GBrowse Details

Vigan.09G158700.01

Basic Information:
Name: Vigan.09G158700.01
Multiple alignment
Variant Information
Position: Chr09:29789897..29791802 (- strand)
Length: 1906
Functional Information:
Description: Similar to Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial. [V7AN71, Phaseolus vulgaris]
GO: Biological Process: ubiquinone biosynthetic process (GO:0006744)
Cellular Component: mitochondrial inner membrane (GO:0005743)
InterPro: Ubiquinone biosynthesis protein Coq4 (IPR007715)
Ubiquinone biosynthesis protein Coq4, eukaryotes (IPR027540)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:26.62,14.87,9.05,9.63,11.31,16.82,8.84,8.45
Arabidopsis thaliana homolog: AT2G03690.1
Automatic updates:
Name: NM_001255590 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ubiquinone biosynthesis protein COQ4 homolog, mitochondrial-like (LOC100787101), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:29789897..29790087 (- strand)
Length: 191
Type: three_prime_UTR
Position: Chr09:29790088..29790579 (- strand)
Length: 492
Type: CDS
Position: Chr09:29790936..29791118 (- strand)
Length: 183
Type: CDS
Position: Chr09:29791119..29791802 (- strand)
Length: 684
Type: five_prime_UTR

>Vigan.09G158700.01 class=Sequence position=Chr09:29789897..29791802 (- strand)
GTAACCAACC TTCGCTCTTT GCTTCCCAGA ATTTCTCTCT CCATAATTTG TGTTTTCACT TTTTCTTGTT CCTTTTTTCT
GTCCTCCTTT TCCAATTAAT CTGATAATGG ATGATTGTCT TTGGTTTGAT GCGCTGAAAG TGTTCGGTGA TTCTGACAGT
TTTATTTTTC GGATAAAATG TTTTAGACTT GCCTGATTGA TATTAGGATG TTAGATGTTT TATGGTTTTG ATGTTTCCTA
TAGTTAGTTC TATACTGAGG GTGTTGGTTC ACTATTTATT GCTCTTGCCA AGGTTAATTT GAATGTTTAT CATTCATCAA
GACCAAAAGC CGCCTTTTTT TTTGGAGATG TAGTTTTTCA TTGAAACAGT GATTCCCATT AAGTAAGAAG GAATAGAGGA
AATGATTCGG GCTTCGCTTC CAAACTCAGT CTACTAGCTT TTCAAGTTTC ATGATTTTCT ATTACACTCA CATTTTCTTG
GGTTCACTTT CCTTTGATTT CGGTTACTAC TAGGGTTTCA CGGTCTTCAA TAACACTCGC ATTTTATTTC TTTCCCTTCC
CCTTGATTTG TTCTCGTTTT CTCAGCTTTT GTTGAATCAA AAGTTGATAA AATTGGTTTT CTTTCTGACA AATAGTGATG
TATGGAATCA GATTGGAAAG GTTAGTTCTG GTTAGTTATC TGCAATGATA GAAGGTAGTA GAATCCGGTT GAAGACATGG
CAGCAGGCTG CTGTGGCAGT GGGTTCGGCA GTGGGGGCAT TGTTGGACCC TCGAAGAGCA GATTTGATAG CGGCTCTTGG
TGAGACGACT GGAAAGCCTG CTTTTGAGAA AGTTCTTCAG AGGATGAAGA GTTGCCCTGA AGGGAAGGTG AGCTAGTTTA
TTTTATTATA ATCTTATTAG TTTTTGGTTA ATGTGGATGT TCTCCTTGCT CATGCTGTTT CCGATGTTGA TTTATTCTAT
TTGCTTTTTG TTGGATGCTC TATAGCTAGT ACTAGCAACA ACCATAGTTT ATTTGTTCTT GAGATGACAA AGAGTTTAGG
ATCAGGTGAT GGGTGGCCCT TGGTTTTACT CATTGATAAA AGTGATTATG AACACCTATC ACTTATCACT AACAATCACT
ATCATTCTTA TCACTAAATT AACTGGCATT ATTTTTTGCC TGTTGAAGCA TACAATTATG CCACATCAAA CCAATCGTTT
TCTTTTATAA TTCTGATTTA TAGGCTGTGT TATTGGAGCG CCCTCGTGTT GTTTCTGCAA ATGTCGGACA TGCTTGGGAC
CTGCTGGAAA ACACATTCGG TGCTGCCTAT GCTAGGTTTA TGGGATCCAG GAACTTTTCA CCAGATGATC GACCTCCTGT
TCGGTTCATG GATACAGATG AACTGGCCTA TGTAACAATG AGAGCTCGTG AAGTGCATGA CTTCTGGCAT ACCCTTTTTG
ACCTTCCCAC TAACTTGATT GGGGAGACAG CGTTGAAGGT TATTGAGTTT GAGCAGATGG GCCTTCCTAT GTGCCTGCTG
TCCGTTGTAG GGGGCACCGC TAGATTCAGT GGAAAGCAGA GGAAATTGTT TTATCAGCAT TACTTCCCCT GGGCTATTCG
TGCTGGCATG CAATGCACTG ATCTTATGTG TGTGTATTAT GAGCGGCATT TTCACGAAGA CTTGGAAGAT GTTCGCAGAA
AACTGCAAAT TGTTCCTGCT CCCGTCGTTC CTTAGCTGTA TGTATTCGGA CATGAAAGTT GTTTTGGTGA TGGCATTGTG
CTAGAGCTTT GCTATCCATA TTTTGGAATA AAATCAACTG TACAACCTTT TCCTCTAATA TCTTAGTCAA TTAGTTTTGT
ATTTGTTGGA TTTTATCATA TGATCAGTAA AATAGACTTA CATTACAATC ACAACTATTT TTCAAC

