GBrowse Details

Vigan.10G013100.01

Basic Information:
Name: Vigan.10G013100.01
Multiple alignment
Variant Information
Position: Chr10:1215207..1218727 (+ strand)
Length: 3521
Functional Information:
Description: Similar to Uncharacterized protein. [I1KKP0, Glycine max]
InterPro: PPPDE putative peptidase domain (IPR008580)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.02,3.25,2.88,0.59,2.61,6.78,3.89
Automatic updates:
Name: NM_001253957 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max UPF0326 protein At4g17486-like (LOC100777596), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:1215207..1216748 (+ strand)
Length: 1542
Type: five_prime_UTR
Position: Chr10:1216749..1216959 (+ strand)
Length: 211
Type: CDS
Position: Chr10:1217797..1218084 (+ strand)
Length: 288
Type: CDS
Position: Chr10:1218177..1218445 (+ strand)
Length: 269
Type: CDS
Position: Chr10:1218446..1218727 (+ strand)
Length: 282
Type: three_prime_UTR

>Vigan.10G013100.01 class=Sequence position=Chr10:1215207..1218727 (+ strand)
GGTCAGATTC ATCACACTCA TACTTGTTCC TGTACATTTA TCTATACCTC ACAGATCCTC TCTTTTTTTC AATTTAACTA
AACTTTATTA TTCTTGTTAT TAACTCATTA ATATCATTTG TTTAAAGCGT GTGAATTGGA CCACTTTTTA AATGAAAGTA
GGAAGAAGAT TCACCAGCTT GTGGACAAGT AAAGCCTCAA ATTAACCAGC TAGAAGACAT CTCCAGTTTT CCCTTTAAGC
CAGAACTATA CCTTTTAGGC ATTAACACTC TCATAAAAGG AGCCAACAAG AGAATCAGCT CAATGTGGCA GAAGAGAGTA
TTAGTTATAT TAGACAAGAT GGGATTGAGA ATCAATGCAT TGGAGAAAAA ATTGAGCATG TGTGGAGATG ACTTATAAAA
CGTTTGTTTC AGAAGACTTC CCCATAAACA CTTTTAGTAG AGAAAAAAAT AGGAAAATAG GATGAGTTTC TCGGTGAGCT
CAGATTAGTT TATGTATTAG TTAATTTGTA AGAGTTCTAT CATAAAGCTT TTATGGAGGC ATTCACTTCG TTTGTTCTTC
TTAGTTTTCT TTTCTGAAGT GTTTATGGAA AGTAGTTCTA TTGATAGAGG TATAAAGAGA CTAAGAAAAC GTCCAAGTGA
AGAACCATTA GGAAGGATAT AAAGGTTAAT GGTTTGTCCA TATACATTAT TTCATAGTAA TCATTATTGC ATCATTTAAT
TCATTTACGT GATGCCACTC AGTGGGAAAG AAAAGGCATT GTTATTGTTG CAATATCCTT TAAATTGTTA CTGGTTAACT
GATATCTCTG ATATCTATAT ATGTCTGTAA ACACAAACAA ATATAAATTT CATGGTTGCC CCGAGTTCCT GATGCTAATT
ATTTTTATCC ATTGTGGTGC ATGTCTCAAT GTTTGAATGT TATATTTTGT CTCTTGAATT GTAATCTCCT CCTTGCTCCA
TAGCTTAAAA GTGACATGCA GAACAGAAGA ACAAACCTTA AACTAGAAAA TGTGACGAAA ATGATTATTT TCTTCATTCA
TGCCTAATGC AAACAGCATC AATGAAAGAA AATGAAGAAA AAGTTGCAAA TTCTTTTATG TTCAGTAAGT AGAATGTTCA
