GBrowse Details

Vigan.09G175400.01

Basic Information:
Name: Vigan.09G175400.01
Multiple alignment
Variant Information
Position: Chr09:31839862..31846174 (- strand)
Length: 6313
Functional Information:
Description: Similar to ORM1-like protein 3-like. [XP_004510647.1, Cicer arietinum]
GO: Cellular Component: integral to membrane (GO:0016021)
InterPro: ORMDL (IPR007203)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:354.06,165.53,51.23,63.45,63.84,152.29,72.41,55.91
Arabidopsis thaliana homolog: AT5G42000.1
Automatic updates:
Name: NM_001251583 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527600 (LOC100527600), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001252883 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100813346 (LOC100813346), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:31839862..31840387 (- strand)
Length: 526
Type: three_prime_UTR
Position: Chr09:31840388..31840526 (- strand)
Length: 139
Type: CDS
Position: Chr09:31843731..31843879 (- strand)
Length: 149
Type: CDS
Position: Chr09:31845686..31845871 (- strand)
Length: 186
Type: CDS
Position: Chr09:31845872..31846174 (- strand)
Length: 303
Type: five_prime_UTR

>Vigan.09G175400.01 class=Sequence position=Chr09:31839862..31846174 (- strand)
TTATTTACGA GTAAAAACCA ATTTAAGCTT TCAATTTCAA TTCCTCCACA CACAGAAACA CACGCCATCC ATCATCCCTG
ATATTTTAAT AAAAGAGAGA GAGAGAGAGG GAGAGAGACA AGGAGAAGGA GAAAGAGAGA GAAAGAGAAG AGGGTGTGTT
TCTGGGTTTT GAAATTTTGA GGCCCCATCA ATCAAAGCCC CATCAAATTG TCCAAGCATT TGAAAGGTGG AAACTTTTGC
ATCTGGGATC GTGTAATTGG GGTTTTGCGT CAAAAGGGTA TCTATCAATC TATATTGGGT TTGATGGCAA ATCTGTACGT
GAAGGCGGTG CCACCGGCGG ATCTGAACCG GAACACGGAG TGGTTTACGT ACCCTGGCGT CTGGACCACC TACATCCTCA
TCCTTTTCTT TTCTTGGATC CTCGTTCTCT CCGTCTTCGG TTGCTCCCCT GGCATCGCAT GGACCATCGT TAATCTCGCA
CATTTTGCTG TATATTCCTT TTTCTACTTC TTTTAATCAA TTAATTTAAT TACTGCCTTT TGTTCTGAGA AAATAAAATT
GAGTTCTGGG TCTTTGATTT GTTACCTGAT TTATCCCTGG TATTGATGAC CTTGCAGTTT AAGGCTTTTT AGGGTAAGCG
CAATATGTGA AGCTGAATGC CATCTTACAT GGTTTTTAAT TGTGATTGAC CTGGATAGAA TCGGGGTCTT AATTTATTGT
