GBrowse Details

Vigan.09G215000.01

Basic Information:
Name: Vigan.09G215000.01
Multiple alignment
Variant Information
Position: Chr09:35915825..35917915 (+ strand)
Length: 2091
Functional Information:
Description: Similar to aquaporin TIP2-1-like. [XP_004516306.1, Cicer arietinum]
GO: Biological Process: transport (GO:0006810)
Cellular Component: membrane (GO:0016020)
Molecular Function: transporter activity (GO:0005215)
InterPro: Major intrinsic protein (IPR000425)
Major intrinsic protein, conserved site (IPR022357)
Aquaporin-like (IPR023271)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.69,3.53,44.45,49.27,1.95,29.28,111.40,188.55
Automatic updates:
Name: NM_001250472 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306092 (LOC100306092), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:35915825..35915982 (+ strand)
Length: 158
Type: five_prime_UTR
Position: Chr09:35915983..35916109 (+ strand)
Length: 127
Type: CDS
Position: Chr09:35916365..35916615 (+ strand)
Length: 251
Type: CDS
Position: Chr09:35917370..35917738 (+ strand)
Length: 369
Type: CDS
Position: Chr09:35917739..35917915 (+ strand)
Length: 177
Type: three_prime_UTR

>Vigan.09G215000.01 class=Sequence position=Chr09:35915825..35917915 (+ strand)
CCAAAACTTA ACATTGTATT TGATAATTAA CTTCTGCTGC ATATATATAT ATATAACCCC AACAGAGAAG CTTTTTGTAC
TACTACCTTT CTTATTTGTA ACATTTCCTT GTCTATCCTG TCCTCTAATT TTAACAGTTC CCCTAGAAAG TTCTGAAGAT
GGGTGGCATT GCCTTCGGAC GTTTGGATGA TTCTTTCAGT TTAAGCTCAA TCAAGGCCTA TATTGCTGAG TTCCATTCAA
CCTTGCTCTT TGTTTTTGCC GGTGTTGGTT CAGCCATAGC CTATGGTTAG TTTTCTGGTT TCACAACAAA ATTTAATCCA
AGATCTCAGT CTCAACCCCA CCACTCCTTT GTAATTTTAG TCCCATTCAA GGTGTTTCAC CATGATTAAA CATAAAACAA
CCCTTAAAAA TAAGAGAAAA CTGATGAAAC AATGTTTGTT TTGGCTTGTA ATTGTCACCA TGTAGAAGTT TACAAATTTT
TCATTTTGAA ACCGTGGTGC TTAGTTTCAA CATGTTTGGC TGTTTTGTTT TCACTTGTAG GTAAGTTGAC ATCAGATGCA
GCACTCGATC CTGCTGGGTT ACTGGCAGTT GCTATTTGCC ACGGTTTTGC ACTTTTTGTT GCAGTTTCTG TTGGTGCCAA
CATCTCTGGT GGCCATGTCA ACCCTGCTGT GACTTTTGGA TTGGCTCTTG GTGGCCACAT CACCATCCTC ACAGGCATAT
TCTACTGGAT TGCACAGCTT CTTGGCTCCA TCGTGGCCTG TTTTCTTCTC AGCTATGTCA CAGGAGGTTT GGTAAGTTTC
AATTGAAAGA ATCTACACAT GGCTACCTCA ATTTGGCAAA TCTTTTCCTT GCATTATACA AGCTTCATGC ATAAACCAAG
GACATATTTA CATGTCCTTT TTTCTATCAC TTTGTGAAGA GACCATAATT ATGATTCTGC TACGGGTAAG ATGCATAAGT
AGTAAAAAAA ATATTATTTC AAGCACCTAA ATTTTTTACA TTCATTTGAC ACCATTTTTT CTTATTTTTT ACTCTCTTTT
TCCTTAAAAA AAATACAAAA GTTTACAATT TTATAACTAT TTTATCCTTA TACTATATAT CAATAAAAAT GTATCATGAT
ATCGTTACTT TTTAAGTAGT ATGTCCCGAA GGTACATCTA TTTAATGTAA TAATATATAT ACAATAATAA CAAAAAAAAT
TTCACAACAA ATATTGATAA GCATAACTAT AACTCATAAG ATATGAATAA AGTCTTACAT AGAATAAAAG AGAAGAGATG
AACCTGAATT TATACACAGA GATCCAATGG TACCAAAAAC ACATTTTTGA GCTGTTGACC CACTTCCTAA AACATTTTTC
TCTCATCTTT TCTTTAATAT GAGCTACACC GATGTATATA TTATATTACC ATCTTGTATG AAGCTAGTAT TCAAACATCA
TTAACATTCT CAATTTTTTT ATGGTATCAG ACACTTGTAA ATAATAGGAC GATCGATGTT TAGTTTATTT AGACGAAAAA
CTGAATTGTT GTTATTTGTT GGCAGGCAAT TCCAGTTCAC AGTGTGGCTT CTGGGGTTGG AGTTGTTGAA GGAGTTGTTA
CAGAGATCAT AATCACATTT GGTTTGGTGT ACACTGTATA CGCCACAGCA GCTGATCCTA AGAAGGGTTC ATTGGGCACG
ATTGCACCCA TTGCCATTGG TTTCATTGTT GGTGCGAACA TCTTGGCAGC AGGGCCATTC TCAGGTGGCT CAATGAACCC
TGCACGCTCC TTTGGCCCTG CAGTTGTGAG TGGTGACTTC CATGACAACT GGATCTACTG GGTCGGACCT CTTGTCGGTG
GTGGTTTGGC TGGCCTCATC TATGGCAATG TCTTCATTCG CTCTGACCAT GCACCTCTTT CCACTGAATT TTGACTCCAT
TGGGAGATCA TGGCCTCTGT AATATTCATG TTTCTTCATA ATAAAAGTAG GATAAGCAAT TCTTGCTTTT CTTGCTTTTT
CTAGTGTATG TTTTTCCTTC TTGTAATTTA TTTGTAAAGT GTGCTACTGT TTAATTTGGT GAGAATTCAA AGAGGTTGGT
GGTGTGCAGA A

