VIGGS:GBrowse

Vigan.09G136400.01

Basic Information:

Name:	Vigan.09G136400.01 Multiple alignment Variant Information
Position:	Chr09:25310721..25312626 (+ strand)
Length:	1906

Functional Information:

Description:	Similar to Uncharacterized protein. [I1JKJ6, Glycine max]
GO:	Biological Process: oxidation-reduction process (GO:0055114)
	Molecular Function: iron ion binding (GO:0005506)
	Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705)
	Molecular Function: heme binding (GO:0020037)
InterPro:	Cytochrome P450 (IPR001128)
	Cytochrome P450, E-class, group I (IPR002401)
	Cytochrome P450, conserved site (IPR017972)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:878.51,139.69,1.85,3.86,2.51,5.39,7.35,0.33
Arabidopsis thaliana homolog:	AT2G45550.1

Automatic updates:

Name:	NM_001317421 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max geraniol 8-hydroxylase-like (LOC100809483), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr09:25310721..25310761 (+ strand)
Length:	41
Type:	five_prime_UTR

Position:	Chr09:25310762..25311655 (+ strand)
Length:	894
Type:	CDS

Position:	Chr09:25311729..25312334 (+ strand)
Length:	606
Type:	CDS

Position:	Chr09:25312335..25312626 (+ strand)
Length:	292
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.09G136400.01 class=Sequence position=Chr09:25310721..25312626 (+ strand)
TGAGTCTCTA ATTTTCCAGT GTCCACAAGA GAAGCAAAAG AATGGAGTAC CTTCTTCCAC TTCTTCTTCA GATCACCATA
GTGTGTGTAA CCATTCATGT ACTCATCTCA AGCTTCAAAC CAATGAAAAC CTCAAAATAC CCTCCAGGGC CTCACCCTTT
TCCCATCATA GGAAACATCT TGGAGCTTGG AAATCAGCCT CACCAAGCAC TTGCCAAACT TTCTCAAATT TATGGTCCTA
TTATGAGTCT CAAGCTTGGT AGCACTACCA CCATCGTCAT TTCATCTCCA CATGTTGCCA AAGAAGTACT GCAAAAACAT
GATCAAATCT TTTCCAACAG GACAATCCCA GATACTCTTC GAGCTCTTGA TCATCACATA CTTTCAGTGG TGTGGATGCC
ACCTTCAGCA CTGTGGAGGA CCCTTAGGAG AGCTTGTGCC ACCAAAGTGT TCTCTTCTCA GCAGCTTGAT TCCACGCAAG
TTTGTCGACA GAGGAAGGTG CAAGAATTGA TGGATTATGT CAAGGAAAGA TGTCAGAAAG GTGAAGCCTT GGATATTGGT
GAGGCTTCCT TCACAACTGT GCTTAATTCC ATATCAAACA CTTTCTTCTC AATGAATTTA GCTCACTACG CTTCTGACAA
GTCTCAAGAG TTCAAGGACA TCATTTGGGG CATCATGGAA GAAGCAGGAA GGCCTAATGT TGTTGACTTT TTTCCAATCT
TTCGCATGCT TGATCCACAG GGTGCTCGGA GAAGAATGAA TGGTTACTTT GGAAAGTTAA TTGCGTTTTT TGATGGACTC
ATAGAAGAAA GATTGCGTTT AACGGCATTA GAAAATGAAG CCAAGGCATT CAAGGACGTG TTGGATTCTG TGTTAGAACT
CATGCTTGAA GACAATTCAC AAGTGACTCG CCCTCATGTT CTGCATTTGT TTCTGGTAAG TGGTCGTGTG TGTGTAAAAT
TTTTATGTGA TGTTGTATAT TATTTTACTA ATTGGCCGCA TATGTCAGGA TTTATTTGTG GCTGGAGTAG ACACAACATC
AAGCTCTATA GAATGGGCTA TGGCTGAGTT GCTACGTAAC CCAGAAAAGC TAGAAAAAGT GAGGGAAGAG CTTCACCAAG
TTCTTGTCAA AGGTGAGCAA CTAGAAGAAT CACATATCTC AAAGCTTCCT TACCTACAAG CAGTGGTTAA GGAAACTTTC
CGCTTGCATC CACCTATCCC AATGTTAGTG CCACACAAGC CAGAAGTTGA TGTTGAACTA TGTGACTTCA TGGTACCTAA
AAGTTCCCAA ATTCTGGTTA ATGTATGGGC CATGGGTAGA GATTCAAGTA TTTGGACAAA CCCAGATGAA TTCAGACCTG
AAAGATTCTT GGAAAGTGAC CTTGATTTTA AGGGCCAAGA CTTTGAACTA ATACCCTTTG GAGCAGGAAG AAGGATCTGT
CCTGGATTGC CATTGGCTTC CAGAACTGTG CATATTGTAT TGGCCTCTCT TCTATGCAAC TATAATTGGA AGCTGAAAGA
TGGACAAAAG CCACAAGACA TGGATATATC TGAGAAATAT GGGATTACCT TGCATAAGGC ACAACCTCTC GTAGTCATTC
CAATCCAAGC ATAATACCTA GGAAGATTAT GTGTAGTGAA AATACTCTTG AAACCCTCTA TTTAGCATGC AGATGGATTA
AAATAAGTGA ATGAGTAGTA AAACCTTGTT ACTTTTATCC CTTTTACTTT TTCCTAACTT GGTTATACTA AAATTTTTTA
AATTCTAGGA TGACCTCTTC TTTCACCTTA TATTTTACTT TTCACAAAAA ACACAAGGTT AACGTATGAT AGTCGCAAAT
CTTTGATGGA AGTAGATACT AAGATTCAGA ACAGCATTTT TAACACTAAT TTTTTATTGC TACTGG

