GBrowse Details

Vigan.09G216500.01

Basic Information:
Name: Vigan.09G216500.01
Multiple alignment
Variant Information
Position: Chr09:36053683..36055268 (+ strand)
Length: 1586
Functional Information:
Description: Similar to Photosystem I psaH protein. [Q06H28, Arachis hypogaea]
GO: Biological Process: photosynthesis (GO:0015979)
Cellular Component: photosystem I (GO:0009522)
Cellular Component: photosystem I reaction center (GO:0009538)
InterPro: Photosystem I PsaH, reaction centre subunit VI (IPR004928)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.33,2.18,118.19,1634.71,0.58,144.28,4.27,195.64
Arabidopsis thaliana homolog: AT1G52230.1
Automatic updates:
Name: NM_001249689 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499832 (LOC100499832), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Name: NM_001254370 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max photosystem I reaction center subunit VI-2, chloroplastic-like (LOC100811201), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:36053683..36053956 (+ strand)
Length: 274
Type: five_prime_UTR
Position: Chr09:36053957..36054084 (+ strand)
Length: 128
Type: CDS
Position: Chr09:36054180..36054306 (+ strand)
Length: 127
Type: CDS
Position: Chr09:36054861..36055040 (+ strand)
Length: 180
Type: CDS
Position: Chr09:36055041..36055268 (+ strand)
Length: 228
Type: three_prime_UTR

>Vigan.09G216500.01 class=Sequence position=Chr09:36053683..36055268 (+ strand)
GCATATTTAA GAACAGTAGA TAAGCATATA TGTTGTATTT TCTGATGTTG CAATTGGACA AGAGTAAGAA GTGGATAAGC
TTATCCATCT TCAAGCAAGG TGTGACCTCA GGAATGAATT TCCAAATCTG CAGAAGTGAA TGCATGTGGC CACGTGGACA
CACGAGCTCC ATGTAACAGA TCAAAAACGC AAACTGCTAT GCCACCTGCT ACTGAAATAC TGATATTGCA GCACAAGAAA
AAGAGTCAGA AGAAGTGAAG AACATCACAT AATCATGGCT TCTCTTGCAA CCTTAGCTGC TGTTCAACCA GCTGCGATCA
ATGGCCTTGC TGGAAGCTCC CTCACTGGAA CTAAGCTCTC TTTCAAGCCC TCTCGTCAGA GTCTCAAATC CAAGAACTTC
AGGTTCCATG CATTGATTTG TAAAAAGTTT GCAATTTTAG AAGAAAATAT AGAAAAGTGT CGTGATTTAT GCTAAAGGGT
GTTGCTAAAT ATCACAGGAG TGGTGCTGTG GTAGCAAAGT ATGGTGACAA GAGTGTGTAC TTTGATTTGG AGGATTTGGG
TAACACCACA GGGCAGTGGG ACTTGTATGG CTCAGATGCA CCTTCACCCT ACAACTCTCT TCAGGTTTGT CTCATCTCTG
CATCTGCATA ATCAAACATG GATAACTAAA CATAATTCAC TGATATACAT GTATGTAATT TGATAAACAT AATTCAGATG
CATACCTTTT ATGTTTTTAA CGAGTATTGG AAATTCTAGT TAGTATAAGT CTTGTACTAA AATAACATTA AGCATTATAT
ATGTATATAT ATGTGGACTA AGATGGATAA ACTCATTGTT TTAAGGTTTT GGATGGTGTT TGAATGATGT TGTGTTTTAA
GGTTTTGGAT GATGTTTTGG GTGATGTTGT ATAAGGTTTT GGATGGTTTT GTATTTCCCT GAGAGACCTA TCACAACTAA
GTATAGAAAA CTCTCCTTGC TGATCAACTG AATATTGAGT CTAATTTGAT CAATCTTTTC TGTGATGTAA CTTAAATTGG
ATGATTAATA TGACAGTTAT GATAAGATTC TATATTTCTG ATTAGTTAGT GGTGTAAAAA GAATTAAACT TTATACTCAA
ACAAATATTT CATGCATGAA CAAACTACTT ACAAGTTTCA TTGATATGGA TTATGCAGAG CAAGTTCTTT GAGACATTTG
CTGCTCCATT CACAAAGAGA GGATTGCTAC TCAAGTTTCT GATATTGGGA GGTGGATCCA CCTTGGCATA CTTCAGTGCA
ACAGCCTCAG GTGATATTCT ACCAATCAAG AAGGGTCCAC AACTTCCACC AAAGCTTGGC CCTCGTGGCA AGCTCTAATT
TGATTTGTAT CAGAACTCAA TCTGTTGAGT TCCTTTGTAT TTTTTTTTCT GGTTTGAATG ATGTGTAAGT ATGCTCACAG
ACCACTATTC AAAGATGCTT CTTTCCAGTC TCATTGAGTG GCATTACTTT GGTTTTCAAT TAAAGCAAAG ACATGAATGT
TTGCCTTATT ACCTCTTCAA TATGTTTGAT TCTCCATCAT GTTAATAAAT TAGCACAAGA AGTTTG

