GBrowse Details

Vigan.09G132800.01

Basic Information:
Name: Vigan.09G132800.01
Multiple alignment
Variant Information
Position: Chr09:24514734..24519373 (- strand)
Length: 4640
Functional Information:
Description: Similar to NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like. [XP_004510934.1, Cicer arietinum]
InterPro: CHCH (IPR010625)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.33,9.26,22.96,13.23,43.46,43.88,40.19,21.42
Arabidopsis thaliana homolog: AT5G18800.1
Automatic updates:
Name: NM_001249329 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527451 (LOC100527451), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250951 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527561 (LOC100527561), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:24514734..24515252 (- strand)
Length: 519
Type: three_prime_UTR
Position: Chr09:24515253..24515385 (- strand)
Length: 133
Type: CDS
Position: Chr09:24518895..24519082 (- strand)
Length: 188
Type: CDS
Position: Chr09:24519083..24519373 (- strand)
Length: 291
Type: five_prime_UTR

>Vigan.09G132800.01 class=Sequence position=Chr09:24514734..24519373 (- strand)
CTTATATGTT ACCAGTAGTA ATATAATGCT ACTGTGGAAT TAATTTTCAT ATTAACAGTA AATTGGTAGC TTATTTCTTA
ACCAAATTAC GAGAGCATCC TTTTGATCTT GTCCACTTCG CTTCTTCCCA ACAACCACGG GTAAGGGCAA TGTCGTAAAT
GCCTTTCCGT TCTCCATTTT CTATTTCCCT CATTTTCCCA GTAATTTACT TTCATTTTTT CAGGAACTTA ACGACGCTGA
TCGAATTGCG CTTTCTCTTT TTTGTTGTGG CTAACAAGTA TTGAACTGCA CATGGCGAGC GCAGTAGATT CCTCGGGAAA
TCCAATCCCA TCGTCGTCGG TGTTGATGGC ATCATCGAAG CACATTGGGA TCCGGTGCCA CTCTGAGAAC TTGGATTTTC
TGAAGTGCAA GAAGAAGGAT CCTAACCCTG AAAAGTGTCT TGACAAGGGT CGCGATGTTA CCCGCTGTGT CCTTGGACTG
TGAGTTCTTC TTGTCTCTTC TGATTTTTAT CCCTGTTTGG TAGGTTTGAA AATTTGGAAT AGGTTTTGTT GATTTTTTTT
CAGATTTTTA AGTGGTGAGT GATTTCTTGA TTCTATGTTA TTTTGGATTA TATGGCCACT TCTTGCCACT TCTTGATTTC
TTGATTCTAT GTTATTTCTC ATAATAATCA TTTTGTAACT TCCTCCTTGT CCATATTAAA ATTCAGCAAT TTCCTGACTT
ATTTGCTGAA CTACTTCAGG AATTACATCT CTGAAAAACA ACAGAAATAC AATGTTGTGC ATCTTTAATG TGTTAATGTT