[show][hide][copy]TRANSCRIPT

>Vigan.09G136400.01
TGAGTCTCTA ATTTTCCAGT GTCCACAAGA GAAGCAAAAG AATGGAGTAC CTTCTTCCAC TTCTTCTTCA GATCACCATA
GTGTGTGTAA CCATTCATGT ACTCATCTCA AGCTTCAAAC CAATGAAAAC CTCAAAATAC CCTCCAGGGC CTCACCCTTT
TCCCATCATA GGAAACATCT TGGAGCTTGG AAATCAGCCT CACCAAGCAC TTGCCAAACT TTCTCAAATT TATGGTCCTA
TTATGAGTCT CAAGCTTGGT AGCACTACCA CCATCGTCAT TTCATCTCCA CATGTTGCCA AAGAAGTACT GCAAAAACAT
GATCAAATCT TTTCCAACAG GACAATCCCA GATACTCTTC GAGCTCTTGA TCATCACATA CTTTCAGTGG TGTGGATGCC
ACCTTCAGCA CTGTGGAGGA CCCTTAGGAG AGCTTGTGCC ACCAAAGTGT TCTCTTCTCA GCAGCTTGAT TCCACGCAAG
TTTGTCGACA GAGGAAGGTG CAAGAATTGA TGGATTATGT CAAGGAAAGA TGTCAGAAAG GTGAAGCCTT GGATATTGGT
GAGGCTTCCT TCACAACTGT GCTTAATTCC ATATCAAACA CTTTCTTCTC AATGAATTTA GCTCACTACG CTTCTGACAA
GTCTCAAGAG TTCAAGGACA TCATTTGGGG CATCATGGAA GAAGCAGGAA GGCCTAATGT TGTTGACTTT TTTCCAATCT
TTCGCATGCT TGATCCACAG GGTGCTCGGA GAAGAATGAA TGGTTACTTT GGAAAGTTAA TTGCGTTTTT TGATGGACTC
ATAGAAGAAA GATTGCGTTT AACGGCATTA GAAAATGAAG CCAAGGCATT CAAGGACGTG TTGGATTCTG TGTTAGAACT
CATGCTTGAA GACAATTCAC AAGTGACTCG CCCTCATGTT CTGCATTTGT TTCTGGATTT ATTTGTGGCT GGAGTAGACA
CAACATCAAG CTCTATAGAA TGGGCTATGG CTGAGTTGCT ACGTAACCCA GAAAAGCTAG AAAAAGTGAG GGAAGAGCTT
CACCAAGTTC TTGTCAAAGG TGAGCAACTA GAAGAATCAC ATATCTCAAA GCTTCCTTAC CTACAAGCAG TGGTTAAGGA
AACTTTCCGC TTGCATCCAC CTATCCCAAT GTTAGTGCCA CACAAGCCAG AAGTTGATGT TGAACTATGT GACTTCATGG
TACCTAAAAG TTCCCAAATT CTGGTTAATG TATGGGCCAT GGGTAGAGAT TCAAGTATTT GGACAAACCC AGATGAATTC
AGACCTGAAA GATTCTTGGA AAGTGACCTT GATTTTAAGG GCCAAGACTT TGAACTAATA CCCTTTGGAG CAGGAAGAAG
GATCTGTCCT GGATTGCCAT TGGCTTCCAG AACTGTGCAT ATTGTATTGG CCTCTCTTCT ATGCAACTAT AATTGGAAGC
TGAAAGATGG ACAAAAGCCA CAAGACATGG ATATATCTGA GAAATATGGG ATTACCTTGC ATAAGGCACA ACCTCTCGTA
GTCATTCCAA TCCAAGCATA ATACCTAGGA AGATTATGTG TAGTGAAAAT ACTCTTGAAA CCCTCTATTT AGCATGCAGA
TGGATTAAAA TAAGTGAATG AGTAGTAAAA CCTTGTTACT TTTATCCCTT TTACTTTTTC CTAACTTGGT TATACTAAAA
TTTTTTAAAT TCTAGGATGA CCTCTTCTTT CACCTTATAT TTTACTTTTC ACAAAAAACA CAAGGTTAAC GTATGATAGT
CGCAAATCTT TGATGGAAGT AGATACTAAG ATTCAGAACA GCATTTTTAA CACTAATTTT TTATTGCTAC TGG