>Vigan.09G158700.01
GTAACCAACC TTCGCTCTTT GCTTCCCAGA ATTTCTCTCT CCATAATTTG TGTTTTCACT TTTTCTTGTT CCTTTTTTCT
GTCCTCCTTT TCCAATTAAT CTGATAATGG ATGATTGTCT TTGGTTTGAT GCGCTGAAAG TGTTCGGTGA TTCTGACAGT
TTTATTTTTC GGATAAAATG TTTTAGACTT GCCTGATTGA TATTAGGATG TTAGATGTTT TATGGTTTTG ATGTTTCCTA
TAGTTAGTTC TATACTGAGG GTGTTGGTTC ACTATTTATT GCTCTTGCCA AGGTTAATTT GAATGTTTAT CATTCATCAA
GACCAAAAGC CGCCTTTTTT TTTGGAGATG TAGTTTTTCA TTGAAACAGT GATTCCCATT AAGTAAGAAG GAATAGAGGA
AATGATTCGG GCTTCGCTTC CAAACTCAGT CTACTAGCTT TTCAAGTTTC ATGATTTTCT ATTACACTCA CATTTTCTTG
GGTTCACTTT CCTTTGATTT CGGTTACTAC TAGGGTTTCA CGGTCTTCAA TAACACTCGC ATTTTATTTC TTTCCCTTCC
CCTTGATTTG TTCTCGTTTT CTCAGCTTTT GTTGAATCAA AAGTTGATAA AATTGGTTTT CTTTCTGACA AATAGTGATG
TATGGAATCA GATTGGAAAG GTTAGTTCTG GTTAGTTATC TGCAATGATA GAAGGTAGTA GAATCCGGTT GAAGACATGG
CAGCAGGCTG CTGTGGCAGT GGGTTCGGCA GTGGGGGCAT TGTTGGACCC TCGAAGAGCA GATTTGATAG CGGCTCTTGG
TGAGACGACT GGAAAGCCTG CTTTTGAGAA AGTTCTTCAG AGGATGAAGA GTTGCCCTGA AGGGAAGGCT GTGTTATTGG
AGCGCCCTCG TGTTGTTTCT GCAAATGTCG GACATGCTTG GGACCTGCTG GAAAACACAT TCGGTGCTGC CTATGCTAGG
TTTATGGGAT CCAGGAACTT TTCACCAGAT GATCGACCTC CTGTTCGGTT CATGGATACA GATGAACTGG CCTATGTAAC
AATGAGAGCT CGTGAAGTGC ATGACTTCTG GCATACCCTT TTTGACCTTC CCACTAACTT GATTGGGGAG ACAGCGTTGA
AGGTTATTGA GTTTGAGCAG ATGGGCCTTC CTATGTGCCT GCTGTCCGTT GTAGGGGGCA CCGCTAGATT CAGTGGAAAG
CAGAGGAAAT TGTTTTATCA GCATTACTTC CCCTGGGCTA TTCGTGCTGG CATGCAATGC ACTGATCTTA TGTGTGTGTA
TTATGAGCGG CATTTTCACG AAGACTTGGA AGATGTTCGC AGAAAACTGC AAATTGTTCC TGCTCCCGTC GTTCCTTAGC
TGTATGTATT CGGACATGAA AGTTGTTTTG GTGATGGCAT TGTGCTAGAG CTTTGCTATC CATATTTTGG AATAAAATCA
ACTGTACAAC CTTTTCCTCT AATATCTTAG TCAATTAGTT TTGTATTTGT TGGATTTTAT CATATGATCA GTAAAATAGA
CTTACATTAC AATCACAACT ATTTTTCAAC 