ATATTCGTAA CATACAAGGA CAAACCTTTC ATGTGAAAAC TGATAGAACA CTGTTGGTTT TTTTTGGCTG CCATTTTCAG
TTTTTGGTAA CATCCCATCT CACCTGATTG ACAAAACCAA CATAGAATCT GCACCAGACA GGTGTCGGAG AACGGACGGC
AAGAAGTGGC AATGCAAGAG TGCTGTTGGT CAGAAGTACT GTGCCACACA CATGCAAAGA GGTGCTAAAA AGTTTTATAA
CATAGAATAA AAGGAAGAAC AGCACTCTTG CATTGCCACT TCTTGCCGTC CGTTCTCCGA CACCTGTCTG GTGCAGATTC
TATGTTATTT TGGATTATAT GGACACTTTG TGATGTTGAG AATCAATTTC TTTGTGTTAT TTATGTTGTC CATTCGCTAC
ATTTAGTCTG CAATTGAACC TCTAATAGGA TTGTCTATGC AACAGGATTG AATTTTTGTG CCAACCATGT GATCCAATCC
AGTTTATAAT TATTAGACCA CTCACATATA TCTAATCACA CCGTTGAGAT GTCTCTTAAG AAGGATATGT TCCAACACGG
ACTAGAGATA TATGCTCTAT CAGAAAAAGG ATACGGAGAA AAGGTAAACA AAAAAAGATT AAAGGAAAAC TGAACTGTAT
GTTATTTCAG TTAATGAAAA CAGAGAATAC AAGCTAAGTA TATATAGGCT CTAAAGCCTT CTAAATTGAT TACAGAAAAC
AAAAAACTAA CATCCGGTTA AATAACTGAA TGATTTTACA TCAATATATG CAATTTCAGA AGAGTTAGGA AGTCAGTGAG
ACTTCCCAGC ACACCAACAT GAACAAAAAT TCATAGTTTT ATTATATGAA TGGAATTTAC AAAGAGCCAT TACAATTTTC
AGCACAAGGA TTTGGATGAC CAAATCTAGC ATGCCATAAG TTGATAGATT CAGAAACACT AGTTACAACA GAGTCAGGGT
TAACAACTAT ACTGGTAGTA GAGTAAGACT GAGGAATCTT TGACTTGGTT GGAAACGAAC TGGCTTGAAT GCTGTGATTT
AGGAAGGAGT GTAGATCGTC AATTCCAACG ATGCCCCAAG AAGGACTTCA TTGGTGGCCT GAGATTTAAC AGTACAATAG
TGAGGAAGCA AACTCAAAAT AAACACCTTT ATCAAGAGCA AACTTACTCA CATTGAGCAA ATTTTTGGTA ATTGAGGGTA
CATGCAATAA ATTGTGTAAG TAGAGAGAGA GATTAGGATT CGTAGGATTC TTTAAACAAG AACTGGAACC AAGAACTTTC
AGATCTTCAC CATTACCAAT ATAGATTTGA TCAGTCTCTT CAAAGTAATT AAATTGATGA TTATTCTAGA TTCACCTGTC
ATATGAAAGG AGACTCCTGA ATATGATATC CAAGTGGAAT TTCCATTTTC TTGTGCTGAA GATTCAGCCA CCATAGCACT
TGGAATGCCT TGATAGGATT GATTTTGAGA TCTTGCAGTA GCAGGATTGA CCCATGTGTT TGATCGAGGT GTTGGCTTAG
ACTGAATAGC AGAATACTGC AGTGGCTGAA AGTTGTCAAA TCTGTAGCTA CGACCACAAC CACTCCGGTC ACAAGCAGCC
TGATCAGAAA AGGCTGGGTG ATCAAAATTC CTTTGAATAG TGGTACTGCA TATTGCAATC TTGAAGAAGG ATTTTCATAG
GATTGAGAGT AGTTTTCCGA TGGGGGAAAT AATTTCCTCT GAAAGCAATT ACTGCTCGAT TCATGAGCAA GGAGAAAAGA
CTCATCATCT GTGATTGGAG GTGTTTCAAA CGTACTTTCA ATTGACAGAA ATGATGGGAG CATATTTTTG AGGAAGACCC