[show][hide][copy]CDS

>Vigan.09G136400.01
ATGGAGTACC TTCTTCCACT TCTTCTTCAG ATCACCATAG TGTGTGTAAC CATTCATGTA CTCATCTCAA GCTTCAAACC
AATGAAAACC TCAAAATACC CTCCAGGGCC TCACCCTTTT CCCATCATAG GAAACATCTT GGAGCTTGGA AATCAGCCTC
ACCAAGCACT TGCCAAACTT TCTCAAATTT ATGGTCCTAT TATGAGTCTC AAGCTTGGTA GCACTACCAC CATCGTCATT
TCATCTCCAC ATGTTGCCAA AGAAGTACTG CAAAAACATG ATCAAATCTT TTCCAACAGG ACAATCCCAG ATACTCTTCG
AGCTCTTGAT CATCACATAC TTTCAGTGGT GTGGATGCCA CCTTCAGCAC TGTGGAGGAC CCTTAGGAGA GCTTGTGCCA
CCAAAGTGTT CTCTTCTCAG CAGCTTGATT CCACGCAAGT TTGTCGACAG AGGAAGGTGC AAGAATTGAT GGATTATGTC
AAGGAAAGAT GTCAGAAAGG TGAAGCCTTG GATATTGGTG AGGCTTCCTT CACAACTGTG CTTAATTCCA TATCAAACAC
TTTCTTCTCA ATGAATTTAG CTCACTACGC TTCTGACAAG TCTCAAGAGT TCAAGGACAT CATTTGGGGC ATCATGGAAG
AAGCAGGAAG GCCTAATGTT GTTGACTTTT TTCCAATCTT TCGCATGCTT GATCCACAGG GTGCTCGGAG AAGAATGAAT
GGTTACTTTG GAAAGTTAAT TGCGTTTTTT GATGGACTCA TAGAAGAAAG ATTGCGTTTA ACGGCATTAG AAAATGAAGC
CAAGGCATTC AAGGACGTGT TGGATTCTGT GTTAGAACTC ATGCTTGAAG ACAATTCACA AGTGACTCGC CCTCATGTTC
TGCATTTGTT TCTGGATTTA TTTGTGGCTG GAGTAGACAC AACATCAAGC TCTATAGAAT GGGCTATGGC TGAGTTGCTA
CGTAACCCAG AAAAGCTAGA AAAAGTGAGG GAAGAGCTTC ACCAAGTTCT TGTCAAAGGT GAGCAACTAG AAGAATCACA
TATCTCAAAG CTTCCTTACC TACAAGCAGT GGTTAAGGAA ACTTTCCGCT TGCATCCACC TATCCCAATG TTAGTGCCAC
ACAAGCCAGA AGTTGATGTT GAACTATGTG ACTTCATGGT ACCTAAAAGT TCCCAAATTC TGGTTAATGT ATGGGCCATG
GGTAGAGATT CAAGTATTTG GACAAACCCA GATGAATTCA GACCTGAAAG ATTCTTGGAA AGTGACCTTG ATTTTAAGGG
CCAAGACTTT GAACTAATAC CCTTTGGAGC AGGAAGAAGG ATCTGTCCTG GATTGCCATT GGCTTCCAGA ACTGTGCATA
TTGTATTGGC CTCTCTTCTA TGCAACTATA ATTGGAAGCT GAAAGATGGA CAAAAGCCAC AAGACATGGA TATATCTGAG
AAATATGGGA TTACCTTGCA TAAGGCACAA CCTCTCGTAG TCATTCCAAT CCAAGCATAA

[show][hide][copy]PROTEIN

>Vigan.09G136400.01
MEYLLPLLLQ ITIVCVTIHV LISSFKPMKT SKYPPGPHPF PIIGNILELG NQPHQALAKL SQIYGPIMSL KLGSTTTIVI
SSPHVAKEVL QKHDQIFSNR TIPDTLRALD HHILSVVWMP PSALWRTLRR ACATKVFSSQ QLDSTQVCRQ RKVQELMDYV
KERCQKGEAL DIGEASFTTV LNSISNTFFS MNLAHYASDK SQEFKDIIWG IMEEAGRPNV VDFFPIFRML DPQGARRRMN
GYFGKLIAFF DGLIEERLRL TALENEAKAF KDVLDSVLEL MLEDNSQVTR PHVLHLFLDL FVAGVDTTSS SIEWAMAELL
RNPEKLEKVR EELHQVLVKG EQLEESHISK LPYLQAVVKE TFRLHPPIPM LVPHKPEVDV ELCDFMVPKS SQILVNVWAM
GRDSSIWTNP DEFRPERFLE SDLDFKGQDF ELIPFGAGRR ICPGLPLASR TVHIVLASLL CNYNWKLKDG QKPQDMDISE
KYGITLHKAQ PLVVIPIQA*