GBrowse Details

Vigan.09G203300.01

Basic Information:
Name: Vigan.09G203300.01
Multiple alignment
Variant Information
Position: Chr09:34922208..34925034 (- strand)
Length: 2827
Functional Information:
Description: Similar to Ribosomal protein L34. [V7AQD1, Phaseolus vulgaris]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L34 (IPR000271)
Ribosomal protein L34, conserved site (IPR020939)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:18.20,23.80,21.83,13.21,29.79,41.89,15.30,12.39
Arabidopsis thaliana homolog: AT3G13882.2
Automatic updates:
Name: NM_001248067 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305667 (LOC100305667), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:34922208..34922608 (- strand)
Length: 401
Type: three_prime_UTR
Position: Chr09:34922609..34922681 (- strand)
Length: 73
Type: CDS
Position: Chr09:34924169..34924268 (- strand)
Length: 100
Type: CDS
Position: Chr09:34924681..34924906 (- strand)
Length: 226
Type: CDS
Position: Chr09:34924907..34925034 (- strand)
Length: 128
Type: five_prime_UTR

>Vigan.09G203300.01 class=Sequence position=Chr09:34922208..34925034 (- strand)
AAAAAACCCA AATTGAAAAG AGGCAAAACT CCGATCCATG GAGATGGAGG TTGGTGTTTG GTGTTGGCGC ATTGCTTAGG
TTGGGTTAGG TTAGGGTTTA TGAAGCAAAG CTTTGAGTGA AACCAACAAT GGCGTCGAAT AGCGTTCTCA GAAGTGGGGC
TTCCTTGTTG AATCGCCTTT CCAAATCGCT TCCTCTTCAT TCCAATACCC CTCAACTTCA ATCTCATTTC CTCTTCCCCT
CTCTCTCTAG GCTCCCCTCT GCCATTTCTC CCCAAAACGA CGTCGAATTT CCCCACAAAC AAGGCTTTCT CTACCCCTGT
GGCCTCCCCT CTCTCCGCTT CTTCTTACCT CACGGTACAC TTACTCTCAC TACACTCTTC ATTGCATTTC ATTTTCAATG
GAATTTTGTT ACTTTCCACC TATTTTCTTG CAATTGATCG CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
CTCTCTCTCT CTCTCTCTCT CTCTCTCTAT CTCTGTGTAT CTGTGTGTCT AATGTTAATG TGATTAATTA CACTAATGTG
AGATGTGACA TTGAAGAAAA GATAATGCCT CTGGAAGGCA AAAATTAATT TTTAAGTGCA CTGTGTTGTG ATATATGTTA
CGATTTTTCA ATCACAAAAT ATAATCACGT ACCAGCTATT GCATGAGAAG ATGGTGTTTT ATGAAATTTT AAGCATTTGA
ACTCCACCCA GGTACTTTTT ATTCTGAATT TATGATTATT CTGCAGGGGA TGCTCCTTCA TCAGATGAGC CCATGCTTTT
GTTCCCCAAA AGGACATTTC AACCTAGTCT CATTAAACGA AAGAGGAACC ATGGATTTTT TGCTCGGTAA ATCACTCATC
TTTTTGGTTA TATGTTCCTT CGTAATGAGA AGAGAAAGTA GAAAATGTTA CTTGTTAGTG GTTAACCCTT CCTTTTCTTC
TACATGATGT CAAACTTGGT CAATTTTAGA ACTCTTGTGG TGTTTCCGTT CTTCAGCTTA CTCAACTAGA TAATAACTAT
GCTTACTCAA CTAGATAATA ACTATGCAAA GGCCTGCGAT CGATTGTTCT TACGCATTAT ACTTTCTATT ACTTTCACTT
GGTCTGTTGG CTTGTTGGGG GTAATAGATA ACATGGACAT GACAAAAAAG ATTCATAAAG CGTGACCCTA TGCCTGAATT
TTGAACAGAT TGTTTTGTTG AATGTGGCAA TATGCAATTG ATTAATGAAG CATTCAATGA ACAGATTGCC AGTCTCTCTA
GATTGTGGTT GCTTTGTTTT TGGTATATAA ATGGGTGTCA CATTTTAGAC TATGGCCAGG CAAAGTGGCA TGTGAAATGC
TTCCTTGATG GCCCAAAGAC CATTGCTTCC TTTTCTTGTA TATAGGAGAG AATTGGGTTA CTGAAGGAAT AACTTAGCGC
TATTCCATTC AGTAATTCTT TCTATATATT AAATTTCACT AATTCAGCAG TTGATTAAAT GTTTTAAATA GATTAAGTCT
GTTGATTTTT ATAAAAATTT AAAACTATTA ATACTTTTGA ATAAATTCAA TTTAACAGAT ATTAGTTTAC TTTTTAAAAA
TATAAATAAA TGTTGACATT TTGATTACTT AGCAACAAAT GTTTGGTTTA TCTAAAATTT AGTGTCTATG ATCGTTGAAA
TGATATGAAT CCCATGATGA CATTAGGCTA TGTTAAAGGC AATATTTAAT AAGTTGAATA TTGAATTTTA ATATTTAATA
TATAGAAAAT TTCATTGAAT GGAAAGAGTA ACTTTACCTA AAGTTACTTT TGGAGTAACT TGATTCTATT AGAAGAGATG
TCGAATTGTT GCAACTGACG TCAACTGTCT CACCATGCAT TAACCTCTAA TTGAATAATT TTATATAAAA ACTCACCGTC
AAATTAGAGT TTCTTTCACA TTGATCATAT CTAAGTACGA GTTATATTAT TCTAAAATCA TTTCATACCT TATTTACATA
CATTAAAATT GATGTAATGT CTACTTTCTG AATGTACAAA AATGGAATAA TTTGATAATT TTCTTGTTTT GGTCCATTTT
TCACAAAATT CTCAGAAATA ATAAAAAGGA ATATATGATT ATAATTCAGC CTTAGTTTAT ATGAAGTTAC TAAAATATAT
AGTTTGTTTA AGATATACCC CATATAGTTT TATCTCTATC CATATATTTG TCACGAGCCT CTTTCAGATC CAGTCTGGCT
AAATGAATAG AACTGAGGAA ATTTATGTCT GGCTTATATG CAAACTTGAG TCTGTAATAT CTGAAACAGA GGTATGCCGT
GTAGATGACA TATTTTTTGT ATTACATGAG CAGGAAAGCG ACTAAGGGTG GCAGAAAAGT AATTGCTCGA AGAATAGCCA
AGGGCCGGTT TAGGATTACA GCTTAGTATC ATTGCATTGA CATTGGAGTT AAACTTTGAA TTTAGAAACT TAGTGCACTT
CATGGTAAGG CCCCCTCAGG GTGAACCTGA CATTGCTACC TAAAAGAGCT CATTTTTTTT GGTTGGGGTG TGGGGTTGGA
GTTTTATTAA GTATAGTATG CGATGAATAA CTTTTCAGGC AACTGTTGTG CATGGATGTG TTAACATTCT GTTTATTTCT
ATTTGAAATT TTGGTCAGTA GTTGCAATAA TTTGTAACTC TAGTATTTAC AAATAATCTA GCTTTATTTG GTGCAAAGAA
AACGAGTTTG TTTTTGAGTT GACTAGTTTG AGTTTGACAG CCTTAGAAAG TCAACTAGAA ACATAAACGA GTTTGACAGC
CTCATGTGTT TGTTTTCTGT TTCCAAA