TCAAGAATGA CATCACTGTA TTCATCATGC TTGACAGGAC AATCAATACC AGCAAGTTCA TCAGCAATGG ACTTAATTTG
TCCCAAGAAT TCACATATAG TTTTGTTTTC AAGGGAGTTG GCTTGAAGAT TTGTGCGGAG CTGCCTAGCA TGCACCTTGA
TTTTTGGAAA GAAATGGAAC CTTCCTCGTA ATCCAAGGAC TATTCTTGAA TCTAACTAAT GTATGTCAAA AATTCGGCCA
TCTTCTTTCT CATTGCATAG CATTACCCCC ATTGGAACTG TCAAAATTCT ATCAAAAGGT ACTGCTCGAG CTCAAGAGAA
AATTTTAGCA CAGGTATAAG ATTTGCAATA CTGTATGGAA TCTTGGAATT GAGTGCTGGG AAATTTTGCA GTTAAAGGCT
AACACGAGTG TTAGAAGTAG GAATATTTTA GGACATTAGA GCTTTAAAGT TTATTTTCCA AGTAGCCTAC ATACTTGGTA
AGTTGGTATG GCTAGGTTCT CAATGCATCT TAGGCAGTAG TAGTATAGTA ATTGTTCTCT AGTAATTTCT TTCGGCACAA
ATTTTCTCTG TATGCTCTTG AATATAAACA AGTCCATTCT GCTGGGTGTA AAATGTATTT AAGTTCAAAA ACTATTTGTT
TCTCTGTTCT CATGATGAGG ATGAAATTAA GTAGTAAAGA TGAGAGTGCT GCTGTGGATG AGTGAACATA GTATACTGTG
ATGTCATCAC CAGCATCAGT GTGCACTTGA AACAGATAAA CAATGCATTA GACAAGATTT GGAGTAAAGC ATTGGAGAGA
AAGTTTGTAT AGAACATATC CTGGGGAAAT AGTTCGGTCT ATCCTTAGGT GATTTGGACT TCTGTAAAGA AGACCTATAG
AAGCTTTAGT AAGGAGAGTA GATAAGATGG AATAGGAAGT ATAGCCGTAC CATGAATTAG TATTAGAGCA TGGATGACTG
TCATTTTTTA CATTACGTGA AAGTCCTTTG TGGTCGTTCC ATATCAAATA ATTATGGAGG TCCATCATCT ATGTTTATTG
CTGATTCTAT ACCCTTTTTT CATCAAATTC ATGGATTTGT TCATAATTAA TGCTTTGATA ATTTTTAAAA ATTTTAACAT
TTATTGACTT GGTAATGCCA GTAATAACAG TAATAAAATA TGTAAAACAT GTTTCAAAGA TGAATTATCA AACTTAGAAA
TAGATGGATG TAGCTCTTTG CTTCTAGAGG TTGTATTAGT GCTAGAACTT GTATTTCTGA ATTATCTTGT CAATTGTTAC
ATTACACTAA AGTCTTTTAT GGTCGGTTCA CGTATCAAGG TGATGATGAT GGAATTCTTT TTCTGCAGTT TGAAAGATCT
TCATCAGAAG TGCACAAAGG AGATGGATGA TTATGTTGGC TGCATGTACT ACCATACAAA TGAATTTGAC TTGTGTCGCA
AAGAGCAGCA AGCATTTGAG AAAAAGTGTT CTTTGGAATG AAACTATCCA CTGTTGTCGA AAATAATAAT GAAGGCGATT
TGGAGTGAGA CAATGCATTT GTTTTCCATA AAATCATTAA TCTTTTTTGC TTTTACGACA GTGTGGAATA TTTGTCATTG
ACAATGTTCG CCCTCTAAAT TTTTCTAGAG AAATGCATGC AACCAGTACA ATAACAAACT CTTCAAACAT AACTCACAAG
AATTATTTTC TGTTGGAACA TGGTTGTAAT TTGGTTTCTG TGCTCAAAAT GCATATTTCT GATGCCTTCG TTGTTCCTGA