TTCATTCGTC GTTATTAAGT ATGTGATTAT AATCCATTTG GCACAATACA TGGTTTTATA TTCCGAAACA TTGATTGTGA
GAGATTGGGT GGGGAAGGGA ATTACCTTTA TCATGCACAT GCAAATCAGA GGTGCTTCTG TCATCTGGCA AGATCACAGA
CAATATGTGA GTTACCATGC ATGTACAAAT TCCTAGTTTA TGTTACATCA GTTTTCTCTT GTTAAGGATG GGGGTGGCCC
TAATTCCTAG TTTATGTTAC CACCAATGCG TATGCTCTTG TTCTTATTGT CTCATGGCAT GGAAGTTAGT TACTCTGCAA
TATTCTTGTT CTTGTTCTCC CTTGGTAGGA AGTTAGTTAT TGGGAATTTG AGTACTCAAA GAATGGTCTG TAGACACTAT
ATAAGGTTAT TAAAATTCTA CGTGTTAACC AATATATAAT CTTAGCAAAA AGTTTAGATT ATCCCGATAA TCATTTGGCA
TTGGTCATTG GTTTTTGAGC TTCTTACTAC TCTACTTCAT CTTTTTAACA CAGTTTTTCT CACTATTCAT TAGATATGGT
TTATTGTAAA GCTCAAGAAA ACAATTGGTT ATTATTACAC CATTGTCTTT TCATTCCTAT CTCCATGGCC CCACCCCACC
ATGTTCTAAA CTTTGATAGA TGTATACACA GTCCCAGCTC TTCCTAAATC ATTATTTGCC TCTCTTAGTT GAGAAATACA
TTTATGCAGC TATATAATTT GCTTAAAAAT GCCCTAGGTT TCTGTGCTTC TCATAATCTC CGTCTGCTGA TAAGCATGAT
GATGGTCTGG CTTTGCTCCA AATTACTGGC CATAAAAATT CGTTTGGCGT CTTACTTGTG AACAGTTGGC CTTCTGCATT
CTGGATGATA TTTGGAGATA CATTTTTATT TTTTAGAAAT TAGAATGGCA ACTGTTTCTG AAATTGTTAA AAGAAGTTGA
ATGGGGTTCT GGGAAGTGGA AAAGCTGCAG AGCAGGGAAT TCTTATTTTC TTTGCTTCCT CTTGACCTAG AACTACATGT
GCTTCCTCTT AATTGATGTG AATCTTGTAC TGGATGTGCT TTTATTTTAC TGTATTTGCA AGTATCATCT TTCAATATTC
ATTTTTAGTT CTTGCTTATG CTCTGTTTGA TTCTAAAAGT AAGCCATTTC AAGTTTCACG GTGTCTTTTA AGGTGTAGTC
ATTCTTATAA AGTATAATAT TAGTTTATGT GATAGTGCTT TCTCATAGAA CCTAATGTTT ATCTTCATCA AATATTTTTC
TTACTGATAG GTTTGGAATG AACGTTCTAT CACGTTTGTT TTGTCCTTTT GTTTTTTGGA GTGGAAGTTA TGTCTTCTAA
TCAAACACAT TAAACATAAT ATTTGGAAAA CTCATTTTTT ATCATTTATT ACTTCTTGAA GTAATGAGCA GGTCATTTGT
CTTCTCTACT TTCAATCAAA ATTGATTGAT TGTATCAGTC TATATATTAA TATTGTTTAT AAATTATTGC TAAATTAATG
TTAAAAATAA TTTAATATCT CTAAATGGCT TAATTGATTA TGCTGTGTCC ATCAGGTAAC ATATCACTTT TTTCACTGGA
AGAAAGGAAC TCCATTTGCA GAGGACCAAG GCATCTACAA TAGATTGACA TGGTGGGAGC AGGTAGACAA TGGAAAGCAG
CTTACTCGTA ACAGGAAGTT TCTAACAGTT GTTCCTTTGG TCCTGTAAGT TTTCTAATAT GCAAGCCATA ATTGGTATTT
GCTTTCTGGT GATTGTATAG GATCTGTGAA TGTGTTTGTG TGGTGCACTC ATGGCTATGT AAATTTAAAC AGTATTCCTT
AAAATATTGT TTATACACTG ATGTGAGCAA ATGTATGTGT CATTCCTGTA ATGTTATTCA AGCATTCACT TCTTGGTGTG
