GBrowse Details

Vigan.09G022400.01

Basic Information:
Name: Vigan.09G022400.01
Multiple alignment
Variant Information
Position: Chr09:2531941..2536987 (- strand)
Length: 5047
Functional Information:
Description: Similar to NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like. [XP_004510155.1, Cicer arietinum]
InterPro: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 (IPR007523)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:107.21,77.13,16.92,19.82,28.34,28.27,25.11,13.34
Arabidopsis thaliana homolog: AT2G44525.1
Automatic updates:
Name: NM_001253037 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100816956 (LOC100816956), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:2531941..2532444 (- strand)
Length: 504
Type: three_prime_UTR
Position: Chr09:2532445..2532531 (- strand)
Length: 87
Type: CDS
Position: Chr09:2533569..2533669 (- strand)
Length: 101
Type: CDS
Position: Chr09:2534222..2534256 (- strand)
Length: 35
Type: CDS
Position: Chr09:2535720..2535836 (- strand)
Length: 117
Type: CDS
Position: Chr09:2536647..2536825 (- strand)
Length: 179
Type: CDS
Position: Chr09:2536826..2536987 (- strand)
Length: 162
Type: five_prime_UTR

>Vigan.09G022400.01 class=Sequence position=Chr09:2531941..2536987 (- strand)
GATTTTTTTC TCTCACTTGC TTTGGTAATT GCTTTTACAA AGAATCATTA AACTCTTCAA TCATGTAATT AAACAAACAA
TAATAAAATT GAAAATGGCT TGAGGGAAGG GTGGAGAAGA ACCGAGTTCG TTTGGTGCTG GAAAGAGCAA GACACACAAG
GCATGGCGGT TAGGCAAAGA GCAGTATCTG CACTTCCAAC CCTTTTACGC ACTCTTCGGA AAGAACCGTT AAAGCCTCAC
AGTCATGTCA ACGCGTTACC CTCTCTTCGA CGCGCTTTCT CTTTGTACGA TCAGATCAAC CTCATCGATC AAGTCCCCGA
AGACCAGCTC CGATTTCAAG GGTTGGTACC AACCTATCTT CCCCTTTTGT TTTTTGTTCA TGGAAAGTTT TAAATTTTAG
TTTTTTTCAT GTGGGGATTG AGGAAGAGAG TTGAATGTAA AATGGGTTTT CTCCAATTTC ATCTTCCCCT TTTGTTTTTG
TTCATGGAAA GTTTTAAATT TTAGTTTTCT TCATGTGGGC TTTGAGGAAG AGAGTTGAAT GTAAAATTGG TTTTCTGCAG
TTGTCTCAAA TAACATGGTG ACAGGATGTA TAACTTGATG CAGAGAGTGA AATTGATTGT AATATTTTTG TTCCTTGTTT
TCCATTCTTG AAATGGGGTG TTTTAGATTT TAGTTTCCTA TTCTTCTTCT TCTGTTAATT TAGGGTACGA GGAAGAGTAT
TGGATGTGAA ATGGGTTTTC GTGAATATTC TCAAGTAACT GGACTTACGG ACTTAACTTG GGTGTAATTT CTGTTCATTT
TTTCTTCATT CTGGTATGGG TGTTTAAAAT TTTGAATTTT TAATATGGGG TTCGAGAAAC AAAGGTGAAA GGGAAATGGG
