GBrowse Details

Vigan.09G116500.01

Basic Information:
Name: Vigan.09G116500.01
Multiple alignment
Variant Information
Position: Chr09:18541744..18545540 (+ strand)
Length: 3797
Functional Information:
Description: Similar to Uncharacterized protein. [K7K3P5, Glycine max]
GO: Molecular Function: structural molecule activity (GO:0005198)
InterPro: MSP domain (IPR000535)
PapD-like (IPR008962)
Vesicle-associated membrane protein (IPR016763)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:31.02,19.38,41.65,49.26,39.36,38.25,49.98,54.50
Arabidopsis thaliana homolog: AT2G45140.1
Structure :
Position: Chr09:18541744..18541852 (+ strand)
Length: 109
Type: five_prime_UTR
Position: Chr09:18541853..18541904 (+ strand)
Length: 52
Type: CDS
Position: Chr09:18542045..18542115 (+ strand)
Length: 71
Type: CDS
Position: Chr09:18542277..18542358 (+ strand)
Length: 82
Type: CDS
Position: Chr09:18542792..18542907 (+ strand)
Length: 116
Type: CDS
Position: Chr09:18543007..18543171 (+ strand)
Length: 165
Type: CDS
Position: Chr09:18543255..18543305 (+ strand)
Length: 51
Type: CDS
Position: Chr09:18543864..18543941 (+ strand)
Length: 78
Type: CDS
Position: Chr09:18545079..18545195 (+ strand)
Length: 117
Type: CDS
Position: Chr09:18545196..18545540 (+ strand)
Length: 345
Type: three_prime_UTR

>Vigan.09G116500.01 class=Sequence position=Chr09:18541744..18545540 (+ strand)
AAAGTGTTGC ACGTTTTTGC TTTCCAAGTT GTGACTCTCT CTACCTACAG CAACCGTTTT CGCTTGCCGG AAACAGACAT
TGATCTCTCT CTCCACCGAT CCCTCCGCCA TGAGTTCCAC CGAGATCCTC CACATACAGC CCCAGGAGCT TCAGTTCCCC
TGTGAGCCTG TTCAGAATCA ATAAAAAAAT TTAACTTTCC TCTGCAAATT AAACCTTTTT TCTTTTCCTT TGGTTTCTGC
CTCTGGGTCT TCTTCTAATT TTTCTTTTTA AATTTTCTGC GTTTTGGGTT TGTGAAAATA GTTGAATTGA GGAAGCAGAT
CTCATGCTCT TTACAGTTGT CTAACAGGAC AGACAACTAT GTGGCTTTCA AGGTTCCAGT TTTACTCAGT CTTCCTTTTC
TGACTTACTT CTGACGTTTA ATTTTTTTTA ATTAATTTAT ATCTATTTTA AGGGTAGTAT TTTTCTTTTC TTTTTAATTT
TGTGTTGTGG AGAGTTTTAA TTTTGATTTG GGGTGAAATT CGTGGTTTTG CAGGTTAAGA CGACAAATCC TAAGAAATAC