CTAGAACTTG CAAATAAGTT TAATGCTTAT GTAGAAACCA TGAATAACAG TTTATCCAAT TCATAGTTGC AAATAATATC
AAATAGTGAC ACAATTGGCC ATGCTATGCT ACTAAAATTG AATAGCATCA CTTTTTGAAG TATTCTCCGT GACAGCTGTG
GTAGATGGCA AAATTGCAGA AAATCGTTGC TGGAATGTGT TATTGGACCT TTTAGCTTGA AAAAAAAAAC TTTTTGAGAC
AGCATTGTTT AGGGCTGTAT TGGGGACAAT TATGGGTTTT GCCCATCTCT TTGAATCAGA ACTGAAACAC TACTTTGTCT
GTCACATGCA TGTTATGAAG TAGCACACCC ACTGTTCTCC TTACCAACAA ACTCCCACCA CTATCCAACA ACATTTCCAA
CATTTTCCAG TATTTCTGGT TAGCTGTGAC AGCTGTTGGT CTTCCATAAC CTCTGTAGTT TTGTGTCATC TCAGATCCCT
ACAGCCCTTT TCTGGCAAAC CTGTCACTGG CTCTGGCAAA CCATGACCTT CTGCCATAGT TTAGTTTTGT CTGTTTTTTA
AATCTCTCCA AAGCATGTTT ATCGTCATGT CTTGTTATGT CTTCTAAGTC TTACCCATTA TTCCTTTTTG TTCTAATTGG
TTACAATGAT AGCCATCACA CTATCCTATT CTAGCATGCT CAGGGTCAGC GACTCCACAC TGCTTTTTGG GATTGGCCAC
TACAGTCCAA TATATTAATT TTTTTTTCAA AACATGTTTT CTTTGGTCGT AAGACTACTG ATCAAATTAG ACTGTCCCTT
TTCACTCATT TTGTGTGTTG ATTCTCTTCT GTGTACGAGA AGATGTCACT TAGCTGCAAT GTAGCTTAAT AAATTGAATG
CCTCTGGAAT TATGGTTGTT TGCTTAGAAG TTCATTATAT TTGAAGGGAT AATCTGTATA ATGAACGTTA CATAACAATT
GTTTTACAAG AAAAAGGAAA ACAAGAATGT TTTTTGAGAA GAAAAGAAAT ATACATACAT ACATATATAT ATACATACAT
ATATATATAC ATACATACAT ATATATATAT ATATATATAT ATATATATAT ATACATAAAA GTAATGTAAA ATGACTACTC
ATGAAAGTTT CTGCATAGCT CCATATCTAT CAAATGGCTT TATATGTCAT TGGACTGTGT CTGAAATCAA GATTTATTTC
AGGAAGGGTA AGAATTTTAT CAGTGTATAA AATCAATTGG ATAGCTAATA CTAAATGTCG ATTCAATAGA TAGTTTTTTT
ATGCTCTCTG TGTGTGCCCC TACAAATTGC TATTATAGAC ATCCAAGAGC TTTATTGGAA GTGTAGGATA TAAATATTGG
GTCAAATATA ATTTAAGAAG CCAAAGAGCC TTCTCGAATG AGTACTAATG TTTGCTAAAA GAATTATATG AAACAAATAT
AAGTTAGCAT AAGATCTGGA GATTTGTATT CTTCATGGTG TTTGGGGCTT GGCTTGATCT ATTATCTGCC TTGAATTTGG
GGTGAAGCTA TTTTTGTCTT TGTAACTGAA ATTTCCAGGG GCTTACATGG CTTAGTTTTT CCTGAGAATT CTTTTGATAG
AACAAATAAT GTTTGGTCTA AAAAACATTT TGACTCCTCT GAAACAAAGG ATTCATTTAT TGCTACTATA TATTTAATGT
AAAATCAATG AAATAAATTT TGACATGATT TCTTACATAT ATCGATTTAT TTTATCACAG TATCAGTAAT TGGTTTTCCA
CTCAATGTTA AAACTGTACA CATTTCTCTC TAAAGGTGCC CCCTACTTTG AGAAACAAAA TCTTAATGAA AAACAAAATT
ACTTAAGAGG ATAAGAAATC CACCTTAACA AAGCGCTGAA GAGAAATAAA GTAAAGAAAT TTGAATACTT CAAAACAACC
