GBrowse Details

Vigan.09G147300.01

Basic Information:
Name: Vigan.09G147300.01
Multiple alignment
Variant Information
Position: Chr09:28168876..28171390 (+ strand)
Length: 2515
Functional Information:
Description: Similar to Uncharacterized protein. [G7LCN6, Medicago truncatula]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: C2 domain (IPR000008)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.52,0.66,20.18,11.93,87.52,153.29,64.85,56.04
Automatic updates:
Name: NM_001248580 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500006 (LOC100500006), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:28168876..28169141 (+ strand)
Length: 266
Type: five_prime_UTR
Position: Chr09:28169142..28169208 (+ strand)
Length: 67
Type: CDS
Position: Chr09:28169778..28169843 (+ strand)
Length: 66
Type: CDS
Position: Chr09:28169939..28170065 (+ strand)
Length: 127
Type: CDS
Position: Chr09:28170689..28170803 (+ strand)
Length: 115
Type: CDS
Position: Chr09:28171070..28171144 (+ strand)
Length: 75
Type: CDS
Position: Chr09:28171145..28171390 (+ strand)
Length: 246
Type: three_prime_UTR

>Vigan.09G147300.01 class=Sequence position=Chr09:28168876..28171390 (+ strand)
TTAATATTAA CTGGAAGCTG GCGTTTAGTC CAAGTCGTGT AATAATTTCT TGGGTTAACG GCAACCTTTT GAAATAAAGG
AGAGAAACGT TTTGAGGAAA GTTGGATCCA GGAAAAATCC ATCTCCAATT GGCACTATTC GGTTCAGGCA CTTTCTGGTA
CAGTGATTTT CACCATTTTT TCAACTATAT TAAGACTTCA CAGAAGAAGC ATCTTGAGTC AAATAGAATC TGTCAAGTGT
TGTGTGTCCA AACTTCAATT TCAAAGATGC CTCGTGGAAC GCTTGAAGTT ATTTTGATCA GCGCAAAAGG CCTTGATGAC
AATGATTTTC TCTGTAAGCT AACTCTAAGT TTATGCTCAG CTGATAAGAA ACTGTTTGTA GCAATGATTT CCTCTTCATA
GATATTTCAT GAATTATGAA ACTGTGATCA GAAAGTTTTT TTTTTTTTAC TTTTAGCTGC ATCAGAATTC TCTCACTATA
TGAGGGTTTG GTTTAGATCT TTGTTATTGT ATAAATCTCT CTTATTTGGA GATTAAATTG CAAAACGGGC ATATTGTGGT
CTGATCTTGG TATGTTCTGT TTGGATCCAG CTTCTATAAA GTCAACAAAT CACTTTAGAG GGTAAAGTAA GTAATTTTAG
CTGTTGATGA GAAAATCAAT GTTCAGTGTC ACATCTATAT ACATAATTAG GTATGAATGT GTTTGAATAC CAACAATTGA
TTTTCTCATC AAATTTGTTT GGTTCATGTA GCTATGTTAA TTGAGTCTCT CTTGTATTCA AATTGAACAT TGGAATCATA
TAAGTTGACC TTTTTCTTTG ATCTGGTTTT TGGGTGTTAA CAGTTCATAT TGATCAAGAT ATAACACTCT CTAACTGCTT
GATTTTGTTC TTCAATGAGC AGCCAGCATA GATCCTTATG TGATTCTCAC ATACAGGACA CAGGAGCACA AGAGCACTGT
GCAAGAAGGT GCATCTCTGG CCAACTTAAC TCAATATATG CTAATTTATG TACCATTTTA TGTTTTGTGA CTTGAATTGA
TTAGTGTTCT ATATGAATAC CAGATTCTGG ATCCAAACCT CAATGGAACG AGAGCTTTCT TTTCACTGTT TCTGACAGTA
CTTCTGAACT GAATCTCAAG ATCATGGATA AAGATAACTT TACTCAGGAT GATTCTCTTG GCGAGACAAA GTGAGTTAAA
TTCTCCTTTA ACTTTTACAT TTTGCTTACC TTGTCAGTGA AACTTCACTG AAGATAGGAC CGAATTCAAT AGAGAGACTA
AAGAGTAATA GACCAAACAT ATTGTACCTT TCAGCATAAA GTAAATGTTC TTTCTAGTAT TCCATAAGCT CTGTCTATCA
TCACTTATCC GTAGAATTTA AGAAAAAATT CACATGACAC CATCTGATAG AAGAACTAGA AGGTAAAGAT ATATTAGAAA
CTTGATCATA GCTGCATGTA ATGTTGTATG GTGTAAAGGG AAATGTTAGT AGCACTTTTA TTAATTGAAG TTTATTGGTC
ATCACAAAAC TTAGTGGACA TGTTACTCAT GATTTTGTAA TTTTTAATGA ACTTTAGCCA ACAACAGAAA GTTTTGTTAG
CATAACTTTG GTCTAAATTC TGCATTTCTG GTGAACTAAC AGATGTTACA AATTTTCTGC CTAGCCATGG TCTTCAGTGT
TTTTTTTTTG TGTTTTCCAA TTCAATATTT TATTTTGCAA TTTCATGGCA TGAGTAATTG TCTCTGATGA AAAAGGGAGG
ATCATTTTCA CTTTTTTCGT ACTGATGCAT TCACTTTTAT CTGCATTCTG CAGCATTGAT TTAGGTCCAC TGTTTGAAGT
GGGTAGCCTT CCAGAAACTG TTCACAAGGT TGTGAAGGAC GAAGAATATT GTGGAGAGAT TAAGGTGGCT CTCACTTTCA
CTCCTGAGGT AATACTGGAA TCTTTTTTCC TATTATTTTT CTTTTCTCTC CATTCAAATA ATATATACCA TATAGCCAAT
TCTGAAGAAA AAAGTATTAT GCTACAATCA TGAAATGTAA AACATTATAA ATGGCTGCAA AGATATTTGT TATCTATTGC
AAATTTCATC AGACTTACAT ATAAATGCTG ATCTTTTATT TGATGAGATT GTAGCATAAT ACTTTTTTCT TCAGAACTGA
ATAAATAATG TACCATTTTG ATATCTGGTT GCAGAGAAAC GAAGAGCAGG AATACAGTGT AGGAGATGAG AGCTATGGTG
GATGGAAAGA ATCAAGTGGG GAATTCTAGA GTGAAAGAAA TGCTTACATA CTTCTTTGGT TTGGCGCATA ATTAATTTTA
CAATGAGAAA CAAAGCATTT TTGGGTCACA TTTTGGAAAT TTTAATTATT GTGCTTTCTG GTGTGAAAAT CCAATGGTGT
TTTGCTGTTT GCTTGCCTTT CTGCCATACA AAAATACATT TTGCTTGACA TGTTTTCTTT TATGCAGTTA ACATTTTAAG
AGCAATGTTA TTTTCATTAT AATGATTATT ATTAA

