GBrowse Details

Vigan.09G181900.01

Basic Information:
Name: Vigan.09G181900.01
Multiple alignment
Variant Information
Position: Chr09:32644004..32647635 (+ strand)
Length: 3632
Functional Information:
Description: Similar to Uncharacterized protein. [I1MKB4, Glycine max]
InterPro: Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain (IPR025564)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.15,0.16,52.63,457.64,0.17,35.63,4.25,69.13
Arabidopsis thaliana homolog: AT2G46820.1
Structure :
Position: Chr09:32644004..32644214 (+ strand)
Length: 211
Type: five_prime_UTR
Position: Chr09:32644215..32644371 (+ strand)
Length: 157
Type: CDS
Position: Chr09:32644632..32644735 (+ strand)
Length: 104
Type: CDS
Position: Chr09:32644826..32644912 (+ strand)
Length: 87
Type: CDS
Position: Chr09:32645040..32645102 (+ strand)
Length: 63
Type: CDS
Position: Chr09:32647043..32647080 (+ strand)
Length: 38
Type: CDS
Position: Chr09:32647169..32647226 (+ strand)
Length: 58
Type: CDS
Position: Chr09:32647227..32647635 (+ strand)
Length: 409
Type: three_prime_UTR

>Vigan.09G181900.01 class=Sequence position=Chr09:32644004..32647635 (+ strand)
GAAACGAGTG GTTGTGCTGC AACTCCAACA CTGATTTTGC AAATTATCAA ACGCCAGTGA AATTAAGACA GAAAAAAAAA
TTAGAAACAG AAGAAACATA TCAATAACTT AAAGCCAGTT TCTGACACCA AAGAAAAAGG AAAGGAACTT GATCCATATT
CTGTCGTGGA CTTGAGAGTC TTTCATAGGA CAGTAAATTC CAAACACACC AATGGCTTCA ACCTCTTCTG CTCTCACTGT
ATCCTCTTCT TCCACACTTT TTGATGGCAA GGCTCCAAGG CACTCACCAC CTCTTTCTCC ACAATGTGTC AGCCTTCCCC
TTCCCCATTT CCACTCTCAA AACCGTTCAT GGAAGACCAC TGCTTATAGT AAGTTATAAT CACTCTACAC TGCACACTTG
TGAATAGTAT GTTAGAGATC CCACATTTTG GTTTGTAATT TAGCAACAGT AGTTGGTATA AGTTGGAGAT ATGCCTCATT
TTATGATATA GTTTTTGAAG TTAAGTAGGA ATTCAAATTC TAAGATGGTG TCAGAAATTA ACTATTGAAG GTTTATTCAA
GGTAGATAAC TTTTAAGGTT AAGTTCAGGA TGGTACCAGA ACTTGTTTTA GTGATGATTG CTTTTCAGAT GGCAAGATTG
CTCGTAATGT TATTGCAATG GCCACAGGAG AGGCACCGGC CGAAGCTTCC TCGACTGAGG TGCCAGAGAT TGTCAAGACT
CTTCAAGAAA CTGTAAGAGT CTTTAGTTTG TTTAGTGTGT ATTTTGAGCT GGAGTTTTTT CTGTGTTTCT GATTTGAATT
ACTTGATGTT TGTTGCATAT AGTGGGACAA AGTTGATGAT AAGTATGCAG TGAGTTCACT GGCCCTGGTT GGTGTGATTG
CATTATGGGG CTCAATTGGA TTGATCTCAG TAGGTTATCT AAAAGTTTGT TTTGGATTCT TTGATTGATT ATCATTGCCT
GGTATTTACA AATGGAAATT CTTTATGATC ATGTGTTTGA GACTGTCCTA AGCAGTAACT GTATCACTTG TAACAGGCAA
TTGATAGGCT TCCCTTGATT CCTGGGATTC TTGAGATTGT AGGCATTGGC TACACTGGGG TATGTGATAT ATACTTAGAT
TTCTGGTTTG GTTTGGTTAC ACTGTTATAA TGCTTATGAG AATGAACTTA TGGAAGAAAA AAGAACACAG ATAAATTTAT
GTAACTTAAG TTAATCCTAA CTCAGTGTCG TTTCTTGCTA CGTAATCCTT TCTAATGCCT TGGTTTCCAC TATCTCCTTG
