GBrowse Details

Vigan.09G216300.01

Basic Information:
Name: Vigan.09G216300.01
Multiple alignment
Variant Information
Position: Chr09:36017451..36020551 (- strand)
Length: 3101
Functional Information:
Description: Similar to thylakoid membrane phosphoprotein 14 kDa, chloroplastic-like isoform X2. [XP_004506839.1, Cicer arietinum]
InterPro: Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain (IPR025564)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.38,4.35,41.02,123.58,12.55,46.57,4.07,40.09
Arabidopsis thaliana homolog: AT1G52220.1
Automatic updates:
Name: NM_001248818 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306487 (LOC100306487), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249588 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305776 (LOC100305776), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:36017451..36017803 (- strand)
Length: 353
Type: three_prime_UTR
Position: Chr09:36017804..36017858 (- strand)
Length: 55
Type: CDS
Position: Chr09:36018210..36018247 (- strand)
Length: 38
Type: CDS
Position: Chr09:36018340..36018402 (- strand)
Length: 63
Type: CDS
Position: Chr09:36019136..36019222 (- strand)
Length: 87
Type: CDS
Position: Chr09:36019321..36019415 (- strand)
Length: 95
Type: CDS
Position: Chr09:36020244..36020343 (- strand)
Length: 100
Type: CDS
Position: Chr09:36020344..36020551 (- strand)
Length: 208
Type: five_prime_UTR