TTCTCAAAGA TTCAGTGTAG TAAGCACCAG GGAGAGTCCA AATAGATGGT CATGTAAATT GGCAGATTTT TATTTTTCCC
GAAGATATTC TTGAAAATGA AAGCATTTTT GGATTCCAAA AGCATTGCAC ATAGACTTAC TTTTTAGTGC CGCCAAAATC
GATGAAGTTT ATCATGACTG AATACTGATC CTGTTCAAGT ACCCATTTGG TTCAGTTTAT TTTGGAGAAG TCATTTGGGG
GTGGTTAATA TAAATATTTT CCTAGAACTT TTCATTCCCA AACATTCACT AAAATGGTAC AGCAATCTTG TTTTTCAACA
CTGAGAATTT CAACAGCTGA AGTTAATGCT TGTGGATATG ATTTTGGCTT CAGCAATAGG ATTGCATGTC TGTAGCTTTG
ATGTGATTCG GATTCTTGCA GAAACTGTCC TGAGCATTGA GGAAAAATCT ACTGCACAGG TGTAAAAGTC GCAGTGTTGC
ATGTTACTAA ATGTTAGTTT TTATCAACAA CATAAGCTTT GTACTGCAAA TGTGAGGATG TTATAGAGGA GGAGCAGAAA
ATCATAAGAT GTCACCTGTT GAAAATATGG TAGTATCTTA CCTAAGGATG TTTGACCCTG AGAAAGAAAA AAACCAAGTG
GGGGAAATAG TGCTAACATC TATTGAGGTT AATACGGTTG AGTATCACCT TAGGTTGATT TAAATGGACT TGCTGAGGTT
TTAGTTCTTG ACATAACACA ATGGTTTTGT AGTATTCCAT GGCTGACCCT ACTTAGTGGG GAATTGTCTA ATTTGTAAGG
TCGTCTAATT TGAGAGGTTA GATAAAAGTA AACTCACAAA CTAGTTGTAG TTCATATTCT TTTAAAGATT ATTTAAAAAC
ATGAATGAAA ATAAAACCTG GCATAATTAA ATAACATACG CATTATTAAT ATTCACATTT ATGAATTTGA ACAAAATAAA
AGCTTTATTA TCTTTTATAC CTTGGAAGAT GAAGATCAGT AATAGTTGAT ATTATGAAGT AAATTTCTAT GACCTAGTTA
GAATTTTAAA AGTGAATAGT TCTTTACTGT ATTGTTTGTC ATTGTCAGGT ACTTGATAGC CTCCCACACA ACCGACTATC
AGAATCCAAT GCTGTTCTTC AATACTGTTG CTGTGATTGT GCTGGTTGTT GCAAAGTTCC CCCACATGCA CAAGGTGAGG
ATTTTTGGAA TCAATGCTGA TAAGTGAAAT GTTGAAAACC TGGTCACCTG CTCAAGAGCC TCTTGTCCTT TTGTTCTGGA
AAAAGGTCAC ACCTTTGTAT AGAAGGCAGA AGTGGAAGGA TACTCAAGTA ATGTTTTGTT GCCAACTGCC TTTTAAGCTG
CTTCTAAAGT ATTATTAAAC AAATAAATAT GTTGAGTTAT TTCTGTACAG TAGAGAAGTA TATGTATCGA ATTATAACGG
TGCTTTTAAA ATGTACCTTT CTTTTCTTGC CTTTTTCCTT TTATTCATGC CTCCGAACTG AGATATACAA GAATCATCCT
TTGCATTGGT ATCCAAGTTT ATTGGTATAA CCTTCTCTTT TCAAAATAAA GGTCTTTGTC ATCATGAGCA TAAGTGGAAT
ACTTACCTTA GACGTCATCT GAAATTTGAC AAGTCAAATG CTGAGTTTTG GCCACAAAAA GAAAGTAAAG ACATTCTCGT
ATGAGAGAAA AGTTTTATGA ATGATCTTGT GGAAATTTGA AAACCCATGT CACACTATGT TGAAAACTCA AAG

>Vigan.09G175400.01
TTATTTACGA GTAAAAACCA ATTTAAGCTT TCAATTTCAA TTCCTCCACA CACAGAAACA CACGCCATCC ATCATCCCTG
