VIGGS:GBrowse

Vigan.09G127500.01

Basic Information:

Name:	Vigan.09G127500.01 Multiple alignment Variant Information
Position:	Chr09:22959898..22962233 (- strand)
Length:	2336

Functional Information:

Description:	Similar to 40S ribosomal protein S13. [P62302, Glycine max]
GO:	Biological Process: translation (GO:0006412)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: ribosome (GO:0005840)
	Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro:	Ribosomal protein S15 (IPR000589)
	S15/NS1, RNA-binding (IPR009068)
	Ribosomal protein S13/S15, N-terminal (IPR012606)
	Ribosomal protein S15P (IPR023029)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:184.90,340.79,162.22,89.45,277.88,326.09,225.18,102.35
Arabidopsis thaliana homolog:	AT4G00100.1

Automatic updates:

Name:	NM_001250300 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max ribosomal protein S13 (RPS13), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001354116 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max 40S ribosomal protein S13 (LOC100782821), mRNA.
PubMed ID:	18927222 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001354117 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max 40S ribosomal protein S13 (LOC100781750), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr09:22959898..22960263 (- strand)
Length:	366
Type:	three_prime_UTR

Position:	Chr09:22960264..22960297 (- strand)
Length:	34
Type:	CDS

Position:	Chr09:22960896..22961082 (- strand)
Length:	187
Type:	CDS

Position:	Chr09:22961166..22961304 (- strand)
Length:	139
Type:	CDS

Position:	Chr09:22961902..22961974 (- strand)
Length:	73
Type:	CDS

Position:	Chr09:22962098..22962120 (- strand)
Length:	23
Type:	CDS

Position:	Chr09:22962121..22962233 (- strand)
Length:	113
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.09G127500.01 class=Sequence position=Chr09:22959898..22962233 (- strand)
CTAGTTTTCA CTACCTTCAT ATTCTCAGGG TTTCTCCTCC TTCATTCTAG TCGTTCGGTG CAGGCGCAGC AGACAGACAG
AGAGAGTGTC GTCCTTCTTC AAACGCGGTC ACCATGGGGC GTATGCACAG TCGCGGGTAT GTTCCCATGG TCACGTTTTC
ACGTTAGAGA ATACGGAGAA AACAGTTCTT TTCGTTTTCC TTTTATCTAA CGTTGTTGCT GTTCTTATGT GTTGGTTCCC
TGAATGTTTT TGTTTTCAGT AAGGGTATCT CCAGTTCGGC TCTTCCATAT AAGAGGACCC CACCTAGCTG GTTGAAGATT
TCGTCGCAGG ATGTAAGCAA TGAACACCCT ATTTGTTTTC TTTCTTGCAC TTTGGCCTGA ATTTGTTTTA ATGCTATCCT
TCTTCTTAGA TGCTTGAAAA CTGTGACTGT TAACTGGAAA GAAATCTTTT TGTAATGTGC GTATGTTGTT GGGTATCTTA
CTTCATTATG CATGCATATA GTTAGGTTTA ATGATTCTTC TTTTTCAATT GGAAACCCGT TGTAATTCTA TCTCAAGCAT
TTGATATGTG CAAGGTCGTA GGTTGTCGAT TTCGTTAGAG TTTTGTTGCG ATCTGTGATA TTAGGGAAGT TTGTGTAAAG
AAAAATGTTG AAACCTTGTT ATTTTCAGTT ATTTTGAGAC AATGTTCGAA CTTGTTAAAA CAAAAAATTG TAAGACATTG
GTGAACCCTT GTTGTCGTAT ATAATTGTAA AATAATATTG CTAGAATTAA AATTGCTGTA TTAATGATGT TAGGGCTCTT
ATAAACACAT TGGTGTTAAC CTTCTGCTAT TCTAATAAAG TTATGAATAT GGTTAAAGAG TTCTGATTGG TATACTTTGA
ATGTTTGTTG CTGTGTTAAC CATACGGTGT TGTACTTATG ACTTCACAGG TGGAGGAAAA CATCTGCAAG TTTGCCAAGA
AAGGTCTCAC TCCATCCCAA ATTGGTGTTA TTCTTCGTGA CTCTCATGGA ATTGCTCAGG TTAGGAGTGT CACTGGAAGC
AAGATTCTAC GTATATTGAA AGCCCATGGT ATTACCTTTT CCATCATTCT AGGCTTATTG TACTGTGTGG CATTTGAAAT
TTTACAATAG GAATGTCATT GTCATTTGTA GGGCTTGCTC CTGAAATTCC TGAGGATTTG TATCACTTGA TCAAAAAGGC
TGTCTCCATT AGGAAGCACT TGGAGAGGAA TAGGAAGGAC AAGGATTCTA AATTCAGGTT AATTTTGGTT GAGAGTAGGA
TTCACCGCCT TGCCCGTTAC TACAAGAAGA CTAAGAAGCT CCCACCCGTG TGGAAATAGT AAGTCTTCAA TTTGTATACT
CTATAAAGGC ATAAACTTTT GCGTTTGATA ATGGTTGATT TATGATCTAA TTTTTTTCTT TTTTATATAG TTAGACACTA
GGCAAGGTGC ACTTAATCAG TAAAACTTAA ACCTACCATT CCTGTTATTC CTTTCCTTTT GTAAAAGGCC TAGTTTTGAT
AAATGGTTGT TTTAAGCTTT TCTTCATTTT CAGTCTCAAC TTGTGGACCA ACACTATTTG CTATGTGTTT CTTAATAAGT
TGATCACAAT TGATTTGTTT AAGTATTTTA TCTATAGAAT ATTCCGAATG CATGATGATT TCAATTGTTA ACAAGGATTG
CTGGCTCTGC ATTATTGGTC AAATTTTCCT GATAGATTCA ACAAGTGCAT TTTCATTCTG AAACACCATT GCTCTGATCG
AAAGAGTTTT TCTGCAGTTT GTCACTGTAA ATCTGTCATC AATTGCGGAT GGTGTTGTTT CACCTTGATT CTATGTTCTT
ATTACCTTAT TTACTTGCTT TTATCTGCAG CTATATGATG TCACAGTGCT TCCCTGTTGT TAGTGCTAAT ATTTGTTTGG
TTTATCTTAA TTGCAGTGAA TCTACAACTG CCAGCACCCT TGTGGCTTAG AGTGAAATGT TTTTAAGATA TGATAGAATT
CTTCAATCAA TGTACTTTTT GATAAGCAAA TTTATTTCTT TGACGTGATT TTCGAGTTTT CAATTCTTGT TAAAACACTT
ATCCAATGGT AGTTTTGATG ATGGATTTTT GTTTTTATTA TTGATTACCG AATTGCCGTT TTGGTTTCTA TGTGGTAGTA
ATTGAATCTG AGCATCGAAT TGATGTTACT TGATATCGTT GGAGGAATAG CATTGACTAA GATAATATAA CCTCGTCCTT
GGAAGAATAA TCTTTCGATT TTGATCTGTA TAGTTTGCAT TTATCAACAA TGCATTCTGT TTTAAAGGAT TAACATTTTT
TTCCTTGAGT ATGGAA

