GBrowse Details

Vigan.09G169100.01

Basic Information:
Name: Vigan.09G169100.01
Multiple alignment
Variant Information
Position: Chr09:31089861..31093325 (- strand)
Length: 3465
Functional Information:
Description: Similar to Pathogenesis-induced protein. [B5LNQ2, Arachis hypogaea]
InterPro: Polyketide cyclase/dehydrase (IPR019587)
START-like domain (IPR023393)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:397.22,337.91,36.46,109.80,34.27,85.57,145.81,81.62
Arabidopsis thaliana homolog: AT1G01360.1
Automatic updates:
Name: NM_001249399 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500065 (LOC100500065), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:31089861..31090160 (- strand)
Length: 300
Type: three_prime_UTR
Position: Chr09:31090161..31090376 (- strand)
Length: 216
Type: CDS
Position: Chr09:31090763..31090978 (- strand)
Length: 216
Type: CDS
Position: Chr09:31092930..31093055 (- strand)
Length: 126
Type: CDS
Position: Chr09:31093056..31093325 (- strand)
Length: 270
Type: five_prime_UTR

>Vigan.09G169100.01 class=Sequence position=Chr09:31089861..31093325 (- strand)
AAACAATATA ATAAAACATT GTCGGTGGAT TCATGGATTT TTGATGTACT GCCAAGCTAA GCTAAGGTTG ACACTTTTTT
ACACCAACTC TTCTCTCTTT CTATCTCTCT GTACAAGCTT AAGCTTATCT CTCCCCCACC CCACTTGTTG CCTCTGCCCT
ATGTTATAGC CAAAAGGGTG AGAGAGAAAG AAACACAAAC AACAAGCATC GAGAGAAACT AGAGAGAGAA AGAAGTTGAG
TGAGTTTAGA GAGATAGATA AGAGAAGAAG ATGATGAACG GTGACTCTCG CAGTGCTCTT GAGGCACAGT ACATAAGGAG
ACATCACAAA CATGAACTAA GGGAAAACCA GTGCACTTCT GCTCTTGTTA AACACATCAA AGCCCCTGTT CACCTTGTTA
GTTTGCCTTT TCTACCTTAC CTTGTTGGAC CGATTGTGTT GTAAATTGAG TGTCTTTGGT TGGTGGGTCT GATTTGCTTG
ATGAGGGTGG GATGAATTTT TTTCCTTTTT ATTTTTTGGA GATCTGTGAG GTTGTGCTTG TTCTGGGGTG TTTCCTTTGA
GTTTCTAATT TTGTATACTT ATCTGGCTGT GTTTATCATG GCATTTCTCT TTTGTTTTTG TCTTTCTCTT GAAGATGGGT
GGTTAACTGG CTGTTCTAGA TGTTGAGTTA TGTAGATGTT GTCAAAGTTA GATTTTCACC TTTGAAGATG CTGGTTTTTC
TGTTGGGTTT TGACAAAATT TTGAATTGCA GTCCAAGTTG CATGTGATCG CAATAGCAGT GGCGATGATC ATCAGCAATT
GCAGTTGTGA TGCAGTTGCA GTGACTCCAC AAATCTTGAC ACTGCAGTTT TGACTGCTGC AATTGCAGTT ACTGCCATGC
AGTGATTGCA AAAAATAACA GTTTTGAAGT TGAAGCCATA ACTGAAGTTT TTTAAAATCG TGTGTTTTGG TTATGAAATC
AGTTTTTGGG AAGGGTATTT TTCATTTTAC TAAGATGTTT CCTTTGAGTT TTATCTGTTA TACTCACTTA ATTGATTCTT
TTTTTTGTTT GTGCATTTGT TTGTCAAGTC TTCCATAAGA TGGATTTTTC AGCTCATGAG ATATGAGTTT TTTTGTTTGG
TTTTGACAAG ATTTTGAAAA CAGCGCAGCT TTGTCATCAT CTTTGCAGTT GTGAAAAATT GTGAGAAATA TGGCCAATGC
