GBrowse Details

Vigan.09G224700.01

Basic Information:
Name: Vigan.09G224700.01
Multiple alignment
Variant Information
Position: Chr09:36631905..36634992 (+ strand)
Length: 3088
Functional Information:
Description: Similar to Post-illumination chlorophyll fluorescence increase isoform 3. [XP_007023203.1, Theobroma cacao]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:180.19,10.51,5.81,438.49,1.95,35.44,2.92,7.94
Arabidopsis thaliana homolog: AT3G15840.1
Automatic updates:
Name: NM_001253964 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100790141 (LOC100790141), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:36631905..36632027 (+ strand)
Length: 123
Type: five_prime_UTR
Position: Chr09:36632028..36632109 (+ strand)
Length: 82
Type: CDS
Position: Chr09:36632576..36632702 (+ strand)
Length: 127
Type: CDS
Position: Chr09:36632921..36633005 (+ strand)
Length: 85
Type: CDS
Position: Chr09:36633090..36633168 (+ strand)
Length: 79
Type: CDS
Position: Chr09:36633402..36633515 (+ strand)
Length: 114
Type: CDS
Position: Chr09:36633599..36633711 (+ strand)
Length: 113
Type: CDS
Position: Chr09:36634458..36634568 (+ strand)
Length: 111
Type: CDS
Position: Chr09:36634671..36634796 (+ strand)
Length: 126
Type: CDS
Position: Chr09:36634797..36634992 (+ strand)
Length: 196
Type: three_prime_UTR