>Vigan.09G216300.01 class=Sequence position=Chr09:36017451..36020551 (- strand)
ACTCCTTGCA GTGGAATATT CTGTCTTACT TAAACGTCTT TTGCAGCAGT AGAGTAATAC AATGACAGTA CAAACAAGGA
AATCTTACTT TTGATTTCTG TCATCTGATT ATCATTGGAG GCTCTGATTT CTGTCATCTG ATTATCATAG GAGGGGAAAC
TTAGCCAAAG TTGTTGTCTT TTTTGTAATT TTGATTAGTG TTGTTCAAAT GGCTTCCATT GTTGCAAGCT TGTTGCCACC
ATTGCTGCTC CCATCTAGAA ATTCACAGCC AGGAACCTTC CCAACTTTCC CTGTTTCTCT TCTTTCAGGT AACCCTTTGC
TTTTATTTTG CTTTTCTTTC AATGTTGAGA TTTGTTCTCC CACAGACAGC ATAGGGTTTT TAATTTTTCA AGCATACTTG
GTTTAACTCA AAGTGGAATC CTTGAGAAGA TGAACTGGGA AGTTTAGTTT CAAATAGAAT TTTTTGATTA TTTAGAAGGT
ATTCATAAAG GAGAAATAGT TAGGTTTTCC TCTGCATAGC TATTGTGGTC AAATGATATC ATTGCCAAGG TTGAACTGTA
AAACCATCTG CATGTATTTG GAAATTGGCA TTTGTCTGTC TGTGGAAATT AAAATTTAAC TGGAAATCTC AGTGTAAGTG
ATTTTTTGGC ATGATTATGC ACTCTGGCAC TATGTACAAC TCATGAGATT TTCGCATTAG GTTCTATTCT GCCATAATGT
ATGTTGCTTG GATACTTTTC ATGCATAAAG GGGTCAATTT TGATTTACAT TGGCTCACTG TTGTGTGAAA AAAATTGCTA
GCTTATTGAT TACATACAAC TTCGGCTGAT TTGTGTTAGA GCGGGAATCT AAGTGTAAGT TCAAGTTTCA CATTAGATAG
AAATGAAAAA GTAGAGCACT TTGGTAAAAG ATCCATTAAC TCATTGTTTT AAGGTTTTCG ATAGAAAATA GTGTTAATTC
CTTATGGTTG GACTTAGATC TCATTGGTAT TGTGTAGTTC CTTTGTTGGA GGGGGAGTGT ACTAATGTGA AAGAGATTCA
TCTTTTAGGG GGAGACTGTT GGAATCCAAG TATGAGTCCA ATTGTTTGTA TCATTTATGT ATCAGATTCT TGATTTTCAT
TCTGCTTACA TCACAGGGAG ACGGAGTAAT GTTTCTTTGG TTGTGAAGGC TTCTGGGGAA AGTTCTGAAT CTGCAACTTC
CCTTACTGTT TTTAAGTCCG TACAGAATGT TGTGAGTTAT TCCTCTCAGT CTTATCCATC TTGTCCCTCT TTCAAAGTGA
CACAGAAGGT ATGATATACC TATGTTACTG TTTACTGGTT TTGAAACAGT GGGATCAACC TGAAGACCGT CTGGGACTTT
TTGGGTTGGG ATTTGCAGCT GTAGCAGCGT TTTGGGCGTC AACAAATTTG GTTGCGGTAA CCTTTTCCAC TTTCAGTGTT
TTGGAATGAA TACATGATTG AAATATTTTT GGATATGATG ACATAGTATT AGATATTTCT TGTTCTGACA GCTATGCAAC
TTTTCTTAAA ATGTGTAGGA TACAGTAGTT TGCTACTGGA TACAGTTGAA ATTTGATAAG GCATAATAAA TATATAATTG
TCACCATTTT AGATCATTGT TAACTACTCA TTTGCTTATT GCCTAGAGGT AAGAGTAGAG AGATTTCAAA CTTATTCTGT
TCTCGAGAGT CATCCATGCA GAGGATAATT TCTATTTTTG GGTCACCAAG AGACAGTGCT TCTATATTTC TCTCTTATGT
ACACTTTTAT GTTCCGTATC TTGTTGTATT AGATTCTCAT AGCATTTTTT AAAGGTTTGG ATACTCCATT GATATGCATT
GGTAAAAATT GTGATGCAAG TGCAAGTGCT TCATAGAGCA TGGGCTGATA TGGCCACTGC TACAAAAAAT TGATCTGATG
GTAGAAGAAC AAATCCATTT GGGTTATAAC AGTTGATCCA CAAATAAATC TTTATTAAGG ATTTGAAAAG CTCTTTTAAG
TGAAAACTGC TTCACAATGA CATTCCTTCT TCCTTTTTTG ATTTGCCTGT TGAACCTGTA CATATTTTTA CTATGAAAAG
TAAGTGTTCG TGGACTTTAT TCAAAGGTTT GCACCCTGCT GATTTTGTTT TTGTCATTTT TGTTTGCAGG CCATTGACAA
ATTACCACTT TTCCCAGCTG TATTTGAACT AATTGGAATA TTTTACTCTG TGGTAAGCGC TGTGCTGCAT AATTGACTTG
TGTTTCAATT AATGTCAGTT ATTTAAATTT GGCAAGTGAT GCAAACTTTT TCCTTTTATT TCAGTGGTTT ACTTATCGCT
ATCTCGTATT CAAGCCTGAC CGGTAAGTAT ATTGCTCCCC TTTATTCTGA TTTTCATCAT CACTTTGCTT AATATTAAGC
ACATACAAGA TTAAGACCCC TGATCTCATT AAAAAATTGT GTAAAGTAAA AGAAAATTTT GAAATGGATT ACATTTACAG
TAAAAGGCCT ATTGACCACT ATATTGATTA ATACTGTCAT AAACTGGTGG TGATTTACTA CATAATAAAG AGATTAATCT
CACATAGTGA ATTTTTTTCT TTTTATAAAT TAGACCCTTC ACTGATTCTT TTCAAGTTAA ATCCCAGTGA AAAGGTTTAG
CTTCTAGAGC ACTCAGTTTG GAAGCAGCTT CACTTGATTT TTTCTGATTA CAGGGAAGAG CTTTTTCAAA TCTTGAACAA
GTCAGCAACA GATATCTTGG GCCAGTAAAA TGTGCTACCA AAATGCTATG CTAGATTGGG AGGAAAAGCT GGTTAAGGAG
AGGGAGGGGA AAGAGGGATT TGACTGTCAT CACTCCTATG CAAACTTCAA TGCAAGGATT AACTATATGT TTAAAGATCA
GTACATTATT ACATCAATGA ATTAAAGCTT ACTTTTTTGT GCTGGGTTAG CTTCTTTGCA TATAATTTTT AATGAAGTTC
CCTTGAGCAT AAAACTAATA AGAGTAATAC TAGCCTAAAT AATGCCCAGA AAAAAGGAAT TGTTCACTTG AGTGCAGCAA
TCAATAGGTG AAGAACAGGG TTTTAAAAGA TGGTCTATGT TTGATCACAA TTTTAGCCAC T