TGTGTTAGAC CTAACACTGG AGTTGTGATG CCTAGGTCTA CATGTGATGT CATAGGTTTC TTTTTCTCAC TCTGTCTTCC
CTTGCTCCTT TTCAGTCTCC TCCCTCTTCC ACACAAAAGC ACAATTGCAT ACTAAGACAA TCTTCCTTTG CTTGATTTGG
TCTGCCACTT GGTTATTTAT GTTTAACTAT TTTAAATTTG TAATTTTGTT GGTTAAGTTT TGCTATACCC TATTGATTTA
TTGATTTGTG TTTGTTTTTT CTTTTCATAT TTCTGTGCCA TTTTATTTTG AATAAACAAT ATTTGCACTG ACAATGCGAA
CCAATCACTA ATTCCATGGT ATGCTTGTTT GACTTTCATA ATAACTTTCT TGAAAATCAT ATCAATGATG ATTTGAACTG
ATCAATAGTA TAAAATCTTT TACAGTGTTG AATCCACACT GTTTAGTAAC TATTCTATGT ATTGACTGTT AGTGTCTTAT
GTTTTCAGTA ACAATGCAAG CTCAAAAGGA GGCACCTCCA GAGATGCAAT GCAAGGATAA GTTTCTTCTT CAGAGTGTAG
TTGCAAGCCC TGGTGCAACC ACAAAAGATA TCACTCCAGA AATGGTATCC ATTTGACAAA TTACACTCCT TTTCTTGATA
GAATAACTAC ATGTGTGTGA CATGGTGCTT AATTTGATGG TTTTCTTGTG CTCATTTATA TAGTTCAATA AAGAATCTGG
TCATGATGTT GAAGAGTGCA AGTTGAGAGT TGTTTATGTT GCTCCTCCTC AACCACCATC CCCTGTTAGA GAAGGATCTG
ATGAAGATTC GTCACCTCGA GCATCTGTGT CTGAAAATGG GCATTCAAAT GCTTTGGACT TTAATGCGGT ATGTAACCAG
TGGATTTGCT TATATTTTCA AACAATTTTT CGTCTTTTTG GTTAACTAAT TGTTGTGGCC ATTTTCGGTA GGCTTCAAAA
GCTTTCAATG AGCGGGGTGA GCATCAGGAC ACTTCTTTTG AGGTAACATG CAATTATAAT TTTCTTCTTC AATTACAAAG
AAAAGTGGTT AACATCATAA TTTCTATCAT TCTGTTGTGG GGCACATAAT TTTTTTTAAT TTGGGAGAAG CTAATGCTTT
TTGTTGCCTG TTACCCCAAC CCAAACGTGC CTGCAATAAC ATCTCCTTTT TATCACGAAC CAGAAGGACC AATTTGCATG
CTATTGTAGA AATATGTCAT CAAATATAAT GATAACTCTA ATGTAGTTTT TAGATGTTGG AAGTACCTTT CTAATGTTTT
TAAATATATG AGCTCTGGTG TCTATGCATT GGTTTATTAT TTATATCCCG GTTTTGACCT TTTAACAGTA AGTTTTTTCA
TAGCCTGGTG GTGCTGTAAT TTTCTCTGGG TTTCTAAATT CTCCTCATGA TAAACTTTTT GAAGTGGATT GATTCAAGTA
ATTTATTTGC TTTGATAACC ATATTATTAT TGAAGAAGTT ATCTTAATTG TCTCAAAGAA GAGCTTTGGA TATATGAATA
AAAGAAAACC GGTGTTCATT TTGAACTTCG TTTGTTTCAG GCAAGAACTC ATATTTCAAA GGTAACTGAG GAGAGGAATT
ATGTTATTGA GCAAAACAAA AGACTTCAGC AAGAACTGGT ATGGAATTCA TTCTGAAAAT ACATCTAAAT GTATTACAGC
CTGTATATAC ATGTATTATG TTGAATGTTT CTATTCCCTT TAGATGATGA TCTTGGTGGT ATCCTATGAT GGCACATCGT
TTCAATGCTT CTAATTGTTT TCTTTTGCTA TGTTATTCAA TTATTAGGAT GAACTAAATT CAATATCTAT CTCAGTGTGT
