GBrowse Details

Vigan.09G209700.01

Basic Information:
Name: Vigan.09G209700.01
Multiple alignment
Variant Information
Position: Chr09:35470635..35473241 (- strand)
Length: 2607
Functional Information:
Description: Similar to Uncharacterized protein. [V7BZL0, Phaseolus vulgaris]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L28e (IPR002672)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:100.61,109.04,155.04,77.77,202.30,455.03,256.82,108.14
Automatic updates:
Name: NM_001251082 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499921 (LOC100499921), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251471 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306153 (LOC100306153), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:35470635..35471180 (- strand)
Length: 546
Type: three_prime_UTR
Position: Chr09:35471181..35471321 (- strand)
Length: 141
Type: CDS
Position: Chr09:35472506..35472669 (- strand)
Length: 164
Type: CDS
Position: Chr09:35472943..35473090 (- strand)
Length: 148
Type: CDS
Position: Chr09:35473091..35473241 (- strand)
Length: 151
Type: five_prime_UTR

>Vigan.09G209700.01 class=Sequence position=Chr09:35470635..35473241 (- strand)
CAACACTTCA CGGATCTTGA TTACGGATTA ATGGGTCGAA CTTCCGAACC CGGTTACTTC ATTTTGATAA ACTTAGGGTT
TCTTCCCTGT CCTATATAAA TATAGAGCCT AACGCAAAAC CCTAGTTGTG AGTTGCAGGA AGAAGGAGCA AATGGCGACT
GTTCCAGGGC AACTTGTGTG GGAGATCGTG AAGAAGAACA ACTCTTTCTT AGTGAAACAG TTCGGAAGAG GGACTCAGAG
CGTCGAATTC AGCAGAGAGT CCAACAATCT CTACAACCTC AATTCGTTCA AATTCTCTGG TATGTTGCTC TCTCTGATTT
TTAATTTTAT TTTTTGAAAA AAAAATGAAT CATTTTGATC TTTGAAATTG GGTACGCGAA AAGCCAATTC TTTTCGTGTT
TAATATTTGG GTAGGTAGGT AGAGTTTGGG CATATATTGA AATTCTGAAA CTTCTAAAAT GTTGTTTTGG TCTTTGGTCA
CAGAGTTTGC GTCGTCTAAG AAATGTTTTA TGGATTGGAT TACACTGTTT CAATTGTTTG AAGTTGAATT TGTTCTTTCA
CTGGCATGTT AGGTTTGGCA AACAAGAAAA CTGTTACCGT TCAGCCTGCT GGTAAGGATC TATCTGTTTT GTTGGCTACA
ACAAAGACAA AGAAGCAGAA CAAGCCTGCT TCATTGCTCC ACAAATCTGT GATGAAGAAG GAGTTCCGTA GGATGGCAAA
GGCTGTTGAA AATCAGGTAA ATGAAAAAAG AATGTTTTTT ATGTTTATGT TTTTTGTATC ATCTTCTCGT TCTAATTCCT
TATCGTTTGA TTCCTTTGCT ATTTCCAATA GCTATTCCGT TCTTTAACGT CCTTGTTGTA GACGTTTACC CCATTATGTC
AGTGACTGAA CACTTCTAAG ATCTCAACAT TGCTGTCGTT TTCATAAATG AAAACAAGAT TTATGTTATT GATCCCCATT
GCTTTGTTGG AGTTAGTGCT TATGCGTTTT CAATTTGGTG ATTATTGTGC TTTGGTTTGG GCGTATTGTG CGCTAAACAA
ATTTCTTTTG GGGCTTTTGC CTCGAAGACT CAGTGGTGGT GATGAGCCTC TAACATATAA GAAGAGTCCT TTTTTAGGGT
TTCTTCAATG CAATATGCAT GTTACGCTTG GCTTCTGAGC TTCGATCATT CAGGAATTCA TTCATGAATT TATTCTTACA
TCAAATATAT TTTTCTTTGT TTGTTCTTAA TTTCCTTATA TTAGTACATG TTTTTCCTAT TATCCAGTCA TTGCATAGTC
ACGAGGTGAC AACTGTGGTG TCATTTTCAC AAATGCGAAG AAAAGTTTTG TAATCGTTCT TTGATTTGTA GAAGTTACCT
AAGCGTATGT ATTTTGGATT TGGTGATTGT TGTGTATTGG TTGGGCAATG TATCTTTCTG GACTTTTGCC AGCAACACTC
AGCAGCGGTG ATGAGCCTCT AACATATAAG AAGAATCCTT ATTTTTGGGA TTCTTTTATG AAATATACAT GTTACGCTTG
GCTTCTGAGC TTTTTATCAT GAAGGAATTC ATTAATGAAT TTATTCCGAA GTTTAGGTTA CAGAGGAAAT CTTTACCCTC
TTTGTTTTAC TGGTTGTTCA TTCTCTAGTT AGCATCTAAA ATTTCTTCAA TATATGTATC GCCTTAGTGT CAATTTGCTT
GCTCCAATGA GTCAGCCTAT TTGAGTTTTT TTGCATTGAG TACTGCTTTT ACTTTTAATT TTTAATCGAC TTACTCTTGC
ACAGCTCTAT TTAGTTTTAA TGTTATCCAA TTTCGCGCAC TTTCTTTCTT AATGGTTGCT CGTATTTTGT GAATTGTTGC
TGCCAATGCT TTTTGTGCTA TTACCTTGTA CATTACATTT ATCGGATTTC ATTTTCCTAA AACAATACAA CAAATTTCAG
GTTGCGGATA ATTACTACAG GCCTGATCTT AAGAAGGCCG CCCTTGCAAG GTTGAGTGCT GTTAACAGAA GCCTCAAAGT
TGCCAAGTCT GGTGTCAAGA AGAGGAACAG ACAGGCCGTG AAGATCTCTG GTAGGAAGTG AAAGGGAATT GAGACCGAGT
TAACTTGCAT TCAACCCTCG TTTTTGCCCT CTTTTTGTGA TTTTAGAACT CCTGTCTAAA TTTCCTGAGT TGTTTTTGAA
TATGCAATTA TTTATGAAGT ACTCAATGTG AACTCGAACC AGTATTTCAT AGCTTTCACC TTTAATTGTT TCTTGGTATA
ATCGTCTTAT GGTTGTTTCT TGAAGGTCAG CTGACAAAGT GGCTGGTTTT TATTGCTTGT TATTAGCATT AAAATCCATA
TTTAGAAAGA TAATTTTACT TTTGCTTCAT TCTTCACTCT GATAATGAAC GCAATTTGTT TTAGAATTTT AAACCGGAAT
TGGCGCGAAG TCTGGGGTTA GTGAAACATG ATAAACACGA TTTGGCAAAT GGTTGTTTTT TGCGATGTAA ATATTGATTT
GTTAATCACA TTAAAAAACG GGGATCTTTT TGGTGTGATT GATTTACAAA CTGTAATATA GGGATCTCAG TTGCTAAGCA
AAGTGGTTTT GCCATTCCGG TATGATTTTT CGTTGAAGGA AAAGATG

