GBrowse Details

Vigan.09G039400.01

Basic Information:
Name: Vigan.09G039400.01
Multiple alignment
Variant Information
Position: Chr09:4553486..4557463 (- strand)
Length: 3978
Functional Information:
Description: Similar to Peptidyl-prolyl cis-trans isomerase. [V7AKW6, Phaseolus vulgaris]
GO: Biological Process: protein folding (GO:0006457)
InterPro: Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain (IPR001179)
Peptidyl-prolyl cis-trans isomerase, FKBP-type (IPR023566)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:194.99,168.65,114.86,88.02,149.77,276.44,95.10,87.45
Arabidopsis thaliana homolog: AT5G48580.1
Automatic updates:
Name: NM_001249050 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305479 (LOC100305479), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:4553486..4553640 (- strand)
Length: 155
Type: three_prime_UTR
Position: Chr09:4553641..4553729 (- strand)
Length: 89
Type: CDS
Position: Chr09:4554349..4554453 (- strand)
Length: 105
Type: CDS
Position: Chr09:4555042..4555132 (- strand)
Length: 91
Type: CDS
Position: Chr09:4555870..4555932 (- strand)
Length: 63
Type: CDS
Position: Chr09:4556901..4556950 (- strand)
Length: 50
Type: CDS
Position: Chr09:4557150..4557216 (- strand)
Length: 67
Type: CDS
Position: Chr09:4557217..4557463 (- strand)
Length: 247
Type: five_prime_UTR

