTCA CTTCACATGA ACATGTCAAG TTTTAACATT GGAGTATGCC GTGTATTTAT GAATTGCTTC
GTGATCATAT AGAACTGTAA TGTAATTGTT TCAAGCTTTT GGGAGTAGGA TTTATTCAGA AGAGAAGAAA AGAATCAGAT
GCGTGGCTAA ATGTTTAATA TGTTAAA

>Vigan.10G023300.01
ATGCAGGTGA GCTTAGCGAA TATGGAATGT GTGGTTCAGG GAATTATAGA GACACAGCAT GTTGAGGCTT TGGAGATTCT
TCTTCAAGGA CTATGTGGTG TTCAGAGAGA ACGATTGAGG ATACATGAAA TATGTCTCAA GAGTGGTCCC CATCTGGGCA
GTGTAACCTC AGAAGTTCGA CTCCTGTGTG ACCTAGAGCA AGCTGAACCT TCGTGGACTG TTAGACATGT AGGTGGTGCA
ATGAGGGGTG CAGGTGCAGA GCAAATTTCT GTTCTGGTTA GGTCAATGGT GGAAAGCAAA ACAAGCAAAA ATGTTCTTCG
TTTGTTTTAT ACACTGGGTT ACAAATTAGA TCATGAGCTT CTGAGGGTGG GATTTTCCTT CAATTTCTAC CGGGGTGCAC
AAATCACTGT AACAGTTTCA TCAATCAATA AAATGCTGAA GTTGCATGCA ACTGACGAGG CGGTGCCAGT AACACCTGGT
ATACAAATGG TCGAAGTAAC AGCACCTGCA GTTGCTGAAA CCTACACTGA AGTTGCTGCT GCTGTATCAT CCTTCTGTGA
ATACCTTGCA CCGCTTCTCC ACCTGTCCAA ACCAGGCATT TCAACCGGTG TTGTACCTAC TGCTGCTGCA GCTGCTGCAT
CTCTAATGTC GGATGGCGGG GGCACAACAT TATAG

>Vigan.10G023300.01
MQVSLANMEC VVQGIIETQH VEALEILLQG LCGVQRERLR IHEICLKSGP HLGSVTSEVR LLCDLEQAEP SWTVRHVGGA
MRGAGAEQIS VLVRSMVESK TSKNVLRLFY TLGYKLDHEL LRVGFSFNFY RGAQITVTVS SINKMLKLHA TDEAVPVTPG
IQMVEVTAPA VAETYTEVAA AVSSFCEYLA PLLHLSKPGI STGVVPTAAA AAASLMSDGG GTTL*