>Vigan.09G215000.01
CCAAAACTTA ACATTGTATT TGATAATTAA CTTCTGCTGC ATATATATAT ATATAACCCC AACAGAGAAG CTTTTTGTAC
TACTACCTTT CTTATTTGTA ACATTTCCTT GTCTATCCTG TCCTCTAATT TTAACAGTTC CCCTAGAAAG TTCTGAAGAT
GGGTGGCATT GCCTTCGGAC GTTTGGATGA TTCTTTCAGT TTAAGCTCAA TCAAGGCCTA TATTGCTGAG TTCCATTCAA
CCTTGCTCTT TGTTTTTGCC GGTGTTGGTT CAGCCATAGC CTATGGTAAG TTGACATCAG ATGCAGCACT CGATCCTGCT
GGGTTACTGG CAGTTGCTAT TTGCCACGGT TTTGCACTTT TTGTTGCAGT TTCTGTTGGT GCCAACATCT CTGGTGGCCA
TGTCAACCCT GCTGTGACTT TTGGATTGGC TCTTGGTGGC CACATCACCA TCCTCACAGG CATATTCTAC TGGATTGCAC
AGCTTCTTGG CTCCATCGTG GCCTGTTTTC TTCTCAGCTA TGTCACAGGA GGTTTGGCAA TTCCAGTTCA CAGTGTGGCT
TCTGGGGTTG GAGTTGTTGA AGGAGTTGTT ACAGAGATCA TAATCACATT TGGTTTGGTG TACACTGTAT ACGCCACAGC
AGCTGATCCT AAGAAGGGTT CATTGGGCAC GATTGCACCC ATTGCCATTG GTTTCATTGT TGGTGCGAAC ATCTTGGCAG
CAGGGCCATT CTCAGGTGGC TCAATGAACC CTGCACGCTC CTTTGGCCCT GCAGTTGTGA GTGGTGACTT CCATGACAAC
TGGATCTACT GGGTCGGACC TCTTGTCGGT GGTGGTTTGG CTGGCCTCAT CTATGGCAAT GTCTTCATTC GCTCTGACCA
TGCACCTCTT TCCACTGAAT TTTGACTCCA TTGGGAGATC ATGGCCTCTG TAATATTCAT GTTTCTTCAT AATAAAAGTA
GGATAAGCAA TTCTTGCTTT TCTTGCTTTT TCTAGTGTAT GTTTTTCCTT CTTGTAATTT ATTTGTAAAG TGTGCTACTG
TTTAATTTGG TGAGAATTCA AAGAGGTTGG TGGTGTGCAG AA

>Vigan.09G215000.01
ATGGGTGGCA TTGCCTTCGG ACGTTTGGAT GATTCTTTCA GTTTAAGCTC AATCAAGGCC TATATTGCTG AGTTCCATTC
AACCTTGCTC TTTGTTTTTG CCGGTGTTGG TTCAGCCATA GCCTATGGTA AGTTGACATC AGATGCAGCA CTCGATCCTG
CTGGGTTACT GGCAGTTGCT ATTTGCCACG GTTTTGCACT TTTTGTTGCA GTTTCTGTTG GTGCCAACAT CTCTGGTGGC
CATGTCAACC CTGCTGTGAC TTTTGGATTG GCTCTTGGTG GCCACATCAC CATCCTCACA GGCATATTCT ACTGGATTGC
ACAGCTTCTT GGCTCCATCG TGGCCTGTTT TCTTCTCAGC TATGTCACAG GAGGTTTGGC AATTCCAGTT CACAGTGTGG
CTTCTGGGGT TGGAGTTGTT GAAGGAGTTG TTACAGAGAT CATAATCACA TTTGGTTTGG TGTACACTGT ATACGCCACA
GCAGCTGATC CTAAGAAGGG TTCATTGGGC ACGATTGCAC CCATTGCCAT TGGTTTCATT GTTGGTGCGA ACATCTTGGC
AGCAGGGCCA TTCTCAGGTG GCTCAATGAA CCCTGCACGC TCCTTTGGCC CTGCAGTTGT GAGTGGTGAC TTCCATGACA
ACTGGATCTA CTGGGTCGGA CCTCTTGTCG GTGGTGGTTT GGCTGGCCTC ATCTATGGCA ATGTCTTCAT TCGCTCTGAC
CATGCACCTC TTTCCACTGA ATTTTGA

>Vigan.09G215000.01
MGGIAFGRLD DSFSLSSIKA YIAEFHSTLL FVFAGVGSAI AYGKLTSDAA LDPAGLLAVA ICHGFALFVA VSVGANISGG
HVNPAVTFGL ALGGHITILT GIFYWIAQLL GSIVACFLLS YVTGGLAIPV HSVASGVGVV EGVVTEIIIT FGLVYTVYAT
AADPKKGSLG TIAPIAIGFI VGANILAAGP FSGGSMNPAR SFGPAVVSGD FHDNWIYWVG PLVGGGLAGL IYGNVFIRSD
HAPLSTEF*