GBrowse Details

Vigan.09G211000.01

Basic Information:
Name: Vigan.09G211000.01
Multiple alignment
Variant Information
Position: Chr09:35589648..35591769 (+ strand)
Length: 2122
Functional Information:
Description: Similar to GDSL esterase/lipase APG-like. [XP_003531641.2, Glycine max]
GO: Biological Process: lipid metabolic process (GO:0006629)
Molecular Function: hydrolase activity (GO:0016787)
Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788)
InterPro: Lipase, GDSL (IPR001087)
SGNH hydrolase-type esterase domain (IPR013831)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.65,1.13,284.94,255.42,0.10,75.72,0.59,90.84
Arabidopsis thaliana homolog: AT3G16370.1
Automatic updates:
Name: NM_001255632 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max GDSL esterase/lipase APG-like (LOC100815273), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:35589648..35589979 (+ strand)
Length: 332
Type: five_prime_UTR
Position: Chr09:35589980..35590298 (+ strand)
Length: 319
Type: CDS
Position: Chr09:35590428..35590558 (+ strand)
Length: 131
Type: CDS
Position: Chr09:35590638..35590871 (+ strand)
Length: 234
Type: CDS
Position: Chr09:35591118..35591373 (+ strand)
Length: 256
Type: CDS
Position: Chr09:35591448..35591644 (+ strand)
Length: 197
Type: CDS
Position: Chr09:35591645..35591769 (+ strand)
Length: 125
Type: three_prime_UTR

>Vigan.09G211000.01 class=Sequence position=Chr09:35589648..35591769 (+ strand)
TTTTTCTGTA CAACAACCGA AATAACTCAT GCACATGCTT CTCTCTAATC CCTCCCACAA AATCTCAACC ACTTAGCTCC
ACCATAGTAA ATGAAAGAAG CTAAAAGTCA TTGTATTAGG GACTTGAGAG TGATTGATTA GTTCTGGTAA AAAAATCGCA
GAGAGAGTGA TCACTAAGCA GCTTATAATA TGCATTGAAT TAACCAGAAG AGACAAGTAA GATATTAGTA TCATCAATGG
AGAGAGAGAA TAAGAGAAAT TGTATATAAT GAACCACTTT ACGCGTTCAC ATTTAATAGC CGTGCCTAAC TCCCATCCTC
CTCCTTCAAT AGATGTCATT TTCAGTTGTC ATATATAAGT TCTCCATTTT CTGCTGCACT CAGTGCATCC AAAACCAGAA
TAGCATCATG ATGAACATTG CACTTCTTGT TCAACTCTTT GCATTTTCCT TCCTTAGTTG TGTGTATGCA CAAGACACCA
CCACCCTTGT GCCTGCCATC GTAACATTTG GTGATTCTGC TGTGGATGTA GGAAATAATG ACTATCTTCC CACAATTTAT
AAGGCTAATT ACCCTCCCTA TGGGAGAGAC TTTGCTAACC ACCAACCAAC TGGGAGGTTC TGCAATGGCA AATTAGCTAC
TGATATCACT GGTATGGCAA AATTAAACCT TTAAAGATCA AACTTGCACC TACTTTATAG AGTAGATTAG ATATATATGT
AGCACTGCTC ATACTCATGC ATTTAAGTTT CATTATTGTT GGAATGTTTC CTTTTTGCAG CTGAGACGTT GGGTTTTAAG
ACCTATGCTC CTGCATATCT TAGCCCACAG GCGTCAGGGA AAAACCTCCT TATTGGAGCA AACTTTGCTT CTGCTGCATC
TGGTTATGAT GAAAATGCTG CTATTTTGAA TGTAAGTTTG GAGTGAATAA CTTCATGTAT GGTTTTACAA GAATTCTGGT
TTTAACAGTT TCTTTTATTC CTCTGGGCAG CATGCAATTC CATTGTCCCA ACAGTTAAGT TATTTCAAGG AATACCAAGG
CAAGCTGGCC AAGGTAGCTG GCAGTCAAAA GGCAGCCTCA ATTATCAAAG ATGCATTGTA CGTGCTCAGT GCTGGCAGCA
GCGACTTTGT GCAAAACTAT TACGTCAATC CTTGGATCAA CAAAGTATAC ACACCTGACC AGTATGGCTC CTTCTTAGTT
GGTTCGTTCA CCAGTTTTGT TAAGGTATTA TGTCAAACTG ATTTGGTTGG TTATTTTTGC TACTGTTAGA ACATATGTGA
GTATGTGTGT GTGTGTTATT ACTAAAAAAG TCCCATGACA AGTAAAAGTT CTATATCAGA TAGAGGGGAT GTGTTCAATT
GGTTCCAATC TTTTGAACAA CATACCTAAT GTTTGGTACA GATCAGACCA GTCTACATTC AACTCAAGAA TTAGTCCAAC
GTTGAAAAAC TAACTTTGTT TTCGACACAG GACTTGTATA AATTGGGAGG CAGGAGACTT GGAGTGACTT CACTCCCACC
ATTGGGTTGC CTACCTGCTG CAAGGACTTT ATTTGGTTTC CATGAGAATG GTTGTGTCTC AAGAATCAAC TCTGATGCCC
AAGCATTTAA CAAGAAGATC AACTCAGCTG TAGCAAATCT TCAAAAGCAA CTTCCGGGTC TCAAGATTGC TGTTTTTGAC
ATTTACAAGC CTCTCTATGA CCTTGTTCAA TCCCCTTCAA AATTTGGTAC TAATATTCAC TATTCAACAT TGCAGTAAAA
TGATATTGTT CTCTCTAACC TATGGCACGA TGCTTTGCAG GTTTTGTGGA GGCAAACAGA GGTTGCTGTG GTACCGGGAC
TGTGGAGACA ACATCTTTGT TGTGTAATCA AAAATCACCT GGAACTTGTT CTAATGCCAC CCAGTATGTG TTTTGGGATA
GTGTCCATCC TTCACAAGCA GCTAACCAAG TTCTAGCTGA TTCATTAATT ATCCAAGGCA TAAGTCTTAT CACATAAAGA
GTCGTGATTA TTTGTGTGGA GATAGTATTG TGTACTACTA CACAGCGTGA AAGTGATTCA ATGTTTGCTG TTTTTCCTTT
GTATGGACAA AGAATTGCTC TATGTATTTC AGATCATGAG AA