CTGAATTTAC GATTCGGGAA AGATTAGTTA ATCTTAGCCA TGTGTTCATG AATCCAAGCG TGTCAGAATA TTTCAAAATC
CTTGTCTGAT TTTGAGTGAC TAATGATCGG GAAAATGGAA GCATGGGAAC CAAAAGGAAC ATGTTCCATT TCCTGTTTCT
AAACTAATTT CGTTTTCATC AAAATAAATA GAAAACTCTG TATAACTGAT CGAAAATATG CTACTGTGTT ATTCTTCAAA
GCTTCTGGTT CAGTTTCTTG TTAGGCTTAG TTCTATTATT CATTATGCTA AACTGAGTAT ATCAGCATGG TTGTTGGATA
GTTTCAAAAT CAACCCTGAA AAATTAATGA ACATCCTTAA ATAATCCACC TCCGTAATCA ATCTCCTCAC ATTTTGCTTA
TAGTTTTCTA TGCCTAACTA TTTTATCACC TTCCATAGAA ATAGAAAGGA GAATTATTTA TATGACTTGT TGTATTCCTA
TAGATGACTC TTCCCATTGA AATCATAGTA TTAAGAAGTA AATTTTAAGT CTAACTTAAC TTCATAAAAC CGGCTTGTAA
AATGAAGCTT GTATTCACTT ATATGCTATG AAATCGCATT ATCTCTTGTC GATTGAGATC TGCAATATAT AGCAAGAAGG
AAGACTTATT CATTGCATAA TATGTTTTGA ATCTTTTGGT TGCTAAGAAA CCATGATACC TGTTAGGTCC TATACGTTCT
TGATTCTATC TATATTCTTC TCTTCTGAAC ACTGCAGAGT TCAGATTCTT TATCACTTTT ATACTTGTAT TATTAGTAGT
GCAGTCAAGT TGTAGTCATC ACTTGGCATG ATGGTTAAAT GTTTGATGAA GTCAATAATG ACATCATAGA ACAATTATCT
ACATTTTATA TAATCATGAA AAAACTATGA ACTGGTTTGG AATGTTCCAT GGCAGGAGCT TTTGAGGCGC CAAACCGGCA
GTCGGCGCAG CGGCGGTGGC ATACCATTCA TGTACGTAGT TGTTGTTGGC ATAATTGGCA TCATTCTGGG TTTCCTGTTG
AAGAGGACGT GACCTGAGTG ATTGGTAGCA ATGAGATCAA TTGTAGAAAG CAACAAGAAA TATGTGAAAT GTGGAAAAAC
CAAACCAAAA ATTGTTGTCT TATTGTCGTG CATTGCTCCT ACAAATTTGG AATGTGTGGT CAAAAGTAGG TACTTGTTCT
GAGCCATAGC AATCATAGAC AGTGAACAGA GTTGTATCAT GGGAACTGTA ATTGGTATCT GATATGCTAC ATGTGATTAA
TTCTTTAGCA CCATCATAGT GTCCAATATT TTGAACATAA AAAGTCTTCA TGGTAACACA AAATCATTCT TTACAAGCTT
CTTGAAAATG AAAATTTATT TTGTATTTTT GTTAAAA

>Vigan.09G116500.01
AAAGTGTTGC ACGTTTTTGC TTTCCAAGTT GTGACTCTCT CTACCTACAG CAACCGTTTT CGCTTGCCGG AAACAGACAT
TGATCTCTCT CTCCACCGAT CCCTCCGCCA TGAGTTCCAC CGAGATCCTC CACATACAGC CCCAGGAGCT TCAGTTCCCC
TTTGAATTGA GGAAGCAGAT CTCATGCTCT TTACAGTTGT CTAACAGGAC AGACAACTAT GTGGCTTTCA AGGTTAAGAC
GACAAATCCT AAGAAATACT GTGTTAGACC TAACACTGGA GTTGTGATGC CTAGGTCTAC ATGTGATGTC ATAGTAACAA
TGCAAGCTCA AAAGGAGGCA CCTCCAGAGA TGCAATGCAA GGATAAGTTT CTTCTTCAGA GTGTAGTTGC AAGCCCTGGT