TTTTGTAGAA TTTTCTCAAA CAACATGGTG ACATGATGAT GTAATTTGAT GCATCGACTT AGCTTGGTTG CAATTTCTCT
GTTCCTTTAT GCCTTTCTGG GTTTTTTCTT CTCATTCAGA AAGCAGGGGT GTTTTAAATT TTATTTTTTT TCAGTAATGG
GTTCAAGTAA TAGACTTAAT TGATTGTGAA ATGGGCTTGT AGCATATGAT TTTTGCAGTT ACTTAACATG TCTGTAAATT
ATTATTATTT TGTTTATTTC AATTTGTTTA GGTATAATGA TACGGGGTTT ACGGTAAATG GGGTTGAGTA TGAAGGAAGC
TTACTTTGTG TTGGAAATTT GCTCATGTCT TGGAAACCTA AGAAGTTTTC AGAGATCACT GCTGATAGGT TTGTTTGTTC
TATGTTCCTT GTCTCTTCTT CCTTATCTTT GTTGGTAACA CTTTTATTCA AATAAGCATT TATGCATTCT CCTGTTCCTC
TAAACCCCTA TATATGAATG AAGCTGTTGT ATTTTATCGT TTCTTTTACA GTTAATATTT GTCCTGAAAT TGATCCTTTA
CGCCTAAAGT TGAATAAAGA ATGGAGTGTT AACTGTGCTG CCTTATTGAT TCAAGTCCAA GGTTTCCAAT TTACCTTTGA
AGTTTGAAGA AAAAAACTGA ACTTACATTA ACTCATAATA ATATTTCTGA ATGTATGTAT ACAACCTTAA CATATCTATA
AGCAGAAAAT AATGAAGCAA CAAAGGTTAT AAACCGATAG TCAATCTGTC TAGTAGTGTT TTCTTTTTCA GTTTTGAAAC
CTGTAAATGG AAATTCCACT AAAAGCTAGA AATTGTTGCC TCTCACAAAA TGGCGTTTTG AAATGGTTGC AACATGAATG
AATCGTGTGC ACGAACATGC TATAAGAACT TAGGTAGTGA CCACTGTCTT ACTGTAATGA AGTTGATCTA GTATGCTGGC
AGATGACGAC CAGAAGAAAC CTTAAACCTT ACTATGCTAC ACCACTGCAC TGGAAGCCTC ACAATGAGAG CTTAACCCAG
AACACCACTC TTAAATCAAA AGGAAGAATT GTGAAATACT TCTGTGGACA AAGCAATAAG CAAATCACTA GTACTATCGC
GCAAAAAAGT AGCCACAAGT GTGGAACATA CATAAATGAA ACTTAAAACA ACTTTTAGAA CTGAACTTGA GAACCAGGCA
AAAGCACCAT TGGCAAACCT ATGACTTGCA TAGGTTAGCT TGAGATAAAA CTGCCAAAAT CAGGAATGAA TGAAGAACTT
GAAAGGCAAA CACCTGTGTC AAAATGTATT CAACACCAAG TGACATGACA TGTCAAGCTC TTGCATGTTT TGGCATGTGA
ACAGCTGGGA AGTAAACTGA TGTTGCTTTG TGCATGGATG ACGAACACTT CTGATTCTCT GTGGTTCTTT ATTTTCTGTA
TTTTGTATTT GCTTGCTTTT CTCTCATGCA TTCCTTTTCT TCCCAAAGTA TTTGTAGGAC CCATTGTTTT CTTTAATCTT
TTGATTACTA CTTTTAAATT GCATTACTTG GATTCCTTTG TAGAGGGTGG GTATTTATAA TGTGTTTATT ATCCTTCTTT
AATCGTTATT TTGTATATCC TCAGAATTGA GCACACGAGA AATGGATGAT AACATCTGAT AATTGGCAAT TATTAATTCT
ACTTCCAGTT TAAAGGATGT GTGCATCGTA GTGTAATAGT TATGTTATGA AACATGCAGA GAAGCGACAA GAAGTAAATG
CAATATAACA TTCTAGTTTC ATCTCTGTTT GTTTAGGGGA AAAAGCATTA TGTTATCTTG CTCTAATATG TTATCTTGTC
TCTTCTTACA GCTTGTCACT CTTCCAAGTT ATTCGCCCTA TTCCAGGTAG GATTTTTAGT TTTGACATTC ATTTTGCTTT
TGCTTAACAT TCTGTCTCTC CCAAATTTTT GTGAAGTTCT ACTTTTCCTT TTATATTTCC CTTTTGGGAT TAGGTAGGAT