>Vigan.09G216500.01
GCATATTTAA GAACAGTAGA TAAGCATATA TGTTGTATTT TCTGATGTTG CAATTGGACA AGAGTAAGAA GTGGATAAGC
TTATCCATCT TCAAGCAAGG TGTGACCTCA GGAATGAATT TCCAAATCTG CAGAAGTGAA TGCATGTGGC CACGTGGACA
CACGAGCTCC ATGTAACAGA TCAAAAACGC AAACTGCTAT GCCACCTGCT ACTGAAATAC TGATATTGCA GCACAAGAAA
AAGAGTCAGA AGAAGTGAAG AACATCACAT AATCATGGCT TCTCTTGCAA CCTTAGCTGC TGTTCAACCA GCTGCGATCA
ATGGCCTTGC TGGAAGCTCC CTCACTGGAA CTAAGCTCTC TTTCAAGCCC TCTCGTCAGA GTCTCAAATC CAAGAACTTC
AGGAGTGGTG CTGTGGTAGC AAAGTATGGT GACAAGAGTG TGTACTTTGA TTTGGAGGAT TTGGGTAACA CCACAGGGCA
GTGGGACTTG TATGGCTCAG ATGCACCTTC ACCCTACAAC TCTCTTCAGA GCAAGTTCTT TGAGACATTT GCTGCTCCAT
TCACAAAGAG AGGATTGCTA CTCAAGTTTC TGATATTGGG AGGTGGATCC ACCTTGGCAT ACTTCAGTGC AACAGCCTCA
GGTGATATTC TACCAATCAA GAAGGGTCCA CAACTTCCAC CAAAGCTTGG CCCTCGTGGC AAGCTCTAAT TTGATTTGTA
TCAGAACTCA ATCTGTTGAG TTCCTTTGTA TTTTTTTTTC TGGTTTGAAT GATGTGTAAG TATGCTCACA GACCACTATT
CAAAGATGCT TCTTTCCAGT CTCATTGAGT GGCATTACTT TGGTTTTCAA TTAAAGCAAA GACATGAATG TTTGCCTTAT
TACCTCTTCA ATATGTTTGA TTCTCCATCA TGTTAATAAA TTAGCACAAG AAGTTTG

>Vigan.09G216500.01
ATGGCTTCTC TTGCAACCTT AGCTGCTGTT CAACCAGCTG CGATCAATGG CCTTGCTGGA AGCTCCCTCA CTGGAACTAA
GCTCTCTTTC AAGCCCTCTC GTCAGAGTCT CAAATCCAAG AACTTCAGGA GTGGTGCTGT GGTAGCAAAG TATGGTGACA
AGAGTGTGTA CTTTGATTTG GAGGATTTGG GTAACACCAC AGGGCAGTGG GACTTGTATG GCTCAGATGC ACCTTCACCC
TACAACTCTC TTCAGAGCAA GTTCTTTGAG ACATTTGCTG CTCCATTCAC AAAGAGAGGA TTGCTACTCA AGTTTCTGAT
ATTGGGAGGT GGATCCACCT TGGCATACTT CAGTGCAACA GCCTCAGGTG ATATTCTACC AATCAAGAAG GGTCCACAAC
TTCCACCAAA GCTTGGCCCT CGTGGCAAGC TCTAA

>Vigan.09G216500.01
MASLATLAAV QPAAINGLAG SSLTGTKLSF KPSRQSLKSK NFRSGAVVAK YGDKSVYFDL EDLGNTTGQW DLYGSDAPSP
YNSLQSKFFE TFAAPFTKRG LLLKFLILGG GSTLAYFSAT ASGDILPIKK GPQLPPKLGP RGKL*