>Vigan.09G158700.01
ATGATAGAAG GTAGTAGAAT CCGGTTGAAG ACATGGCAGC AGGCTGCTGT GGCAGTGGGT TCGGCAGTGG GGGCATTGTT
GGACCCTCGA AGAGCAGATT TGATAGCGGC TCTTGGTGAG ACGACTGGAA AGCCTGCTTT TGAGAAAGTT CTTCAGAGGA
TGAAGAGTTG CCCTGAAGGG AAGGCTGTGT TATTGGAGCG CCCTCGTGTT GTTTCTGCAA ATGTCGGACA TGCTTGGGAC
CTGCTGGAAA ACACATTCGG TGCTGCCTAT GCTAGGTTTA TGGGATCCAG GAACTTTTCA CCAGATGATC GACCTCCTGT
TCGGTTCATG GATACAGATG AACTGGCCTA TGTAACAATG AGAGCTCGTG AAGTGCATGA CTTCTGGCAT ACCCTTTTTG
ACCTTCCCAC TAACTTGATT GGGGAGACAG CGTTGAAGGT TATTGAGTTT GAGCAGATGG GCCTTCCTAT GTGCCTGCTG
TCCGTTGTAG GGGGCACCGC TAGATTCAGT GGAAAGCAGA GGAAATTGTT TTATCAGCAT TACTTCCCCT GGGCTATTCG
TGCTGGCATG CAATGCACTG ATCTTATGTG TGTGTATTAT GAGCGGCATT TTCACGAAGA CTTGGAAGAT GTTCGCAGAA
AACTGCAAAT TGTTCCTGCT CCCGTCGTTC CTTAG

>Vigan.09G158700.01
MIEGSRIRLK TWQQAAVAVG SAVGALLDPR RADLIAALGE TTGKPAFEKV LQRMKSCPEG KAVLLERPRV VSANVGHAWD
LLENTFGAAY ARFMGSRNFS PDDRPPVRFM DTDELAYVTM RAREVHDFWH TLFDLPTNLI GETALKVIEF EQMGLPMCLL
SVVGGTARFS GKQRKLFYQH YFPWAIRAGM QCTDLMCVYY ERHFHEDLED VRRKLQIVPA PVVP*