>Vigan.09G224700.01 class=Sequence position=Chr09:36631905..36634992 (+ strand)
GCCACTTTCT ACACGCACAC TGGAAAATAT CATTTATCTC TTGCTATCTC TTGGCTATTA TAAATTTGGA CATGTTCTAT
TCTTAGATTT CACTTCTCTT CTTCAATATT CTGTCATACA TAAATGGCTG CAACCAATGC TTCTTTCTTT GCTTCTTCCA
CGCAGCCATG TTTGCCTGTG TCTCCAACCA TTTCAAACAC GCTATGTCAG TCTCTTTTAT CTCATTTTAT GCCATATTTT
GTCAACTATA GAGTGTTTTA TTTTGTACTA AAGTTTAGAT TTTGCTGCAA ATGGCCATGT GATTTGAATA TGCATATTTT
TTTATTATGG GTACTCTTAT GTGTTTATAT CTTCCTTGAT TGCTGCTAAA AGTCCAAACC TTTGTAGGAA TCAAAATTAG
CAATCATAAT CAGAACATTA ATAAAGCTAA AACCTGTTGT GTTCTCACAG TAGCCTTAAT ATCTGCGCTG ATCCTTTTCA
CAATTCCTTC CTTTAATTAT TTCTCACTTT AGTGGTAGCT GTTGAGTTGT TAGAACCCTT TTAATTTCAT GAGATGATTC
ATTAGTACTG AATTCTTTGA TAAATTTATA GCCAAATCTT TTTGTTCAAT TAGTTTTCTA ATCCCTTTCT GTACAGTGAA
AAGTTGTATG AACTAGTAAT TTCTCATGCA GCTAGTTCTT TTCTCAATGT GTCATTACCA AAAAGTTACC CTGTGAAGAA
AAATCATATG AAAATTAGCA AAAAGATCTG TGCTGCTGCT GTTGCAACAC CAACAACAAC TACTGAGGAA ATTAAAGAGT
ATGAATTCCC CCTTTTAATA ATACCATTTA CTACTTTAAG CTTAACTCAG TCACACGGTT TGTAAAATAA GGTTTGCATT
CAATTATATA CTTATATGTT TTAAATTAGT TTTATCTTTA ATTGGTGTGA ACTTTCAACA CATAAAAGTT ATACAAATAA
AAGTTAGTTT TGGATAAACT TATTATAATG GCATTATCTA CTGTTAATGT TTACAGGTAC AAGCTTCCTT CTTGGGCTCA
GTTTGAGATT GGAAGAGCTC CTGTGTATTG GAAAACAATG AATGGCCTCC CTCCTACCTC AGTAAGTGTA ACGTTTTGAG
TTAACTAATT GAAAAATGCA TCATAATCCA TTAACTTATA GTAAATATTT TACAAATTTT GGCAGGGAGA AAAGCTAAAG
CTTTTGTATA ATCCAGCAGC AGCTCAACTA GTCCCTAGTG AAGAATTTGG AATTGCTTTT AATGGTAATG TTTTGCAAGC
AAAATATTTG GATTCTTCAT GAACAAACAT AGAAAGTGTC AAGAACAAGT GACAAACTAC ACACTGTTAT TCTGAGTTAG
AAATTTATCA TATTTGAAGT TATTTCATAA AAGTTTCATA TCGAATAGAG ATAAAGTCAA TTTATAATAT ATATCAGTCG
ATTTTGTAAT TAAGTTGTGA TTAAGTTAGA CTGAATAGTA ACATTTCATC CATCCAGGAG GTTTTAATCA GCCAATTATG
TGCGGTGGTG AGCCAAGGGC TATGCTTCGA AAAAATAGAG GCAAAGCTGA TGCTCCAATA TATACCATTC AGATATGCAT
TCCAAAGCAT GGTAATATGA TGCTGTTGTT TCTGTGTGTA CTTTGCAGAC AAAACCATTC AATGTTATCT TGTTTACATC
TCTTTTTTGT GCAGCTCTGA ACTTGATCTT CTCATTTACT AATGGAGTAG ACTGGGATGG TCCATACAGA CTGCAATTTG
AAGTTCCTAA GGCTTTAAAG AACAAGCCAA TTGAGTTTTT TAATAGGGTA ATTGACACAA CTTTTCTCTC TTAATCAACT
TGCTCTAGTG GAATAGGGTA ATTTACATAG AGCTATCTAA TGGAAGATTC ATACATGTTT GATAATCTCA GATTTGATTT
AACATTACAA AATCTTATGC AAAAAAGAAG TTGGTGGCAA TACTATAGTT ATTGACCTCA AAAGAAAACA TTGGTGAAGT
GGTAAGGGAA TGAGTATTAT CTATTATTTC TACGGGAAAT CATAGGAAAA TAATCTCTTC AAGTCACAAG CACACCTACA
AATAAGAACA GAAATATAAA TAAAAACACA CCTCAAGGAC TACATGCACA TACATTCTTC CTGACAAAAT TTGCAAAATG
ACACAACTAT CCAAATCTCT CATATGTCAA AGAAACCTAT TGTGGTGATT TTTCTTAAAT AAATTCTTCA TTTCTATAAT
AACTTTCTTA TGATCTCTTC TTCGTATTAA TTAATGTTTC GGATATAGGA TAGAGAATCA CAGTAGAGTC ACCGATCGGC
TTAATGAGAA GTCGTCCGGT TTATAAAAAC TTAGGATTGG AAACAACTTT CCAATGTTCT TTTGGAAATG TTGATCAGAA
GCTCACGGAA GACCAGTCGA TCATACTGTA CAATTTAGAC AAAACTTTGA TGAATATCCA TTAAAGATCC ATCACGACAA
AATAACAACA TAACATTATG TGAGAATTTA GTACTTTTAT TTTCTGAACT GGGTGTGCTG TATTATGTGG CAGGGTTTGG
CAGATGAACT GAGTAAAGAA GGAGCATGTG AGCAGGCAAT ATTTCCAGAC ACAAACGTAG TTATATCAAG ATGTGCTATG
ATTGGTAATT TGTCAAAAGA AGGGGTGAGA ACATTCTTCT ATTCTTCAGT GTCTTTACTC TTTAACATGG TTCTTTTTCC
TTGAACACTT TCAGTTTCTT AATGATGAAT GAAAACATTG ATGCAGGGTG ATCGTTGCGA TCTGAATCTT GTTTTAGGAT
GCACAGATCC TAGTTCTCAC CTGTACAACC CACTAGCTAA TGTAGATGAT GGAACATGTC CAATTGATTT GGATTCTGAG
TCTGAGGATT AGCATTATAC TTTTCATGAA TATTCATTTG GATCATACTT TGTGTTGGTT TTAAGTACAT AGATAGTGTA
TATTGTATAT AAATTCACTC TTGAAATTGA ACATTGTCAT GTCTGGTTGT GGTCTTGAAA AAACTATGGT TTTGCTACAT
TATTTCTCTC TTTAATTTGT TACTGTTAAA ACATGTTTTC TCTTTCTC