>Vigan.09G211000.01
TTTTTCTGTA CAACAACCGA AATAACTCAT GCACATGCTT CTCTCTAATC CCTCCCACAA AATCTCAACC ACTTAGCTCC
ACCATAGTAA ATGAAAGAAG CTAAAAGTCA TTGTATTAGG GACTTGAGAG TGATTGATTA GTTCTGGTAA AAAAATCGCA
GAGAGAGTGA TCACTAAGCA GCTTATAATA TGCATTGAAT TAACCAGAAG AGACAAGTAA GATATTAGTA TCATCAATGG
AGAGAGAGAA TAAGAGAAAT TGTATATAAT GAACCACTTT ACGCGTTCAC ATTTAATAGC CGTGCCTAAC TCCCATCCTC
CTCCTTCAAT AGATGTCATT TTCAGTTGTC ATATATAAGT TCTCCATTTT CTGCTGCACT CAGTGCATCC AAAACCAGAA
TAGCATCATG ATGAACATTG CACTTCTTGT TCAACTCTTT GCATTTTCCT TCCTTAGTTG TGTGTATGCA CAAGACACCA
CCACCCTTGT GCCTGCCATC GTAACATTTG GTGATTCTGC TGTGGATGTA GGAAATAATG ACTATCTTCC CACAATTTAT
AAGGCTAATT ACCCTCCCTA TGGGAGAGAC TTTGCTAACC ACCAACCAAC TGGGAGGTTC TGCAATGGCA AATTAGCTAC
TGATATCACT GCTGAGACGT TGGGTTTTAA GACCTATGCT CCTGCATATC TTAGCCCACA GGCGTCAGGG AAAAACCTCC
TTATTGGAGC AAACTTTGCT TCTGCTGCAT CTGGTTATGA TGAAAATGCT GCTATTTTGA ATCATGCAAT TCCATTGTCC
CAACAGTTAA GTTATTTCAA GGAATACCAA GGCAAGCTGG CCAAGGTAGC TGGCAGTCAA AAGGCAGCCT CAATTATCAA
AGATGCATTG TACGTGCTCA GTGCTGGCAG CAGCGACTTT GTGCAAAACT ATTACGTCAA TCCTTGGATC AACAAAGTAT
ACACACCTGA CCAGTATGGC TCCTTCTTAG TTGGTTCGTT CACCAGTTTT GTTAAGGACT TGTATAAATT GGGAGGCAGG
AGACTTGGAG TGACTTCACT CCCACCATTG GGTTGCCTAC CTGCTGCAAG GACTTTATTT GGTTTCCATG AGAATGGTTG
TGTCTCAAGA ATCAACTCTG ATGCCCAAGC ATTTAACAAG AAGATCAACT CAGCTGTAGC AAATCTTCAA AAGCAACTTC
CGGGTCTCAA GATTGCTGTT TTTGACATTT ACAAGCCTCT CTATGACCTT GTTCAATCCC CTTCAAAATT TGGTTTTGTG
GAGGCAAACA GAGGTTGCTG TGGTACCGGG ACTGTGGAGA CAACATCTTT GTTGTGTAAT CAAAAATCAC CTGGAACTTG
TTCTAATGCC ACCCAGTATG TGTTTTGGGA TAGTGTCCAT CCTTCACAAG CAGCTAACCA AGTTCTAGCT GATTCATTAA
TTATCCAAGG CATAAGTCTT ATCACATAAA GAGTCGTGAT TATTTGTGTG GAGATAGTAT TGTGTACTAC TACACAGCGT
GAAAGTGATT CAATGTTTGC TGTTTTTCCT TTGTATGGAC AAAGAATTGC TCTATGTATT TCAGATCATG AGAA