>Vigan.09G216300.01
ACTCCTTGCA GTGGAATATT CTGTCTTACT TAAACGTCTT TTGCAGCAGT AGAGTAATAC AATGACAGTA CAAACAAGGA
AATCTTACTT TTGATTTCTG TCATCTGATT ATCATTGGAG GCTCTGATTT CTGTCATCTG ATTATCATAG GAGGGGAAAC
TTAGCCAAAG TTGTTGTCTT TTTTGTAATT TTGATTAGTG TTGTTCAAAT GGCTTCCATT GTTGCAAGCT TGTTGCCACC
ATTGCTGCTC CCATCTAGAA ATTCACAGCC AGGAACCTTC CCAACTTTCC CTGTTTCTCT TCTTTCAGGG AGACGGAGTA
ATGTTTCTTT GGTTGTGAAG GCTTCTGGGG AAAGTTCTGA ATCTGCAACT TCCCTTACTG TTTTTAAGTC CGTACAGAAT
GTTTGGGATC AACCTGAAGA CCGTCTGGGA CTTTTTGGGT TGGGATTTGC AGCTGTAGCA GCGTTTTGGG CGTCAACAAA
TTTGGTTGCG GCCATTGACA AATTACCACT TTTCCCAGCT GTATTTGAAC TAATTGGAAT ATTTTACTCT GTGTGGTTTA
CTTATCGCTA TCTCGTATTC AAGCCTGACC GGGAAGAGCT TTTTCAAATC TTGAACAAGT CAGCAACAGA TATCTTGGGC
CAGTAAAATG TGCTACCAAA ATGCTATGCT AGATTGGGAG GAAAAGCTGG TTAAGGAGAG GGAGGGGAAA GAGGGATTTG
ACTGTCATCA CTCCTATGCA AACTTCAATG CAAGGATTAA CTATATGTTT AAAGATCAGT ACATTATTAC ATCAATGAAT
TAAAGCTTAC TTTTTTGTGC TGGGTTAGCT TCTTTGCATA TAATTTTTAA TGAAGTTCCC TTGAGCATAA AACTAATAAG
AGTAATACTA GCCTAAATAA TGCCCAGAAA AAAGGAATTG TTCACTTGAG TGCAGCAATC AATAGGTGAA GAACAGGGTT
TTAAAAGATG GTCTATGTTT GATCACAATT TTAGCCACT

>Vigan.09G216300.01
ATGGCTTCCA TTGTTGCAAG CTTGTTGCCA CCATTGCTGC TCCCATCTAG AAATTCACAG CCAGGAACCT TCCCAACTTT
CCCTGTTTCT CTTCTTTCAG GGAGACGGAG TAATGTTTCT TTGGTTGTGA AGGCTTCTGG GGAAAGTTCT GAATCTGCAA
CTTCCCTTAC TGTTTTTAAG TCCGTACAGA ATGTTTGGGA TCAACCTGAA GACCGTCTGG GACTTTTTGG GTTGGGATTT
GCAGCTGTAG CAGCGTTTTG GGCGTCAACA AATTTGGTTG CGGCCATTGA CAAATTACCA CTTTTCCCAG CTGTATTTGA
ACTAATTGGA ATATTTTACT CTGTGTGGTT TACTTATCGC TATCTCGTAT TCAAGCCTGA CCGGGAAGAG CTTTTTCAAA
TCTTGAACAA GTCAGCAACA GATATCTTGG GCCAGTAA

>Vigan.09G216300.01
MASIVASLLP PLLLPSRNSQ PGTFPTFPVS LLSGRRSNVS LVVKASGESS ESATSLTVFK SVQNVWDQPE DRLGLFGLGF
AAVAAFWAST NLVAAIDKLP LFPAVFELIG IFYSVWFTYR YLVFKPDREE LFQILNKSAT DILGQ*