ATATTTTAAT AAAAGAGAGA GAGAGAGAGG GAGAGAGACA AGGAGAAGGA GAAAGAGAGA GAAAGAGAAG AGGGTGTGTT
TCTGGGTTTT GAAATTTTGA GGCCCCATCA ATCAAAGCCC CATCAAATTG TCCAAGCATT TGAAAGGTGG AAACTTTTGC
ATCTGGGATC GTGTAATTGG GGTTTTGCGT CAAAAGGGTA TCTATCAATC TATATTGGGT TTGATGGCAA ATCTGTACGT
GAAGGCGGTG CCACCGGCGG ATCTGAACCG GAACACGGAG TGGTTTACGT ACCCTGGCGT CTGGACCACC TACATCCTCA
TCCTTTTCTT TTCTTGGATC CTCGTTCTCT CCGTCTTCGG TTGCTCCCCT GGCATCGCAT GGACCATCGT TAATCTCGCA
CATTTTGCTG TAACATATCA CTTTTTTCAC TGGAAGAAAG GAACTCCATT TGCAGAGGAC CAAGGCATCT ACAATAGATT
GACATGGTGG GAGCAGGTAG ACAATGGAAA GCAGCTTACT CGTAACAGGA AGTTTCTAAC AGTTGTTCCT TTGGTCCTGT
ACTTGATAGC CTCCCACACA ACCGACTATC AGAATCCAAT GCTGTTCTTC AATACTGTTG CTGTGATTGT GCTGGTTGTT
GCAAAGTTCC CCCACATGCA CAAGGTGAGG ATTTTTGGAA TCAATGCTGA TAAGTGAAAT GTTGAAAACC TGGTCACCTG
CTCAAGAGCC TCTTGTCCTT TTGTTCTGGA AAAAGGTCAC ACCTTTGTAT AGAAGGCAGA AGTGGAAGGA TACTCAAGTA
ATGTTTTGTT GCCAACTGCC TTTTAAGCTG CTTCTAAAGT ATTATTAAAC AAATAAATAT GTTGAGTTAT TTCTGTACAG
TAGAGAAGTA TATGTATCGA ATTATAACGG TGCTTTTAAA ATGTACCTTT CTTTTCTTGC CTTTTTCCTT TTATTCATGC
CTCCGAACTG AGATATACAA GAATCATCCT TTGCATTGGT ATCCAAGTTT ATTGGTATAA CCTTCTCTTT TCAAAATAAA
GGTCTTTGTC ATCATGAGCA TAAGTGGAAT ACTTACCTTA GACGTCATCT GAAATTTGAC AAGTCAAATG CTGAGTTTTG
GCCACAAAAA GAAAGTAAAG ACATTCTCGT ATGAGAGAAA AGTTTTATGA ATGATCTTGT GGAAATTTGA AAACCCATGT
CACACTATGT TGAAAACTCA AAG

>Vigan.09G175400.01
ATGGCAAATC TGTACGTGAA GGCGGTGCCA CCGGCGGATC TGAACCGGAA CACGGAGTGG TTTACGTACC CTGGCGTCTG
GACCACCTAC ATCCTCATCC TTTTCTTTTC TTGGATCCTC GTTCTCTCCG TCTTCGGTTG CTCCCCTGGC ATCGCATGGA
CCATCGTTAA TCTCGCACAT TTTGCTGTAA CATATCACTT TTTTCACTGG AAGAAAGGAA CTCCATTTGC AGAGGACCAA
GGCATCTACA ATAGATTGAC ATGGTGGGAG CAGGTAGACA ATGGAAAGCA GCTTACTCGT AACAGGAAGT TTCTAACAGT
TGTTCCTTTG GTCCTGTACT TGATAGCCTC CCACACAACC GACTATCAGA ATCCAATGCT GTTCTTCAAT ACTGTTGCTG
TGATTGTGCT GGTTGTTGCA AAGTTCCCCC ACATGCACAA GGTGAGGATT TTTGGAATCA ATGCTGATAA GTGA

>Vigan.09G175400.01
MANLYVKAVP PADLNRNTEW FTYPGVWTTY ILILFFSWIL VLSVFGCSPG IAWTIVNLAH FAVTYHFFHW KKGTPFAEDQ
GIYNRLTWWE QVDNGKQLTR NRKFLTVVPL VLYLIASHTT DYQNPMLFFN TVAVIVLVVA KFPHMHKVRI FGINADK*