GCAACCACAA AAGATATCAC TCCAGAAATG TTCAATAAAG AATCTGGTCA TGATGTTGAA GAGTGCAAGT TGAGAGTTGT
TTATGTTGCT CCTCCTCAAC CACCATCCCC TGTTAGAGAA GGATCTGATG AAGATTCGTC ACCTCGAGCA TCTGTGTCTG
AAAATGGGCA TTCAAATGCT TTGGACTTTA ATGCGGCTTC AAAAGCTTTC AATGAGCGGG GTGAGCATCA GGACACTTCT
TTTGAGGCAA GAACTCATAT TTCAAAGGTA ACTGAGGAGA GGAATTATGT TATTGAGCAA AACAAAAGAC TTCAGCAAGA
ACTGGAGCTT TTGAGGCGCC AAACCGGCAG TCGGCGCAGC GGCGGTGGCA TACCATTCAT GTACGTAGTT GTTGTTGGCA
TAATTGGCAT CATTCTGGGT TTCCTGTTGA AGAGGACGTG ACCTGAGTGA TTGGTAGCAA TGAGATCAAT TGTAGAAAGC
AACAAGAAAT ATGTGAAATG TGGAAAAACC AAACCAAAAA TTGTTGTCTT ATTGTCGTGC ATTGCTCCTA CAAATTTGGA
ATGTGTGGTC AAAAGTAGGT ACTTGTTCTG AGCCATAGCA ATCATAGACA GTGAACAGAG TTGTATCATG GGAACTGTAA
TTGGTATCTG ATATGCTACA TGTGATTAAT TCTTTAGCAC CATCATAGTG TCCAATATTT TGAACATAAA AAGTCTTCAT
GGTAACACAA AATCATTCTT TACAAGCTTC TTGAAAATGA AAATTTATTT TGTATTTTTG TTAAAA

>Vigan.09G116500.01
ATGAGTTCCA CCGAGATCCT CCACATACAG CCCCAGGAGC TTCAGTTCCC CTTTGAATTG AGGAAGCAGA TCTCATGCTC
TTTACAGTTG TCTAACAGGA CAGACAACTA TGTGGCTTTC AAGGTTAAGA CGACAAATCC TAAGAAATAC TGTGTTAGAC
CTAACACTGG AGTTGTGATG CCTAGGTCTA CATGTGATGT CATAGTAACA ATGCAAGCTC AAAAGGAGGC ACCTCCAGAG
ATGCAATGCA AGGATAAGTT TCTTCTTCAG AGTGTAGTTG CAAGCCCTGG TGCAACCACA AAAGATATCA CTCCAGAAAT
GTTCAATAAA GAATCTGGTC ATGATGTTGA AGAGTGCAAG TTGAGAGTTG TTTATGTTGC TCCTCCTCAA CCACCATCCC
CTGTTAGAGA AGGATCTGAT GAAGATTCGT CACCTCGAGC ATCTGTGTCT GAAAATGGGC ATTCAAATGC TTTGGACTTT
AATGCGGCTT CAAAAGCTTT CAATGAGCGG GGTGAGCATC AGGACACTTC TTTTGAGGCA AGAACTCATA TTTCAAAGGT
AACTGAGGAG AGGAATTATG TTATTGAGCA AAACAAAAGA CTTCAGCAAG AACTGGAGCT TTTGAGGCGC CAAACCGGCA
GTCGGCGCAG CGGCGGTGGC ATACCATTCA TGTACGTAGT TGTTGTTGGC ATAATTGGCA TCATTCTGGG TTTCCTGTTG
AAGAGGACGT GA

>Vigan.09G116500.01
MSSTEILHIQ PQELQFPFEL RKQISCSLQL SNRTDNYVAF KVKTTNPKKY CVRPNTGVVM PRSTCDVIVT MQAQKEAPPE
MQCKDKFLLQ SVVASPGATT KDITPEMFNK ESGHDVEECK LRVVYVAPPQ PPSPVREGSD EDSSPRASVS ENGHSNALDF
NAASKAFNER GEHQDTSFEA RTHISKVTEE RNYVIEQNKR LQQELELLRR QTGSRRSGGG IPFMYVVVVG IIGIILGFLL
KRT*