CTGATGTCAG TTTGATTAAA AGATGTTGAA CATGGCAAAA GGGGGAAAAA CGAGTCTCGT CCATGCTCTA GAAAGTGTTA
TGAACATTTT TCATGAATGG AAGACATGCA TGTGAAAGTA TCATTGCAAC AGATTGGTGA ATGATGTTAA CTGGAGAAAA
CTATATGGTT GAAGAGATCC ATTTTCTTTC AGTTAATGTG TTCAAGAAAA AATAAGTGTC ATCCATTTTT TTGCTGTAAT
ACATAGTTAT CAGTTGAAAT CCTAGCTCAA TGGTAAAAGC ATTCTGTCTA GAGTAAAATG ATGTGCTTTC AGTTTTGATG
TTTTGTCAAT AACATGGTCT TTGTGAAAAT GAATTTTTGT TGGTATTTAT GTTTATGCAG GTAGGATATA GATATTGACT
GCTTTCTGAG TTCACTCCTA CAATGAAATC AGGTTTCAAA AATGGTTGGC CCTCTGTTGT GCGTCTTCGT CTTAGAGACA
AATCAGTGAC CCCCTTCTGC ATATTCTCTA AAGTGAAATC CGCCGGCAAC ATACCAGGGA ACACACCTGT CTATCTCAAT
GTCTATGATT TGACAACAGT AAATGGTTAT ATGTATTGGG CTGGCCTTGG TATTTTCCAC TCTGGTGTTG AAGGTTAGCT
GACTGTTAAA ACCTTTTCAA AAAATCCAAA ACTGTTTCAT TATTTTAGAA AAGAATATGT GCCTAGAGTT TTGCTAGATT
ATAATACATT GATACTTCTT CATATTTTGA GGAAGGGGGT TATGTATATT ATATCTGTGA GGTTTTTCAT GAGAAGAGAC
AACAGGAGAT TTGGTACCAA GAAGTTATGA ACAAACCTAT ATAAGAGACT AAAATATCAC TTCAAACCTA AAATTTTAAG
ATAATGGGTA TAGGAGTCCT TCTACTTATA TATATTGTTA AAAAATGAAT TTTAAGCCTA ATTCAACTTC ACAAAATTAG
CTTGTAAAAT AAGGTTTGTA CCCACTTATA TATATTTTAA ATTGGCCTAG TCAATGTGAG ACTTCCAACC ACCCCCTCAC
GCTGAGGTAT ATACATCTCG AGTATGAGAT TAGACATTAA TGGGTGGTCC GATAGCGGAT GAAATGATAT ATACTCAACA
AACAACAAAT ATCGTTAACA TAGGTTCTAA CCTGGCTCTG ATACCATATT TAGGAGTAGA CTTTAAGCCT AACTCAACTT
CACAAAATCA GCTTGAAATG CGAGGTTTGC ATCCACTTAT ATATTCTAAA TTGGTTTAGT CGATGTGAGA CTTTCAACAT
GTATTAGTCA CTTTACTCAT TTTTACATAA TGGGGGAATT CAAACTCACC TTGAACTCTT AACAGTATTT ATGCATGTAC
ATATAACTTT TCTATGTGAA TATTTGTGGC TTAAGCTTTA TTTGGAGAAA TAAAGACTAT GGTCATGGAT TCCCGGAAAG
CTTCTTAAAA TGAAGTTATT ATGCTGACAG TTTATGGAGT AGAATATGCA TTTGGCGCTC ATGACTATCC AACAAGTGGT
GTCTTTGAGG TTGAACCTCG GCAGTGTCCT GGCTTTAAGT TTAGGAAGTC CATATTCATG GGAACTACTA ATTTAGATCC
CTTCCAGATT AGAGAGTTCA TGGAACGTCA GTCTGCAAAT TACAATGGTG ATACTTATCA TTTGATTGTC AAGAACTGCA
ACCATTTCTG TGAGGATATT TGTTACAAGC TAACAGGAAG TTCTATACCA AAATGGGTCA ATCGTCTGGC AAGAATAGGT
ATGTGGCATA TTTTTATACT CCAGATTGTG TCACTTTTTG TTCTGCAAAG CATATGCATT ATTAGAACTG AGTTTTTGTC
CTCCTTGCAG GTTCCTTCTG CAACTGCATA CTCCCTGATG CTCTTAAAAC TTCCACTGTT GAGCATGATC CAAACTTTCA
AGGGTGTGAT AGTGAGAAAA GAAGACTGAG AACTGCTTTC AGTTGTTTGT CATCAATCTC AATGCCTCAT AAGGAAGTTT