>Vigan.09G147300.01
TTAATATTAA CTGGAAGCTG GCGTTTAGTC CAAGTCGTGT AATAATTTCT TGGGTTAACG GCAACCTTTT GAAATAAAGG
AGAGAAACGT TTTGAGGAAA GTTGGATCCA GGAAAAATCC ATCTCCAATT GGCACTATTC GGTTCAGGCA CTTTCTGGTA
CAGTGATTTT CACCATTTTT TCAACTATAT TAAGACTTCA CAGAAGAAGC ATCTTGAGTC AAATAGAATC TGTCAAGTGT
TGTGTGTCCA AACTTCAATT TCAAAGATGC CTCGTGGAAC GCTTGAAGTT ATTTTGATCA GCGCAAAAGG CCTTGATGAC
AATGATTTTC TCTCCAGCAT AGATCCTTAT GTGATTCTCA CATACAGGAC ACAGGAGCAC AAGAGCACTG TGCAAGAAGA
TTCTGGATCC AAACCTCAAT GGAACGAGAG CTTTCTTTTC ACTGTTTCTG ACAGTACTTC TGAACTGAAT CTCAAGATCA
TGGATAAAGA TAACTTTACT CAGGATGATT CTCTTGGCGA GACAAACATT GATTTAGGTC CACTGTTTGA AGTGGGTAGC
CTTCCAGAAA CTGTTCACAA GGTTGTGAAG GACGAAGAAT ATTGTGGAGA GATTAAGGTG GCTCTCACTT TCACTCCTGA
GAGAAACGAA GAGCAGGAAT ACAGTGTAGG AGATGAGAGC TATGGTGGAT GGAAAGAATC AAGTGGGGAA TTCTAGAGTG
AAAGAAATGC TTACATACTT CTTTGGTTTG GCGCATAATT AATTTTACAA TGAGAAACAA AGCATTTTTG GGTCACATTT
TGGAAATTTT AATTATTGTG CTTTCTGGTG TGAAAATCCA ATGGTGTTTT GCTGTTTGCT TGCCTTTCTG CCATACAAAA
ATACATTTTG CTTGACATGT TTTCTTTTAT GCAGTTAACA TTTTAAGAGC AATGTTATTT TCATTATAAT GATTATTATT
AA

>Vigan.09G147300.01
ATGCCTCGTG GAACGCTTGA AGTTATTTTG ATCAGCGCAA AAGGCCTTGA TGACAATGAT TTTCTCTCCA GCATAGATCC
TTATGTGATT CTCACATACA GGACACAGGA GCACAAGAGC ACTGTGCAAG AAGATTCTGG ATCCAAACCT CAATGGAACG
AGAGCTTTCT TTTCACTGTT TCTGACAGTA CTTCTGAACT GAATCTCAAG ATCATGGATA AAGATAACTT TACTCAGGAT
GATTCTCTTG GCGAGACAAA CATTGATTTA GGTCCACTGT TTGAAGTGGG TAGCCTTCCA GAAACTGTTC ACAAGGTTGT
GAAGGACGAA GAATATTGTG GAGAGATTAA GGTGGCTCTC ACTTTCACTC CTGAGAGAAA CGAAGAGCAG GAATACAGTG
TAGGAGATGA GAGCTATGGT GGATGGAAAG AATCAAGTGG GGAATTCTAG 

>Vigan.09G147300.01
MPRGTLEVIL ISAKGLDDND FLSSIDPYVI LTYRTQEHKS TVQEDSGSKP QWNESFLFTV SDSTSELNLK IMDKDNFTQD
DSLGETNIDL GPLFEVGSLP ETVHKVVKDE EYCGEIKVAL TFTPERNEEQ EYSVGDESYG GWKESSGEF*