>Vigan.09G039400.01 class=Sequence position=Chr09:4553486..4557463 (- strand)
CAATAATATA TTTTTCTTTT ACAGAGAATC CCAATTATAA GATACTAATA TAAACCATTT TGAATGTTGA GTTCACCCGA
GTCCGTATCA CGCGGGTTAA TTCCCCTAAC CCGAAAGTTT CCACAATTCT CACTTGTCCT GTTATTACAG TCTTATATAA
CACCAACACC GACTCGCCCT CTGTCTCCCA TTCAGAGAGA AACAAAATCA GCGACTGACT TAGCAAAGGA AAAAAAAAGA
AAGAAAAATG AGTTTCCCTT CTTCCATGAA CGCCGTTACC CTTCTTCTCT TCTTCCTTTT CGTTTCCGTA TTAGGTATGA
AATTCTGCTC TTACTCTTCT TCGTCCTTCC ACGGTCAAAT CTCCATCTCC TCTTTCTCTC GTTTTTCTCT TCGTTCCGCA
ATTGCTTAGA TCTCGCCAAT GTTCCGCTTC AATTCATCAA TTCTTATGGT TTCTCGTTGT CACTGATAAT TTCTTTATCG
TTCTGACTTC TCTTTTTTAT TTCTGTGGTT AAGTTTGTGC CAAGAAGACG GGTGATGTGA CGGAGTTGCA GATAGGCGTT
AAGGTAGCCT TTCAAATGTT ACTCTGGTTA AGATCCATGG CATTTTTTTA TAGTTTATCC TAGAGCTTTT GAATAGTTTG
TGCGGAAAAG GAGTTTGCGT GTTTTTTTTG TTAGAATTCG TTGTTTTGGT ATGTTTTTAG AGTTGATAAT TTGATTATAA
TGGATGTGAT GGGTGTATTC GCCGGTGAGT GTGACAACAT GGAATGATCG GTAGTTTTGT AGGAAATGGA ACTGACGAGT
GTTGTTTCCT TGTCTTAGCT GCAAAGTGAA AGGTTATTAT TTATTTATTT TTGTATAAAA AATGTTAGTA CTTACTGATT
TTATGGCATC AGGGGTGCTT GAACATTTAT GTATTGTTTT GTGTAACTTG ATGTTATGTG TGTTCAAGTG CCGGGAAAAG
CCTTGTACGC GGGTTTGAAA TATTCAATGT TATTGTTTTG AGCATTTGGA ATGGCTAAAG AAATAGATTA TCTTTTAGGC
TATTAGGTAA AATAGTACTT ATTTTGTTCA CAAGAAAAAG AAAATTGTTG TGGTATGCTC GGCGGTTTGT GAGTTGGTGA
TTTAAAATAA AGTATGAATA GTGATTGGAA TCTGGCTATG GCTTTGAATG AGGTAGTGGT ATAGTGTGAT AGGGGACAGT
GCCGGCCTTG CAAAGGCGGA CATTTCAAGG GCTTTACACA TATATGTTGT CTGCTGCTTG TTCTCAAGTT CATTGTGGTA
GATAGCATAG ACAAATTGTT GGTAACTGGT TAGGATGGAA ATGAAAATTT CTGGTAATTT AATGTGGAGG TTGAAAACAG
GGAATACGTC ATGGTTTCCC CTGTGAATGA TGCAAAAAAT TTTATTCCCA GAGATACTGA AGTTGTTGCT TGTCAATATC
TGTTAGCAAG GTTATTTTGA TTGTACATTC GATGAAACCG ACTTTATGCC AGCGTGTTTG CATACTACTG ATGCGCTGCC
TCTTTTTGCA GCATAAACCA GCAACATGTG AAGTTCAGGC ACACAAAGGT GATAAAGTCA AAGTACACTA TCGGGTAAGT
AATTTCTCAA GTTTATGTCG TGAGGCTGGA GGATGGTGCA GTTTAGTGAA ACCTTTTTTA AGTAAAATGT TTGTTGAAAG
GGAAAAGGCT CCAGTGTCTT TGATGAAGTT ACATATAATA AATCTGAACA ATAAGTATTT GGTGCATAAT ATTCACTCAC
CATTCATCAA TAAAATTAAC TCTAATTGAA TGTATTATAT TACGTATAAT GAGCAATTCA TAGTACTATA ATATCTGTAG
GCGATTGTAG TTTCCCTTTC ATGTTGAACG TGCCTTATTC TGGTTTTCAA CAGGGATGGA TAATATTACC TTATTGTTAA
TTTCCTGAAT TGTTTTCTGT GCAGTTTCCA TGTCATTTCT AGAAGTAACA TTGTTCTTGG TCTATCTTGG TGGTTTATTT
TGTTAATTCA TAATCTGAAC CTCGCCTTTT AATCTGGGAA ATAATCTGAC TACCCATTGA AAGAAAATGA GTGGGGGTAA
GGCATCAATG ACATAATCAC AACTGGAAAT CACCTTGATC AATTTCGATG GTGTGCTATT TGTGTATCGT TGCTTTTGTT
TATATGGAGT TTTTATTTTA GGTGATCGAC ATGATACACC ACAGGAAAGC ATTTTAAGCT ACATATTCTC TAACTAATTA
TTATTTTCAA ATCTCATTTC ATTTGTTAAT GTGATGAGGT ATCAATGTAT TCTCTTAGTT TTGTTGATCG TATCCTTGCA
TGTGTTTCCA GGGAAAACTC ACTGATGGAA CTGTTTTCGA TTCTAGCTTC GAAAGAAAAA ATCCCATTGA ATTCGAGCTT
GGTGCTGGTC AAGTGATCAA AGGTATGTTG TGCACAAACA ATTGAAGGTT TTTAAATTTA TAGTTTCATT ACCAATAAAA
GTGGTTATCG ACTAGCTACT GAGCTTGTTT CCTTATTTAC TGAAAGTGGA AGTTATTGAG TAGATAAAAT AAAGGAGAGA
AAGAAAAGAT GCTGCAAACT GTAAAGAAAC TGTATGCCAG ATGACATTTG TGAAATGTAA TGAGTCCTGG AAGTTGGAAA
TACAGGAGAA CCTTTGTACA ATCAATTATT GACGATTGAT TGTATAACAC TGGATTTGGA CGTTTATGAG GCATGCAATA
TGCAAAATGT CACCTTGTAG TATCATTGTT TCCCTTATCA TCTTCATGTC CTCCCCCTGC TCTTTTTAGT ATCTTCTGTT
ATCAGCATTA CCATAAAAAT GTAATTATGA GCTATAATTT ATACTGATAT AGTTTCGAAT ATGTGTCTTT TATTACTTAA
TTAATATGCA CGGGTGTATT TACATAATCA TACTTGTATG CATCGCAATT TTATTACAAA TTACTGGTTT ATGATTGATG
GGAAATCTTT CAAGATAGAG AGGATTTCAT GTCACTTCGT CTCTCTGCAG GGTGGGACCA GGGATTATTG GGAATGTGTC
TTGGTGAGAA GAGGAAGCTG AAAATACCAT CAAGACTGGG CTATGGAGAT CAGGGTTCCC AACCCTCTAT TCCAGGTAAT
TTATCATGTT GATAATGATA GTAATGCTCT ATCCTCAGCA TTCATTTCTA GTTAGTAAAA GTCATGTTTG ACAGCTAGAT
ATTTGATCAG ATTAATCCCC CGGTGTACTT TAGTAGTTCT GATTCTTTTC CTTTAAAGAT ATAGGGACGT TAGGTATCAG
AGAAATTTTT TCATACTTCG AATTATAATT TTTGAGAATT ATGATTATTG TAGTGATTAA ATTTTATTTG GTTAGTAAAA
GAGTATTATA CAAGTTTTTT TTTTTAGATC AAAAGAGTTG TTTATCCTAA AATGTTAATC TATTAACATG TTAAATTATT
TAAAAAGAGG AAATTGTATT TTTATCATTC AAGTTTTTAT TTCAATTTTG GATATTTTAG ATTCTCATCT TTCATAGAAA
TAAACTTCTT AAAGAAACCT GCGAAAAAAT TATTTCCCAA AAACGTTGTT TCCTTTTACT TTTTTTAAGT TAAATCAAAC
TAAAGAAACA TTGTTTTTCG TTTTCAGATT CTTGGCAACA TCTCTTTCTA TGTTGATGTG TGTGTGTTTT ATCATATTTT
AATTACATTG CCATACGAGT TTAGTTATGA TACATCACGA GTTATAACTC GCAGGTGGTG CAACACTGAT ATTTGACACT
GAGCTGGTGG GAGTGAACGG TGTAAGTTTG GATGAAGAGG ATAAGACGGG CTCTGAACTG TAGACAAATA GAAAGAAATG
GAATGTTGAG ACTGTTTGCT ATCTTAGCTT ATTTTTGTTC TTCAATAATG ATTATTTTTG TTCTATAATG ATTTTATGAC
CCGAGGTTTC ACTGTTTAAT TCTGAGCTTA ATTTAGAAAG ATTTAGACTC CCTTCCCG