>Vigan.09G203300.01
AAAAAACCCA AATTGAAAAG AGGCAAAACT CCGATCCATG GAGATGGAGG TTGGTGTTTG GTGTTGGCGC ATTGCTTAGG
TTGGGTTAGG TTAGGGTTTA TGAAGCAAAG CTTTGAGTGA AACCAACAAT GGCGTCGAAT AGCGTTCTCA GAAGTGGGGC
TTCCTTGTTG AATCGCCTTT CCAAATCGCT TCCTCTTCAT TCCAATACCC CTCAACTTCA ATCTCATTTC CTCTTCCCCT
CTCTCTCTAG GCTCCCCTCT GCCATTTCTC CCCAAAACGA CGTCGAATTT CCCCACAAAC AAGGCTTTCT CTACCCCTGT
GGCCTCCCCT CTCTCCGCTT CTTCTTACCT CACGGGGATG CTCCTTCATC AGATGAGCCC ATGCTTTTGT TCCCCAAAAG
GACATTTCAA CCTAGTCTCA TTAAACGAAA GAGGAACCAT GGATTTTTTG CTCGGAAAGC GACTAAGGGT GGCAGAAAAG
TAATTGCTCG AAGAATAGCC AAGGGCCGGT TTAGGATTAC AGCTTAGTAT CATTGCATTG ACATTGGAGT TAAACTTTGA
ATTTAGAAAC TTAGTGCACT TCATGGTAAG GCCCCCTCAG GGTGAACCTG ACATTGCTAC CTAAAAGAGC TCATTTTTTT
TGGTTGGGGT GTGGGGTTGG AGTTTTATTA AGTATAGTAT GCGATGAATA ACTTTTCAGG CAACTGTTGT GCATGGATGT
GTTAACATTC TGTTTATTTC TATTTGAAAT TTTGGTCAGT AGTTGCAATA ATTTGTAACT CTAGTATTTA CAAATAATCT
AGCTTTATTT GGTGCAAAGA AAACGAGTTT GTTTTTGAGT TGACTAGTTT GAGTTTGACA GCCTTAGAAA GTCAACTAGA
AACATAAACG AGTTTGACAG CCTCATGTGT TTGTTTTCTG TTTCCAAA

>Vigan.09G203300.01
ATGGCGTCGA ATAGCGTTCT CAGAAGTGGG GCTTCCTTGT TGAATCGCCT TTCCAAATCG CTTCCTCTTC ATTCCAATAC
CCCTCAACTT CAATCTCATT TCCTCTTCCC CTCTCTCTCT AGGCTCCCCT CTGCCATTTC TCCCCAAAAC GACGTCGAAT
TTCCCCACAA ACAAGGCTTT CTCTACCCCT GTGGCCTCCC CTCTCTCCGC TTCTTCTTAC CTCACGGGGA TGCTCCTTCA
TCAGATGAGC CCATGCTTTT GTTCCCCAAA AGGACATTTC AACCTAGTCT CATTAAACGA AAGAGGAACC ATGGATTTTT
TGCTCGGAAA GCGACTAAGG GTGGCAGAAA AGTAATTGCT CGAAGAATAG CCAAGGGCCG GTTTAGGATT ACAGCTTAG

>Vigan.09G203300.01
MASNSVLRSG ASLLNRLSKS LPLHSNTPQL QSHFLFPSLS RLPSAISPQN DVEFPHKQGF LYPCGLPSLR FFLPHGDAPS
SDEPMLLFPK RTFQPSLIKR KRNHGFFARK ATKGGRKVIA RRIAKGRFRI TA*