[show][hide][copy]TRANSCRIPT

>Vigan.09G127500.01
CTAGTTTTCA CTACCTTCAT ATTCTCAGGG TTTCTCCTCC TTCATTCTAG TCGTTCGGTG CAGGCGCAGC AGACAGACAG
AGAGAGTGTC GTCCTTCTTC AAACGCGGTC ACCATGGGGC GTATGCACAG TCGCGGTAAG GGTATCTCCA GTTCGGCTCT
TCCATATAAG AGGACCCCAC CTAGCTGGTT GAAGATTTCG TCGCAGGATG TGGAGGAAAA CATCTGCAAG TTTGCCAAGA
AAGGTCTCAC TCCATCCCAA ATTGGTGTTA TTCTTCGTGA CTCTCATGGA ATTGCTCAGG TTAGGAGTGT CACTGGAAGC
AAGATTCTAC GTATATTGAA AGCCCATGGG CTTGCTCCTG AAATTCCTGA GGATTTGTAT CACTTGATCA AAAAGGCTGT
CTCCATTAGG AAGCACTTGG AGAGGAATAG GAAGGACAAG GATTCTAAAT TCAGGTTAAT TTTGGTTGAG AGTAGGATTC
ACCGCCTTGC CCGTTACTAC AAGAAGACTA AGAAGCTCCC ACCCGTGTGG AAATATGAAT CTACAACTGC CAGCACCCTT
GTGGCTTAGA GTGAAATGTT TTTAAGATAT GATAGAATTC TTCAATCAAT GTACTTTTTG ATAAGCAAAT TTATTTCTTT
GACGTGATTT TCGAGTTTTC AATTCTTGTT AAAACACTTA TCCAATGGTA GTTTTGATGA TGGATTTTTG TTTTTATTAT
TGATTACCGA ATTGCCGTTT TGGTTTCTAT GTGGTAGTAA TTGAATCTGA GCATCGAATT GATGTTACTT GATATCGTTG
GAGGAATAGC ATTGACTAAG ATAATATAAC CTCGTCCTTG GAAGAATAAT CTTTCGATTT TGATCTGTAT AGTTTGCATT
TATCAACAAT GCATTCTGTT TTAAAGGATT AACATTTTTT TCCTTGAGTA TGGAA

[show][hide][copy]CDS

>Vigan.09G127500.01
ATGGGGCGTA TGCACAGTCG CGGTAAGGGT ATCTCCAGTT CGGCTCTTCC ATATAAGAGG ACCCCACCTA GCTGGTTGAA
GATTTCGTCG CAGGATGTGG AGGAAAACAT CTGCAAGTTT GCCAAGAAAG GTCTCACTCC ATCCCAAATT GGTGTTATTC
TTCGTGACTC TCATGGAATT GCTCAGGTTA GGAGTGTCAC TGGAAGCAAG ATTCTACGTA TATTGAAAGC CCATGGGCTT
GCTCCTGAAA TTCCTGAGGA TTTGTATCAC TTGATCAAAA AGGCTGTCTC CATTAGGAAG CACTTGGAGA GGAATAGGAA
GGACAAGGAT TCTAAATTCA GGTTAATTTT GGTTGAGAGT AGGATTCACC GCCTTGCCCG TTACTACAAG AAGACTAAGA
AGCTCCCACC CGTGTGGAAA TATGAATCTA CAACTGCCAG CACCCTTGTG GCTTAG

[show][hide][copy]PROTEIN

>Vigan.09G127500.01
MGRMHSRGKG ISSSALPYKR TPPSWLKISS QDVEENICKF AKKGLTPSQI GVILRDSHGI AQVRSVTGSK ILRILKAHGL
APEIPEDLYH LIKKAVSIRK HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A*