>Vigan.09G211000.01
ATGTCATTTT CAGTTGTCAT ATATAAGTTC TCCATTTTCT GCTGCACTCA GTGCATCCAA AACCAGAATA GCATCATGAT
GAACATTGCA CTTCTTGTTC AACTCTTTGC ATTTTCCTTC CTTAGTTGTG TGTATGCACA AGACACCACC ACCCTTGTGC
CTGCCATCGT AACATTTGGT GATTCTGCTG TGGATGTAGG AAATAATGAC TATCTTCCCA CAATTTATAA GGCTAATTAC
CCTCCCTATG GGAGAGACTT TGCTAACCAC CAACCAACTG GGAGGTTCTG CAATGGCAAA TTAGCTACTG ATATCACTGC
TGAGACGTTG GGTTTTAAGA CCTATGCTCC TGCATATCTT AGCCCACAGG CGTCAGGGAA AAACCTCCTT ATTGGAGCAA
ACTTTGCTTC TGCTGCATCT GGTTATGATG AAAATGCTGC TATTTTGAAT CATGCAATTC CATTGTCCCA ACAGTTAAGT
TATTTCAAGG AATACCAAGG CAAGCTGGCC AAGGTAGCTG GCAGTCAAAA GGCAGCCTCA ATTATCAAAG ATGCATTGTA
CGTGCTCAGT GCTGGCAGCA GCGACTTTGT GCAAAACTAT TACGTCAATC CTTGGATCAA CAAAGTATAC ACACCTGACC
AGTATGGCTC CTTCTTAGTT GGTTCGTTCA CCAGTTTTGT TAAGGACTTG TATAAATTGG GAGGCAGGAG ACTTGGAGTG
ACTTCACTCC CACCATTGGG TTGCCTACCT GCTGCAAGGA CTTTATTTGG TTTCCATGAG AATGGTTGTG TCTCAAGAAT
CAACTCTGAT GCCCAAGCAT TTAACAAGAA GATCAACTCA GCTGTAGCAA ATCTTCAAAA GCAACTTCCG GGTCTCAAGA
TTGCTGTTTT TGACATTTAC AAGCCTCTCT ATGACCTTGT TCAATCCCCT TCAAAATTTG GTTTTGTGGA GGCAAACAGA
GGTTGCTGTG GTACCGGGAC TGTGGAGACA ACATCTTTGT TGTGTAATCA AAAATCACCT GGAACTTGTT CTAATGCCAC
CCAGTATGTG TTTTGGGATA GTGTCCATCC TTCACAAGCA GCTAACCAAG TTCTAGCTGA TTCATTAATT ATCCAAGGCA
TAAGTCTTAT CACATAA

>Vigan.09G211000.01
MSFSVVIYKF SIFCCTQCIQ NQNSIMMNIA LLVQLFAFSF LSCVYAQDTT TLVPAIVTFG DSAVDVGNND YLPTIYKANY
PPYGRDFANH QPTGRFCNGK LATDITAETL GFKTYAPAYL SPQASGKNLL IGANFASAAS GYDENAAILN HAIPLSQQLS
YFKEYQGKLA KVAGSQKAAS IIKDALYVLS AGSSDFVQNY YVNPWINKVY TPDQYGSFLV GSFTSFVKDL YKLGGRRLGV
TSLPPLGCLP AARTLFGFHE NGCVSRINSD AQAFNKKINS AVANLQKQLP GLKIAVFDIY KPLYDLVQSP SKFGFVEANR
GCCGTGTVET TSLLCNQKSP GTCSNATQYV FWDSVHPSQA ANQVLADSLI IQGISLIT*