>Vigan.09G039400.01
CAATAATATA TTTTTCTTTT ACAGAGAATC CCAATTATAA GATACTAATA TAAACCATTT TGAATGTTGA GTTCACCCGA
GTCCGTATCA CGCGGGTTAA TTCCCCTAAC CCGAAAGTTT CCACAATTCT CACTTGTCCT GTTATTACAG TCTTATATAA
CACCAACACC GACTCGCCCT CTGTCTCCCA TTCAGAGAGA AACAAAATCA GCGACTGACT TAGCAAAGGA AAAAAAAAGA
AAGAAAAATG AGTTTCCCTT CTTCCATGAA CGCCGTTACC CTTCTTCTCT TCTTCCTTTT CGTTTCCGTA TTAGTTTGTG
CCAAGAAGAC GGGTGATGTG ACGGAGTTGC AGATAGGCGT TAAGCATAAA CCAGCAACAT GTGAAGTTCA GGCACACAAA
GGTGATAAAG TCAAAGTACA CTATCGGGGA AAACTCACTG ATGGAACTGT TTTCGATTCT AGCTTCGAAA GAAAAAATCC
CATTGAATTC GAGCTTGGTG CTGGTCAAGT GATCAAAGGG TGGGACCAGG GATTATTGGG AATGTGTCTT GGTGAGAAGA
GGAAGCTGAA AATACCATCA AGACTGGGCT ATGGAGATCA GGGTTCCCAA CCCTCTATTC CAGGTGGTGC AACACTGATA
TTTGACACTG AGCTGGTGGG AGTGAACGGT GTAAGTTTGG ATGAAGAGGA TAAGACGGGC TCTGAACTGT AGACAAATAG
AAAGAAATGG AATGTTGAGA CTGTTTGCTA TCTTAGCTTA TTTTTGTTCT TCAATAATGA TTATTTTTGT TCTATAATGA
TTTTATGACC CGAGGTTTCA CTGTTTAATT CTGAGCTTAA TTTAGAAAGA TTTAGACTCC CTTCCCG

>Vigan.09G039400.01
ATGAGTTTCC CTTCTTCCAT GAACGCCGTT ACCCTTCTTC TCTTCTTCCT TTTCGTTTCC GTATTAGTTT GTGCCAAGAA
GACGGGTGAT GTGACGGAGT TGCAGATAGG CGTTAAGCAT AAACCAGCAA CATGTGAAGT TCAGGCACAC AAAGGTGATA
AAGTCAAAGT ACACTATCGG GGAAAACTCA CTGATGGAAC TGTTTTCGAT TCTAGCTTCG AAAGAAAAAA TCCCATTGAA
TTCGAGCTTG GTGCTGGTCA AGTGATCAAA GGGTGGGACC AGGGATTATT GGGAATGTGT CTTGGTGAGA AGAGGAAGCT
GAAAATACCA TCAAGACTGG GCTATGGAGA TCAGGGTTCC CAACCCTCTA TTCCAGGTGG TGCAACACTG ATATTTGACA
CTGAGCTGGT GGGAGTGAAC GGTGTAAGTT TGGATGAAGA GGATAAGACG GGCTCTGAAC TGTAG

>Vigan.09G039400.01
MSFPSSMNAV TLLLFFLFVS VLVCAKKTGD VTELQIGVKH KPATCEVQAH KGDKVKVHYR GKLTDGTVFD SSFERKNPIE
FELGAGQVIK GWDQGLLGMC LGEKRKLKIP SRLGYGDQGS QPSIPGGATL IFDTELVGVN GVSLDEEDKT GSEL*