GBrowse Details

Vigan.09G160700.01

Basic Information:
Name: Vigan.09G160700.01
Multiple alignment
Variant Information
Position: Chr09:30124297..30126158 (+ strand)
Length: 1862
Functional Information:
Description: Similar to Uncharacterized protein. [Q9XER5, Glycine max]
GO: Biological Process: response to desiccation (GO:0009269)
InterPro: Late embryogenesis abundant protein, LEA-14 (IPR004864)
Immunoglobulin-like fold (IPR013783)
Water stress and hypersensitive response domain (IPR013990)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:8601.59,1886.27,0.46,0.93,0.44,541.57,0.91,0.34
Automatic updates:
Name: NM_001251006 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max seed maturation protein PM22 (PM22), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:30124297..30124453 (+ strand)
Length: 157
Type: five_prime_UTR
Position: Chr09:30124454..30124659 (+ strand)
Length: 206
Type: CDS
Position: Chr09:30125661..30125913 (+ strand)
Length: 253
Type: CDS
Position: Chr09:30125914..30126158 (+ strand)
Length: 245
Type: three_prime_UTR

>Vigan.09G160700.01 class=Sequence position=Chr09:30124297..30126158 (+ strand)
GCGACACGTA CTGGTAAGAA ACACACGTGT CAGTAGCAGA TCCTCGTACT GGCATACTAG GACAGGGATT TCACTTAGGT
GTTCTTATAT AAATTGGTTA TGCATCAGTT ACGTTCTTCA GAGTTCCAGT ATTAAGAGTA TTGTTGCAAA GTAAAAAATG
TCGCAGTTGT TGAATAAAGC GAAGAACTTC GTGTCGGAGA AGGTAAACGA GATGGCGAAG CCTGAGGCGA GTGTGAGCGA
TGTGGACTTC AAGCGCGTGA GCAAAGATAG CATGGAATAC TTGGTGAAGG TAGCTGTTCG TAACCCTTAT TCAACTCCCA
TACCCATATG TGAGATCAGA TACTCTTTCA AAAGCGCGTC AAGGTACCCT TTCTCACTGT TACATAAATT ACACTCTATT
TCAATTCTCA AATTAACTCA CAAGGAAGTA AAGTATATAT GAAAAAAGAA ATTTACTTTC TGCAAAATAA AAAGAATAAA
TAAATTATGA ACTTAGTTAG AAAACACTCA TGATAAACTG TAAGTATATA CAAATCAAAT TAAAATGAGT AAATAGATAC
AATTTTAATA TAATAATTTT GATTTTATTT TCATCAATCA TAATTTTAAT TCACAACTTT AATTTCATTA ATTCACAATT
TCAATTCTAT TAATTCACTG TTTGTCACTT CTTAATATTT AATCAGAAGG ACAATTAATT ATAATAATTA ATTAACCTTT
AATTAAATTT TGCTAAGTCT AAAAGTGGAT TCAATTAAAA AAATCTTATT TTACTAAAAG TAAAATAAAA ACATATATAT
TACACTAAAC TTATTGTTTA TCCAATTAAA ATTATCACAA ATCCTAGACC TTAAACCAGT TCACCAATTA AAAACAACCA
ACAATTCTTA CTTAATTGAG TAAAACTGCG TTAATTAAAG AATATTTGTA AAAGTTTATT ATAACCTTAA AATTCCGAAT
CTTATGAGAA CAGAAGAGCT GTCGGCTTAA TTTTACATGT ACTAAAATTA AAAATCTGAT TTATTAAAGA AAACTACTCT
TAAAATATCT TTAAGATTTA AATATTTTAA ACGACAACAC TTTTTTAATA AAAGAATAAA ATTATTCAAA ATAATAATTA
CGAAAAATAG GTATTTAATT AAAAATATAT AAAATTTTGA ACATTTAATA ATAAAAAATA ACAAAAACTC AATTAAAAAT
ATCAACACCA TCGAGTTTAC GAAGTACTCA AATTTAATTA AATCTTTTAT TTAAGACTTT TATTCAATCA ACGAAAACAG
AAATGCATCA GCAGTTGATA AATGCATTCT CAATAATATT GTAAACAAGG TTTTTTTTTT ATGTTTTTGT GTTGTGTGGT
GAAGGGAGAT AGCATCAGGG ACAATTCCAG ACCCAGGATC TTTGAAGTCA AAGGACACGA CCATGGTGGA TGTGCCAGTT
AAGGTTCCAT ACAGCATATT AATGTCCTTA GCAAGGGACA TTGGTGCCGA CTGGGACATC GACTACCAAC TCGACATTCG
TCTCATTATT GACCTTCCTG TCATTGGCAA CTTCACCATT CCTCTCTCTC ACAGCGGAGA GATCAAGCTT CCAACCCTCT
CTACCATGTT TGCCTAAGCC TTCCTTCCAA CACCATCATT TCCTTTCCTT TTATATGTAT CTTTCCACCC TTTTGCATCT
TCCTCAAACT ATATATGTAC ATCGTCTTAT AATAAAACCA CTCTTCATAT GTATGCTTGT AAACTTCATA AACGTATGCT
CGTCTTTCTT TTATGCCATT AAGTATTAGT TGTATGACTT TTTTATGGGA CTGAGTGTAT TACTTGTTGT TTTATAAATC
TTTTTCTGAA AGATAATGCT AT