TGCAGCAATT GCATTGGGTG ATGGGTTCCA GTGATTTCAA GAATCTTGAT GTTGTGGCAT AGACTGGGAT TATAGTTGCA
TGTGATTGCT ATGTCTCAAA AATCTTGATG CGGTGGCATC ACTGTAGCTG CATGTGGTTG CAATAACTCC AAAATCCTTG
ATGCTGCAGT GTTGGTCACA ATTGCAGTGG AGATGTGGCC AAAACTGTAG TATTTTTAAA ACCTTATATT TTGGTTGTAA
AATCAGTTGT TGGTGAAGGG TAATCTTCCT CAAATCTGGT CCTGATTGAG TTTTTCCTAT CATGTTTAAT TTTTTAAGAT
GGTGTTTTCT GTTTGTGTGT TTGTTTGTCA AGATTTACAA CAGTTGGATT TTTCATCTCG TGACGCCAGT TTTGAATTGT
GGCTGCTGGT GCTGCTTTGT CACCTTCCTT GTTACTGTGA AAAATTGCAG ACAAATATGT TTTTCTGCTG CCGAAATTGT
AATGGTGATG CAATTGTTGT GAATTAAAAA TCCTTGATGC TGCGACAGCA GAATACAATA ACTCCAAAAA CCTTGACACT
GCAGTGTCAG CCGCAATTTC AGTCACAATG CGGTTGTAGT GACTCCAAAA GCCATCACAC CGAGACTGAA ATTGCGGCTT
TTTGAAACCT TGTGCTTTGG ATTAGCCTTT TGGGAAATCA TCATTTTATC AGGAGGTTTT GTTTGAGGTT TTCCTGTCAC
AGTTACTTCT GAAGATAAAA AAACACAGTA ACCTATTTGA AGGTTTTTCT TTTTGTGTGT GTGAATGAAT TTCTTTGTCA
AGTTTTGTGA ATCAATCCTT CTGGTTAATA GAGGATGTAA GTGGAAAAAG AAGGAAATTT GAAAATGTTG GATGGGGTGC
AGACATAATG GCATAATGGC CTTTAATTCT TTGTTTTTTT GCAGACTTGT TTTCAGTACA TCAAGTAATG TGTAAAATTC
TCAACTTTTA CCAGATTATC AACCAATTTT ATTCTTTTTA TGGACTTTCA ATGAAGGTTC AGTGTCATGA AATTAAAGAA
ATAAGTATAT GTGATGATGG CATGTTTTCT TATTCGGTGG ATTTTAGCAT AGCAGTATAG GAAAAAAGTA TTTGATTGAA
ATATAAAGCA TTTGTTTCCC TTCCCAGGTG TGGTCGCTGG TTAGAAGATT TGATCAACCC CAGAAATATA AACCATTTGT
TAGCAGATGT ATCATGCAAG GAGACCTTGG CATTGGAAGT GTTAGAGAAG TGAATGTTAA ATCTGGCCTT CCAGCCACAA
CAAGTACTGA GAGGTTGGAA CAACTTGATG ATGAGGAGCA CATTCTTGGC ATTAGGATTG TTGGAGGTGA CCATAGGCTG
AGGGTATGAT CCTTTTTTCT TCCTTAATTT ATTAGGTTGT TCCTTAATTT CTTTTTCTTT ATAGGAATTC TGGAATTTGT
TGAGTAATGG AAAATAGTCT GAAAGAATTG TGATTCCAGA GTCTCCTGTT TGTTCTGTGT ATTTTATCTG TTTATTCTAT
AATTTCTAAT CCTTTCAGCC TTGCTTTAAT CAAAAGAAAC ATTTCACTAT GGTAACTATG GCCAGTTTTA ATCTCAGAGA
AGAAAGCAAA TGTTACCAAG ATGAAATGCG ACTATTTGTT TGAGTATGGA TGGTTTGCAC TGAGGAACAG CTAAACTATT
AAGTTTGTCA CTTCATTTCC TATGATGTTA TGGTGTCAGT ATAATAATGA TGTTTTGTGG AATTTGCAGA ACTATTCTTC
CATAATAACA GTGCATCCAG AGGTGATTGA GGGAAGACCT GGAACAATGG TGATTGAATC ATTTGTGGTG GATGTGCCTG
ATGGAAACAC TAAGGATGAA ACTTGCTACT TTGTGGAGGC TTTGATCAGG TGTAACCTAA GCTCTCTTGC TGATGTCTCA
GAGAGGATGG CAGTTCAAGG CCGAACCGAT CCCATCAACC ATTAAGCATG TCTGGGGGAG AATGAAGTTG GTTCATGATC
CATTGCTCTC TGATCTAGTT CCAGTGTGAA CATTGGTTGG AGTATTCCTT CCATGTTCCC AGAAGTTTTG GAAGTTTTTC
CTCTGTATCA TGGATACAAT TCCCCTACCA TCTCTCACAA GTTTTGTAAG ATGAGATTCT GAGCCTCATA TGGGGATGGT
TGGGGAAAGT TTTTTACCTG CTCTTTTCTT CCTGGATTTT GTGAATGGTG GTTTGTTACT ACAGTTGTCT GTAAATATTT
TCGTTGAGAC AAAACCAGTT TCTGC