CAATGTCTTC ATTATTTATG CACTCTCACT ATAAAGGGTG CCTGCCACCA TGGGAGTTAA AGAAGTCTAA AAAGGGAAGA
CTAAAGCAAA AGTTAGAAGA GCAGTTCACT TCTCAGTAAC TCTTCTCTGT GCTGTAGAGT ATCCATTGCC TTTCTGGTAA
CTCAATCACT GGAAAGAAAT TATTGTTACT GCTTTCAGTT ATCTGTGCAA GTGCACTTCC TCAAGTGCAA AATTTTCTGT
TCATATTCAT TTTGAATGTT CAAGCTCATG CCTCTTTGTT GCTTCTTTTT TCTTTCCCTT TCTTACTTTT TGCTTGTAAT
CTTTCTTTGA TTGGGAATCT AATCTATGTC AGATATATTG CTGTGTCAGC TCAATTTTTC ATAGAAAATG ATTATTTGAC
C

>Vigan.10G013100.01
GGTCAGATTC ATCACACTCA TACTTGTTCC TGTACATTTA TCTATACCTC ACAGATCCTC TCTTTTTTTC AATTTAACTA
AACTTTATTA TTCTTGTTAT TAACTCATTA ATATCATTTG TTTAAAGCGT GTGAATTGGA CCACTTTTTA AATGAAAGTA
GGAAGAAGAT TCACCAGCTT GTGGACAAGT AAAGCCTCAA ATTAACCAGC TAGAAGACAT CTCCAGTTTT CCCTTTAAGC
CAGAACTATA CCTTTTAGGC ATTAACACTC TCATAAAAGG AGCCAACAAG AGAATCAGCT CAATGTGGCA GAAGAGAGTA
TTAGTTATAT TAGACAAGAT GGGATTGAGA ATCAATGCAT TGGAGAAAAA ATTGAGCATG TGTGGAGATG ACTTATAAAA
CGTTTGTTTC AGAAGACTTC CCCATAAACA CTTTTAGTAG AGAAAAAAAT AGGAAAATAG GATGAGTTTC TCGGTGAGCT
CAGATTAGTT TATGTATTAG TTAATTTGTA AGAGTTCTAT CATAAAGCTT TTATGGAGGC ATTCACTTCG TTTGTTCTTC
TTAGTTTTCT TTTCTGAAGT GTTTATGGAA AGTAGTTCTA TTGATAGAGG TATAAAGAGA CTAAGAAAAC GTCCAAGTGA
AGAACCATTA GGAAGGATAT AAAGGTTAAT GGTTTGTCCA TATACATTAT TTCATAGTAA TCATTATTGC ATCATTTAAT
TCATTTACGT GATGCCACTC AGTGGGAAAG AAAAGGCATT GTTATTGTTG CAATATCCTT TAAATTGTTA CTGGTTAACT
GATATCTCTG ATATCTATAT ATGTCTGTAA ACACAAACAA ATATAAATTT CATGGTTGCC CCGAGTTCCT GATGCTAATT
ATTTTTATCC ATTGTGGTGC ATGTCTCAAT GTTTGAATGT TATATTTTGT CTCTTGAATT GTAATCTCCT CCTTGCTCCA
TAGCTTAAAA GTGACATGCA GAACAGAAGA ACAAACCTTA AACTAGAAAA TGTGACGAAA ATGATTATTT TCTTCATTCA
TGCCTAATGC AAACAGCATC AATGAAAGAA AATGAAGAAA AAGTTGCAAA TTCTTTTATG TTCAGTAAGT AGAATGTTCA
CTGATGTCAG TTTGATTAAA AGATGTTGAA CATGGCAAAA GGGGGAAAAA CGAGTCTCGT CCATGCTCTA GAAAGTGTTA
TGAACATTTT TCATGAATGG AAGACATGCA TGTGAAAGTA TCATTGCAAC AGATTGGTGA ATGATGTTAA CTGGAGAAAA
CTATATGGTT GAAGAGATCC ATTTTCTTTC AGTTAATGTG TTCAAGAAAA AATAAGTGTC ATCCATTTTT TTGCTGTAAT
ACATAGTTAT CAGTTGAAAT CCTAGCTCAA TGGTAAAAGC ATTCTGTCTA GAGTAAAATG ATGTGCTTTC AGTTTTGATG
TTTTGTCAAT AACATGGTCT TTGTGAAAAT GAATTTTTGT TGGTATTTAT GTTTATGCAG GTAGGATATA GATATTGACT
GCTTTCTGAG TTCACTCCTA CAATGAAATC AGGTTTCAAA AATGGTTGGC CCTCTGTTGT GCGTCTTCGT CTTAGAGACA