CAACTGAAGT AGGAAGTAAA ACACTAAGCA CCCAACAAGT AGCACACCAA AATCTGGCAA TTGTATGATT TTCATCTATC
AAAATTCACT TATGCTAATT GGACGAGTGA AGTTTTTTCT TATTTACAAC GTTGTCCCTG TATCCTAATT TCATCAAATA
TTCAATGAGA TTGTGATGAG ATAAACTGGG TATAACATGA CAATGAGTAA AGAAATTGTA TAAATCCATG TTCATCTAAA

>Vigan.09G132800.01
CTTATATGTT ACCAGTAGTA ATATAATGCT ACTGTGGAAT TAATTTTCAT ATTAACAGTA AATTGGTAGC TTATTTCTTA
ACCAAATTAC GAGAGCATCC TTTTGATCTT GTCCACTTCG CTTCTTCCCA ACAACCACGG GTAAGGGCAA TGTCGTAAAT
GCCTTTCCGT TCTCCATTTT CTATTTCCCT CATTTTCCCA GTAATTTACT TTCATTTTTT CAGGAACTTA ACGACGCTGA
TCGAATTGCG CTTTCTCTTT TTTGTTGTGG CTAACAAGTA TTGAACTGCA CATGGCGAGC GCAGTAGATT CCTCGGGAAA
TCCAATCCCA TCGTCGTCGG TGTTGATGGC ATCATCGAAG CACATTGGGA TCCGGTGCCA CTCTGAGAAC TTGGATTTTC
TGAAGTGCAA GAAGAAGGAT CCTAACCCTG AAAAGTGTCT TGACAAGGGT CGCGATGTTA CCCGCTGTGT CCTTGGACTT
TTGAAAGATC TTCATCAGAA GTGCACAAAG GAGATGGATG ATTATGTTGG CTGCATGTAC TACCATACAA ATGAATTTGA
CTTGTGTCGC AAAGAGCAGC AAGCATTTGA GAAAAAGTGT TCTTTGGAAT GAAACTATCC ACTGTTGTCG AAAATAATAA
TGAAGGCGAT TTGGAGTGAG ACAATGCATT TGTTTTCCAT AAAATCATTA ATCTTTTTTG CTTTTACGAC AGTGTGGAAT
ATTTGTCATT GACAATGTTC GCCCTCTAAA TTTTTCTAGA GAAATGCATG CAACCAGTAC AATAACAAAC TCTTCAAACA
TAACTCACAA GAATTATTTT CTGTTGGAAC ATGGTTGTAA TTTGGTTTCT GTGCTCAAAA TGCATATTTC TGATGCCTTC
GTTGTTCCTG ACAACTGAAG TAGGAAGTAA AACACTAAGC ACCCAACAAG TAGCACACCA AAATCTGGCA ATTGTATGAT
TTTCATCTAT CAAAATTCAC TTATGCTAAT TGGACGAGTG AAGTTTTTTC TTATTTACAA CGTTGTCCCT GTATCCTAAT
TTCATCAAAT ATTCAATGAG ATTGTGATGA GATAAACTGG GTATAACATG ACAATGAGTA AAGAAATTGT ATAAATCCAT
GTTCATCTAA A

>Vigan.09G132800.01
ATGGCGAGCG CAGTAGATTC CTCGGGAAAT CCAATCCCAT CGTCGTCGGT GTTGATGGCA TCATCGAAGC ACATTGGGAT
CCGGTGCCAC TCTGAGAACT TGGATTTTCT GAAGTGCAAG AAGAAGGATC CTAACCCTGA AAAGTGTCTT GACAAGGGTC
GCGATGTTAC CCGCTGTGTC CTTGGACTTT TGAAAGATCT TCATCAGAAG TGCACAAAGG AGATGGATGA TTATGTTGGC
TGCATGTACT ACCATACAAA TGAATTTGAC TTGTGTCGCA AAGAGCAGCA AGCATTTGAG AAAAAGTGTT CTTTGGAATG
A

>Vigan.09G132800.01
MASAVDSSGN PIPSSSVLMA SSKHIGIRCH SENLDFLKCK KKDPNPEKCL DKGRDVTRCV LGLLKDLHQK CTKEMDDYVG
CMYYHTNEFD LCRKEQQAFE KKCSLE*