>Vigan.09G169100.01
AAACAATATA ATAAAACATT GTCGGTGGAT TCATGGATTT TTGATGTACT GCCAAGCTAA GCTAAGGTTG ACACTTTTTT
ACACCAACTC TTCTCTCTTT CTATCTCTCT GTACAAGCTT AAGCTTATCT CTCCCCCACC CCACTTGTTG CCTCTGCCCT
ATGTTATAGC CAAAAGGGTG AGAGAGAAAG AAACACAAAC AACAAGCATC GAGAGAAACT AGAGAGAGAA AGAAGTTGAG
TGAGTTTAGA GAGATAGATA AGAGAAGAAG ATGATGAACG GTGACTCTCG CAGTGCTCTT GAGGCACAGT ACATAAGGAG
ACATCACAAA CATGAACTAA GGGAAAACCA GTGCACTTCT GCTCTTGTTA AACACATCAA AGCCCCTGTT CACCTTGTGT
GGTCGCTGGT TAGAAGATTT GATCAACCCC AGAAATATAA ACCATTTGTT AGCAGATGTA TCATGCAAGG AGACCTTGGC
ATTGGAAGTG TTAGAGAAGT GAATGTTAAA TCTGGCCTTC CAGCCACAAC AAGTACTGAG AGGTTGGAAC AACTTGATGA
TGAGGAGCAC ATTCTTGGCA TTAGGATTGT TGGAGGTGAC CATAGGCTGA GGAACTATTC TTCCATAATA ACAGTGCATC
CAGAGGTGAT TGAGGGAAGA CCTGGAACAA TGGTGATTGA ATCATTTGTG GTGGATGTGC CTGATGGAAA CACTAAGGAT
GAAACTTGCT ACTTTGTGGA GGCTTTGATC AGGTGTAACC TAAGCTCTCT TGCTGATGTC TCAGAGAGGA TGGCAGTTCA
AGGCCGAACC GATCCCATCA ACCATTAAGC ATGTCTGGGG GAGAATGAAG TTGGTTCATG ATCCATTGCT CTCTGATCTA
GTTCCAGTGT GAACATTGGT TGGAGTATTC CTTCCATGTT CCCAGAAGTT TTGGAAGTTT TTCCTCTGTA TCATGGATAC
AATTCCCCTA CCATCTCTCA CAAGTTTTGT AAGATGAGAT TCTGAGCCTC ATATGGGGAT GGTTGGGGAA AGTTTTTTAC
CTGCTCTTTT CTTCCTGGAT TTTGTGAATG GTGGTTTGTT ACTACAGTTG TCTGTAAATA TTTTCGTTGA GACAAAACCA
GTTTCTGC

>Vigan.09G169100.01
ATGATGAACG GTGACTCTCG CAGTGCTCTT GAGGCACAGT ACATAAGGAG ACATCACAAA CATGAACTAA GGGAAAACCA
GTGCACTTCT GCTCTTGTTA AACACATCAA AGCCCCTGTT CACCTTGTGT GGTCGCTGGT TAGAAGATTT GATCAACCCC
AGAAATATAA ACCATTTGTT AGCAGATGTA TCATGCAAGG AGACCTTGGC ATTGGAAGTG TTAGAGAAGT GAATGTTAAA
TCTGGCCTTC CAGCCACAAC AAGTACTGAG AGGTTGGAAC AACTTGATGA TGAGGAGCAC ATTCTTGGCA TTAGGATTGT
TGGAGGTGAC CATAGGCTGA GGAACTATTC TTCCATAATA ACAGTGCATC CAGAGGTGAT TGAGGGAAGA CCTGGAACAA
TGGTGATTGA ATCATTTGTG GTGGATGTGC CTGATGGAAA CACTAAGGAT GAAACTTGCT ACTTTGTGGA GGCTTTGATC
AGGTGTAACC TAAGCTCTCT TGCTGATGTC TCAGAGAGGA TGGCAGTTCA AGGCCGAACC GATCCCATCA ACCATTAA

>Vigan.09G169100.01
MMNGDSRSAL EAQYIRRHHK HELRENQCTS ALVKHIKAPV HLVWSLVRRF DQPQKYKPFV SRCIMQGDLG IGSVREVNVK
SGLPATTSTE RLEQLDDEEH ILGIRIVGGD HRLRNYSSII TVHPEVIEGR PGTMVIESFV VDVPDGNTKD ETCYFVEALI
RCNLSSLADV SERMAVQGRT DPINH*