AATCAGTGAC CCCCTTCTGC ATATTCTCTA AAGTGAAATC CGCCGGCAAC ATACCAGGGA ACACACCTGT CTATCTCAAT
GTCTATGATT TGACAACAGT AAATGGTTAT ATGTATTGGG CTGGCCTTGG TATTTTCCAC TCTGGTGTTG AAGTTTATGG
AGTAGAATAT GCATTTGGCG CTCATGACTA TCCAACAAGT GGTGTCTTTG AGGTTGAACC TCGGCAGTGT CCTGGCTTTA
AGTTTAGGAA GTCCATATTC ATGGGAACTA CTAATTTAGA TCCCTTCCAG ATTAGAGAGT TCATGGAACG TCAGTCTGCA
AATTACAATG GTGATACTTA TCATTTGATT GTCAAGAACT GCAACCATTT CTGTGAGGAT ATTTGTTACA AGCTAACAGG
AAGTTCTATA CCAAAATGGG TCAATCGTCT GGCAAGAATA GGTTCCTTCT GCAACTGCAT ACTCCCTGAT GCTCTTAAAA
CTTCCACTGT TGAGCATGAT CCAAACTTTC AAGGGTGTGA TAGTGAGAAA AGAAGACTGA GAACTGCTTT CAGTTGTTTG
TCATCAATCT CAATGCCTCA TAAGGAAGTT TCAATGTCTT CATTATTTAT GCACTCTCAC TATAAAGGGT GCCTGCCACC
ATGGGAGTTA AAGAAGTCTA AAAAGGGAAG ACTAAAGCAA AAGTTAGAAG AGCAGTTCAC TTCTCAGTAA CTCTTCTCTG
TGCTGTAGAG TATCCATTGC CTTTCTGGTA ACTCAATCAC TGGAAAGAAA TTATTGTTAC TGCTTTCAGT TATCTGTGCA
AGTGCACTTC CTCAAGTGCA AAATTTTCTG TTCATATTCA TTTTGAATGT TCAAGCTCAT GCCTCTTTGT TGCTTCTTTT
TTCTTTCCCT TTCTTACTTT TTGCTTGTAA TCTTTCTTTG ATTGGGAATC TAATCTATGT CAGATATATT GCTGTGTCAG
CTCAATTTTT CATAGAAAAT GATTATTTGA CC

>Vigan.10G013100.01
ATGAAATCAG GTTTCAAAAA TGGTTGGCCC TCTGTTGTGC GTCTTCGTCT TAGAGACAAA TCAGTGACCC CCTTCTGCAT
ATTCTCTAAA GTGAAATCCG CCGGCAACAT ACCAGGGAAC ACACCTGTCT ATCTCAATGT CTATGATTTG ACAACAGTAA
ATGGTTATAT GTATTGGGCT GGCCTTGGTA TTTTCCACTC TGGTGTTGAA GTTTATGGAG TAGAATATGC ATTTGGCGCT
CATGACTATC CAACAAGTGG TGTCTTTGAG GTTGAACCTC GGCAGTGTCC TGGCTTTAAG TTTAGGAAGT CCATATTCAT
GGGAACTACT AATTTAGATC CCTTCCAGAT TAGAGAGTTC ATGGAACGTC AGTCTGCAAA TTACAATGGT GATACTTATC
ATTTGATTGT CAAGAACTGC AACCATTTCT GTGAGGATAT TTGTTACAAG CTAACAGGAA GTTCTATACC AAAATGGGTC
AATCGTCTGG CAAGAATAGG TTCCTTCTGC AACTGCATAC TCCCTGATGC TCTTAAAACT TCCACTGTTG AGCATGATCC
AAACTTTCAA GGGTGTGATA GTGAGAAAAG AAGACTGAGA ACTGCTTTCA GTTGTTTGTC ATCAATCTCA ATGCCTCATA
AGGAAGTTTC AATGTCTTCA TTATTTATGC ACTCTCACTA TAAAGGGTGC CTGCCACCAT GGGAGTTAAA GAAGTCTAAA
AAGGGAAGAC TAAAGCAAAA GTTAGAAGAG CAGTTCACTT CTCAGTAA

>Vigan.10G013100.01
MKSGFKNGWP SVVRLRLRDK SVTPFCIFSK VKSAGNIPGN TPVYLNVYDL TTVNGYMYWA GLGIFHSGVE VYGVEYAFGA
HDYPTSGVFE VEPRQCPGFK FRKSIFMGTT NLDPFQIREF MERQSANYNG DTYHLIVKNC NHFCEDICYK LTGSSIPKWV
NRLARIGSFC NCILPDALKT STVEHDPNFQ GCDSEKRRLR TAFSCLSSIS MPHKEVSMSS LFMHSHYKGC LPPWELKKSK
KGRLKQKLEE QFTSQ*