>Vigan.09G160700.01
GCGACACGTA CTGGTAAGAA ACACACGTGT CAGTAGCAGA TCCTCGTACT GGCATACTAG GACAGGGATT TCACTTAGGT
GTTCTTATAT AAATTGGTTA TGCATCAGTT ACGTTCTTCA GAGTTCCAGT ATTAAGAGTA TTGTTGCAAA GTAAAAAATG
TCGCAGTTGT TGAATAAAGC GAAGAACTTC GTGTCGGAGA AGGTAAACGA GATGGCGAAG CCTGAGGCGA GTGTGAGCGA
TGTGGACTTC AAGCGCGTGA GCAAAGATAG CATGGAATAC TTGGTGAAGG TAGCTGTTCG TAACCCTTAT TCAACTCCCA
TACCCATATG TGAGATCAGA TACTCTTTCA AAAGCGCGTC AAGGGAGATA GCATCAGGGA CAATTCCAGA CCCAGGATCT
TTGAAGTCAA AGGACACGAC CATGGTGGAT GTGCCAGTTA AGGTTCCATA CAGCATATTA ATGTCCTTAG CAAGGGACAT
TGGTGCCGAC TGGGACATCG ACTACCAACT CGACATTCGT CTCATTATTG ACCTTCCTGT CATTGGCAAC TTCACCATTC
CTCTCTCTCA CAGCGGAGAG ATCAAGCTTC CAACCCTCTC TACCATGTTT GCCTAAGCCT TCCTTCCAAC ACCATCATTT
CCTTTCCTTT TATATGTATC TTTCCACCCT TTTGCATCTT CCTCAAACTA TATATGTACA TCGTCTTATA ATAAAACCAC
TCTTCATATG TATGCTTGTA AACTTCATAA ACGTATGCTC GTCTTTCTTT TATGCCATTA AGTATTAGTT GTATGACTTT
TTTATGGGAC TGAGTGTATT ACTTGTTGTT TTATAAATCT TTTTCTGAAA GATAATGCTA T

>Vigan.09G160700.01
ATGTCGCAGT TGTTGAATAA AGCGAAGAAC TTCGTGTCGG AGAAGGTAAA CGAGATGGCG AAGCCTGAGG CGAGTGTGAG
CGATGTGGAC TTCAAGCGCG TGAGCAAAGA TAGCATGGAA TACTTGGTGA AGGTAGCTGT TCGTAACCCT TATTCAACTC
CCATACCCAT ATGTGAGATC AGATACTCTT TCAAAAGCGC GTCAAGGGAG ATAGCATCAG GGACAATTCC AGACCCAGGA
TCTTTGAAGT CAAAGGACAC GACCATGGTG GATGTGCCAG TTAAGGTTCC ATACAGCATA TTAATGTCCT TAGCAAGGGA
CATTGGTGCC GACTGGGACA TCGACTACCA ACTCGACATT CGTCTCATTA TTGACCTTCC TGTCATTGGC AACTTCACCA
TTCCTCTCTC TCACAGCGGA GAGATCAAGC TTCCAACCCT CTCTACCATG TTTGCCTAA

>Vigan.09G160700.01
MSQLLNKAKN FVSEKVNEMA KPEASVSDVD FKRVSKDSME YLVKVAVRNP YSTPIPICEI RYSFKSASRE IASGTIPDPG
SLKSKDTTMV DVPVKVPYSI LMSLARDIGA DWDIDYQLDI RLIIDLPVIG NFTIPLSHSG EIKLPTLSTM FA*