TAAATGGTTC AACAAATACA GTATAGCAAA AACCAGAGGG GGTTTTAACA ATTGCACATA CATATTGATG GGATTTTTTT
TTGAGAGTTT ATTAGGTTTA AACTAATATA AGATATTGAC ATTATTTTAA CCAAAATCCT TAAGACATTA ATGAGATTTT
TAAATGATTC AACAAATACA ATGTAATGTT GGAAGTCTTA GACTAAAAAT AGTACTAATT TAGAGTATAT ATGTGAGTAC
AAACCTCACC TTTGATAGTA AACTCCTAGT TAGATTTGGC CAAAACTAGA AGGAAAGCCA TAGAGGTGGT CATGGATGAG
TGATTTGTGG AACAATGGTG GAAGGTGAGC TAAGTGTCTC CCAATTTTGA TGGTGTTATG GATGACGGAG GTGGTGTTTG
TGATGCTCTA AGAGAGGTTG TGTCAATTCT TGGAGGAAGG TGGCTAGAGA AGGCCACTTG GGTTTATCTA GCCCAGGGTG
ACCTAATAAG AGTAGTATGA CTCAAAATTG ACAACATAAC AATACTCTAA ATCAAAGATA TTTACAAGAG TGGAAGACAC
CTTTATTTAT AGGCTAAGTG TGTCTCCAAA ATTGTAGAAG CTAAATCTAA ACAATCCACC TTGGCTAGCT TGAAGAGCAA
GAAGAAAATC CTTTCCATTA GGAGGAAGAA AAGTGGCGAA AAATTCTCTC CAATGAGAGA GTGACATATG ACCACTACCT
ATAGAAAATT TTCTTCATTC CTAGAGTGAC ATGTGACCAC TAACTAGAAA AACACACCAA AGGGAGAAGG ACACATGGCA
TGACCGTCCA CCCCTCCTTG CCCACCAAGT TAGCTAAAAA TGTTGACCTC TTAGTCAACA CATGGTTTTG GATGTCCCAC
CTTGGTCAAC ATTGAGCCTT GACCCTTTGT TAACTTGAGT GGTCAAAAGC CTATTCTACT TGGCCCAAAA TATAGGGTCC
AAAATAAATT TTACACTTCT AGATCCATAA TACAAAGCCT AAAAAAATCT TGGACTACTT GGCCAAAAAT ACAATATCCA
AAATTATTCT TACTCTACTA GAAGTTTCAT GATGGTCCAA GATGACCCGA GATAGAGTCT AGGCCCATCT TCCATAGATG
ACTCCAACGC TTTTTGAATG TGTTTGGACA TATTGTTACA TGGCTAAGGG ATATGCCATC AACCTTACAA GCCGGTTTTG
TGAGGTTGAG TTAGGTTTAA AGTCTACTTC TTAACATTGG TATTAGAACT ATTGTTAGAG TTTGTCCTAG TGAGATTTGT
TATTTGTTAG ACATATTGTT CCACGCGCTA TCAGACTGCT CTCAGACCAC CCATCAATCT CTAGAGTATA TAAATAAGTA
TAAACTTCAT TTTGAAATCA GTTTTTTAAG ATTGAGTATT TTTTAAGATT GAGTTATACT TAAAATCCAC TTCTTAACAT
GTAACATAAT AAAAAACTTT AACAATTACA CACACATTGA TAGGATTTTT AAGACATTTT AGGAGGGATT GACTTGGGTT
AAATTATGTA TGCATGACTT CACTCCATGC ATATAAGGTG TCGACACTAG TTTAAACTAA AATCTTTAAG GTATTAAATG
TATAAGTCTT TCTTTTTATA TATAGTATTT AATTTTATGA TTTTTATTTA ACTTAAACTC ATACTTATTC TCAATCACAT
ATTTAAGCTT GTAAATTGTA GTAGAAGATT CCATTTTCAT GAAAATCTGT TATTCATTTT CTCTGTTTTT CTTTTGCAGT
GGTTCGTATA TAAGAACATA GTTTTCAAGC CAGACAGGTG AGCATAATTA TTCTTGAATA ATTTCCTACA ATTTGGTGCA
GTGAATCATG GATAGAAGTT TTAAACCTGT TTAATGGAAT TCCAGGGAAA ATTTGGTACA GAAAGTAAAA GAAACATACA
ATGAAATACT CGGGAGCAAC TGAAAGAGGT AGCAAAATGC TGAGATGATG TAGGCATGAA AGGATCATAT CTTTAAGCTT
CCTGTTGAAG ATTTCATCAT GCTTCATTTT ATGGCCATAA GCTTCTGACC ATACTTTATC CCAAGCACTG TGTGTACGAA
AAAGATTGTA TCATTTTATA TATCTTAATC CACTTTTAAG ACAGCTTCAT TTCCTCAATT ATCTGTAGTG GTTGGTTACA
AGGATAAGAA AAAGCAATTG AGTTCATCAA GCTGAATTCA ATGACTTTGA AAGAATTTTT TATGAGCCTA TTTGTTATCT
ATCTGCATGC AACTTGCTTG CATACTACCT ATTTGATTTT ATTACGGTTC ATAATTTCAT ATTGTTAGCT GTGTTGGTAT
TCTCAATTAG CTTAACATCG ACCTTCCGCT GT