>Vigan.09G224700.01
GCCACTTTCT ACACGCACAC TGGAAAATAT CATTTATCTC TTGCTATCTC TTGGCTATTA TAAATTTGGA CATGTTCTAT
TCTTAGATTT CACTTCTCTT CTTCAATATT CTGTCATACA TAAATGGCTG CAACCAATGC TTCTTTCTTT GCTTCTTCCA
CGCAGCCATG TTTGCCTGTG TCTCCAACCA TTTCAAACAC GCTATCTAGT TCTTTTCTCA ATGTGTCATT ACCAAAAAGT
TACCCTGTGA AGAAAAATCA TATGAAAATT AGCAAAAAGA TCTGTGCTGC TGCTGTTGCA ACACCAACAA CAACTACTGA
GGAAATTAAA GAGTACAAGC TTCCTTCTTG GGCTCAGTTT GAGATTGGAA GAGCTCCTGT GTATTGGAAA ACAATGAATG
GCCTCCCTCC TACCTCAGGA GAAAAGCTAA AGCTTTTGTA TAATCCAGCA GCAGCTCAAC TAGTCCCTAG TGAAGAATTT
GGAATTGCTT TTAATGGAGG TTTTAATCAG CCAATTATGT GCGGTGGTGA GCCAAGGGCT ATGCTTCGAA AAAATAGAGG
CAAAGCTGAT GCTCCAATAT ATACCATTCA GATATGCATT CCAAAGCATG CTCTGAACTT GATCTTCTCA TTTACTAATG
GAGTAGACTG GGATGGTCCA TACAGACTGC AATTTGAAGT TCCTAAGGCT TTAAAGAACA AGCCAATTGA GTTTTTTAAT
AGGGGTTTGG CAGATGAACT GAGTAAAGAA GGAGCATGTG AGCAGGCAAT ATTTCCAGAC ACAAACGTAG TTATATCAAG
ATGTGCTATG ATTGGTAATT TGTCAAAAGA AGGGGGTGAT CGTTGCGATC TGAATCTTGT TTTAGGATGC ACAGATCCTA
GTTCTCACCT GTACAACCCA CTAGCTAATG TAGATGATGG AACATGTCCA ATTGATTTGG ATTCTGAGTC TGAGGATTAG
CATTATACTT TTCATGAATA TTCATTTGGA TCATACTTTG TGTTGGTTTT AAGTACATAG ATAGTGTATA TTGTATATAA
ATTCACTCTT GAAATTGAAC ATTGTCATGT CTGGTTGTGG TCTTGAAAAA ACTATGGTTT TGCTACATTA TTTCTCTCTT
TAATTTGTTA CTGTTAAAAC ATGTTTTCTC TTTCTC

>Vigan.09G224700.01
ATGGCTGCAA CCAATGCTTC TTTCTTTGCT TCTTCCACGC AGCCATGTTT GCCTGTGTCT CCAACCATTT CAAACACGCT
ATCTAGTTCT TTTCTCAATG TGTCATTACC AAAAAGTTAC CCTGTGAAGA AAAATCATAT GAAAATTAGC AAAAAGATCT
GTGCTGCTGC TGTTGCAACA CCAACAACAA CTACTGAGGA AATTAAAGAG TACAAGCTTC CTTCTTGGGC TCAGTTTGAG
ATTGGAAGAG CTCCTGTGTA TTGGAAAACA ATGAATGGCC TCCCTCCTAC CTCAGGAGAA AAGCTAAAGC TTTTGTATAA
TCCAGCAGCA GCTCAACTAG TCCCTAGTGA AGAATTTGGA ATTGCTTTTA ATGGAGGTTT TAATCAGCCA ATTATGTGCG
GTGGTGAGCC AAGGGCTATG CTTCGAAAAA ATAGAGGCAA AGCTGATGCT CCAATATATA CCATTCAGAT ATGCATTCCA
AAGCATGCTC TGAACTTGAT CTTCTCATTT ACTAATGGAG TAGACTGGGA TGGTCCATAC AGACTGCAAT TTGAAGTTCC
TAAGGCTTTA AAGAACAAGC CAATTGAGTT TTTTAATAGG GGTTTGGCAG ATGAACTGAG TAAAGAAGGA GCATGTGAGC
AGGCAATATT TCCAGACACA AACGTAGTTA TATCAAGATG TGCTATGATT GGTAATTTGT CAAAAGAAGG GGGTGATCGT
TGCGATCTGA ATCTTGTTTT AGGATGCACA GATCCTAGTT CTCACCTGTA CAACCCACTA GCTAATGTAG ATGATGGAAC
ATGTCCAATT GATTTGGATT CTGAGTCTGA GGATTAG

>Vigan.09G224700.01
MAATNASFFA SSTQPCLPVS PTISNTLSSS FLNVSLPKSY PVKKNHMKIS KKICAAAVAT PTTTTEEIKE YKLPSWAQFE
IGRAPVYWKT MNGLPPTSGE KLKLLYNPAA AQLVPSEEFG IAFNGGFNQP IMCGGEPRAM LRKNRGKADA PIYTIQICIP
KHALNLIFSF TNGVDWDGPY RLQFEVPKAL KNKPIEFFNR GLADELSKEG ACEQAIFPDT NVVISRCAMI GNLSKEGGDR
CDLNLVLGCT DPSSHLYNPL ANVDDGTCPI DLDSESED*