>Vigan.09G209700.01
CAACACTTCA CGGATCTTGA TTACGGATTA ATGGGTCGAA CTTCCGAACC CGGTTACTTC ATTTTGATAA ACTTAGGGTT
TCTTCCCTGT CCTATATAAA TATAGAGCCT AACGCAAAAC CCTAGTTGTG AGTTGCAGGA AGAAGGAGCA AATGGCGACT
GTTCCAGGGC AACTTGTGTG GGAGATCGTG AAGAAGAACA ACTCTTTCTT AGTGAAACAG TTCGGAAGAG GGACTCAGAG
CGTCGAATTC AGCAGAGAGT CCAACAATCT CTACAACCTC AATTCGTTCA AATTCTCTGG TTTGGCAAAC AAGAAAACTG
TTACCGTTCA GCCTGCTGGT AAGGATCTAT CTGTTTTGTT GGCTACAACA AAGACAAAGA AGCAGAACAA GCCTGCTTCA
TTGCTCCACA AATCTGTGAT GAAGAAGGAG TTCCGTAGGA TGGCAAAGGC TGTTGAAAAT CAGGTTGCGG ATAATTACTA
CAGGCCTGAT CTTAAGAAGG CCGCCCTTGC AAGGTTGAGT GCTGTTAACA GAAGCCTCAA AGTTGCCAAG TCTGGTGTCA
AGAAGAGGAA CAGACAGGCC GTGAAGATCT CTGGTAGGAA GTGAAAGGGA ATTGAGACCG AGTTAACTTG CATTCAACCC
TCGTTTTTGC CCTCTTTTTG TGATTTTAGA ACTCCTGTCT AAATTTCCTG AGTTGTTTTT GAATATGCAA TTATTTATGA
AGTACTCAAT GTGAACTCGA ACCAGTATTT CATAGCTTTC ACCTTTAATT GTTTCTTGGT ATAATCGTCT TATGGTTGTT
TCTTGAAGGT CAGCTGACAA AGTGGCTGGT TTTTATTGCT TGTTATTAGC ATTAAAATCC ATATTTAGAA AGATAATTTT
ACTTTTGCTT CATTCTTCAC TCTGATAATG AACGCAATTT GTTTTAGAAT TTTAAACCGG AATTGGCGCG AAGTCTGGGG
TTAGTGAAAC ATGATAAACA CGATTTGGCA AATGGTTGTT TTTTGCGATG TAAATATTGA TTTGTTAATC ACATTAAAAA
ACGGGGATCT TTTTGGTGTG ATTGATTTAC AAACTGTAAT ATAGGGATCT CAGTTGCTAA GCAAAGTGGT TTTGCCATTC
CGGTATGATT TTTCGTTGAA GGAAAAGATG 

>Vigan.09G209700.01
ATGGCGACTG TTCCAGGGCA ACTTGTGTGG GAGATCGTGA AGAAGAACAA CTCTTTCTTA GTGAAACAGT TCGGAAGAGG
GACTCAGAGC GTCGAATTCA GCAGAGAGTC CAACAATCTC TACAACCTCA ATTCGTTCAA ATTCTCTGGT TTGGCAAACA
AGAAAACTGT TACCGTTCAG CCTGCTGGTA AGGATCTATC TGTTTTGTTG GCTACAACAA AGACAAAGAA GCAGAACAAG
CCTGCTTCAT TGCTCCACAA ATCTGTGATG AAGAAGGAGT TCCGTAGGAT GGCAAAGGCT GTTGAAAATC AGGTTGCGGA
TAATTACTAC AGGCCTGATC TTAAGAAGGC CGCCCTTGCA AGGTTGAGTG CTGTTAACAG AAGCCTCAAA GTTGCCAAGT
CTGGTGTCAA GAAGAGGAAC AGACAGGCCG TGAAGATCTC TGGTAGGAAG TGA

>Vigan.09G209700.01
MATVPGQLVW EIVKKNNSFL VKQFGRGTQS VEFSRESNNL YNLNSFKFSG LANKKTVTVQ PAGKDLSVLL ATTKTKKQNK
PASLLHKSVM KKEFRRMAKA VENQVADNYY RPDLKKAALA RLSAVNRSLK VAKSGVKKRN RQAVKISGRK *