>Vigan.09G181900.01
GAAACGAGTG GTTGTGCTGC AACTCCAACA CTGATTTTGC AAATTATCAA ACGCCAGTGA AATTAAGACA GAAAAAAAAA
TTAGAAACAG AAGAAACATA TCAATAACTT AAAGCCAGTT TCTGACACCA AAGAAAAAGG AAAGGAACTT GATCCATATT
CTGTCGTGGA CTTGAGAGTC TTTCATAGGA CAGTAAATTC CAAACACACC AATGGCTTCA ACCTCTTCTG CTCTCACTGT
ATCCTCTTCT TCCACACTTT TTGATGGCAA GGCTCCAAGG CACTCACCAC CTCTTTCTCC ACAATGTGTC AGCCTTCCCC
TTCCCCATTT CCACTCTCAA AACCGTTCAT GGAAGACCAC TGCTTATAAT GGCAAGATTG CTCGTAATGT TATTGCAATG
GCCACAGGAG AGGCACCGGC CGAAGCTTCC TCGACTGAGG TGCCAGAGAT TGTCAAGACT CTTCAAGAAA CTTGGGACAA
AGTTGATGAT AAGTATGCAG TGAGTTCACT GGCCCTGGTT GGTGTGATTG CATTATGGGG CTCAATTGGA TTGATCTCAG
CAATTGATAG GCTTCCCTTG ATTCCTGGGA TTCTTGAGAT TGTAGGCATT GGCTACACTG GGTGGTTCGT ATATAAGAAC
ATAGTTTTCA AGCCAGACAG GGAAAATTTG GTACAGAAAG TAAAAGAAAC ATACAATGAA ATACTCGGGA GCAACTGAAA
GAGGTAGCAA AATGCTGAGA TGATGTAGGC ATGAAAGGAT CATATCTTTA AGCTTCCTGT TGAAGATTTC ATCATGCTTC
ATTTTATGGC CATAAGCTTC TGACCATACT TTATCCCAAG CACTGTGTGT ACGAAAAAGA TTGTATCATT TTATATATCT
TAATCCACTT TTAAGACAGC TTCATTTCCT CAATTATCTG TAGTGGTTGG TTACAAGGAT AAGAAAAAGC AATTGAGTTC
ATCAAGCTGA ATTCAATGAC TTTGAAAGAA TTTTTTATGA GCCTATTTGT TATCTATCTG CATGCAACTT GCTTGCATAC
TACCTATTTG ATTTTATTAC GGTTCATAAT TTCATATTGT TAGCTGTGTT GGTATTCTCA ATTAGCTTAA CATCGACCTT
CCGCTGT

>Vigan.09G181900.01
ATGGCTTCAA CCTCTTCTGC TCTCACTGTA TCCTCTTCTT CCACACTTTT TGATGGCAAG GCTCCAAGGC ACTCACCACC
TCTTTCTCCA CAATGTGTCA GCCTTCCCCT TCCCCATTTC CACTCTCAAA ACCGTTCATG GAAGACCACT GCTTATAATG
GCAAGATTGC TCGTAATGTT ATTGCAATGG CCACAGGAGA GGCACCGGCC GAAGCTTCCT CGACTGAGGT GCCAGAGATT
GTCAAGACTC TTCAAGAAAC TTGGGACAAA GTTGATGATA AGTATGCAGT GAGTTCACTG GCCCTGGTTG GTGTGATTGC
ATTATGGGGC TCAATTGGAT TGATCTCAGC AATTGATAGG CTTCCCTTGA TTCCTGGGAT TCTTGAGATT GTAGGCATTG
GCTACACTGG GTGGTTCGTA TATAAGAACA TAGTTTTCAA GCCAGACAGG GAAAATTTGG TACAGAAAGT AAAAGAAACA
TACAATGAAA TACTCGGGAG CAACTGA

>Vigan.09G181900.01
MASTSSALTV SSSSTLFDGK APRHSPPLSP QCVSLPLPHF HSQNRSWKTT AYNGKIARNV IAMATGEAPA EASSTEVPEI
VKTLQETWDK VDDKYAVSSL ALVGVIALWG SIGLISAIDR LPLIPGILEI VGIGYTGWFV YKNIVFKPDR ENLVQKVKET
YNEILGSN*