ACTTCATAAT CTTTTATTCC CTGAATGAAT AATTAATGAA TGCATGCTGT AATTTCTAAA TCACTTTAGA AGTGGTTGAC
ATACTTAAAA CAGGTGGGTC CTATACATGC AATACATTGA AGTTAGTTTC ATTGTATATA TGTATGTTGT TTGTTGTAGT
TTGTTAAGTT AGGACCTTAA AGTGGATACA TATCTCTCTC AAATAATGAA AATTAGTAGA AGTAATATCA TTTCAATTTG
TTGTGTCCTA TCTTTTGTAG TGTCCTATCT CTATTTCTCT TTTCTTATCT TTGATATTTT GTTCCATATA CAGCTAATTA
CTTTTAGTTA ATTTCAACAC ATTGCCTTTT CTTAATATAT TATTAATTGA ATGCTGTGAT TGCCTATTTA ATTGCTTTTG
ATCTATATTA ACTGACTCTT GGAAAAATTA TTTGCCAGAG ATTTTGATTC TTGGCTGTGG AAGGAACATT CAACATGTAG
ATCCTGAACT GAGACGGTTT ATACGATCTA CTGGCATGAA ATTAGAAGCT GTAGATTCGG TATCTATATG ATTTATTTGG
TTTGAGACTT GTGCTTGATT TTATTAGTTC ATCTTACATT GCTGGTTTGG TACTCATTAT TATGTTTTTA TTAAGTAATC
TAAGTAAACT AGCACTTAGG AGGTCCTTGT AGGTTGTGGG TAGAGGGAGG CATCAGAATT ATTAAACTTG TTTCTAAGAT
TTAGAAAGAA ATGGATTTAA GAGGATAGAC CAAGAATAGA AAAAATGAGA CGAGCTTCTC TGAAAGTTAA TTTGACTTCT
GTGTAAAATA AAAAAGTGAA AATTTAGAGG AGGTATATGA AAGAACTTCT ACAAATTAGT TGATGCATAA GCTAATTTTT
AACTTATGGA AAAACTCATT TCAATTTTTT CTTATCTATC TCTTCAGAAG TTTTTAAATG GTTAGTCCAA CAGTTCATAA
TTCTAGCATG ATGGTACAAA TGATCAGTGG AAAATTTAAT TTTGACCTAC TGTTTTAAAA CTAATTTACA TTATCATTCA
ACCATATGTT GTCATATCAC TGAAAGAATT TGGTAGAAAC TTCCAATGTG AAACAAAGTT TATAATAACC AATGTATCAA
ATAAGTCCTG GGAAATATAT GTTGGCAAGG TTGACCTTTT AAATGGAGAG AATCTTCTAT AATTTTCATT TTATTTGATC
AATGGTGATA GATAAGTTGC ATCTATGTGT AATTATTACT GAATAATGAA TTTAATATAT GGTATTAATA CCTTAAGACT
TACCCATGCT ATTATTCTCA TCCAGACATT TCCAAATGGT GTAAGAAAGA TTCCAACCAA AATTGCTACT TTAACTGGTT
CTTTGAATTT TGAATGTTAC ATGATTTGTT TATTATTCAT CAGAGTTTAG TTCTATTATG CAGTATCAGT ATAAAAGCTT
GTTACACTTC CAACTTACTA GAAGTTACCC TATTTATGAC AACTATTTTA CCATGCATGG AAATCCATAA CTTGATGACT
GCAAAAATCT ATATACTGAG TTAATGCTAA TTAAATGCTT TTGACTGTTT ACACAGAGAA ATGCAGCATC AACTTACAAC
ATACTGAATG AAGAAGGTCG AATTGTGGCT GCTGCACTTC TTCCACATGG AGTTTCTGCA TGAAGCCTGG ACTGTTCACA
TCCATTCCAT TAAGGATCTT AACCCAATAC TTTGAGACAT GCTTTGATTT TCACGTTTAG AAAGTTTTGA CATAGCAATA
GCACAATGTG AATCAAACTC AACATAGTCC TTTGATGTCT GCTAAGGCTT TCAAGAGTAA TAAAGAGAAT TGAAATGTAT
AGACTGCAGC AAATCCCTGC AAATTTGGAC TCTAGTTACT TACTGGTTCT TTGGCTTGAA TGCTATCTCA CTTTCTCAAG
AGTTAATGCT ATTTTACTTT CTCAAGAGTT GAAAGGAAAA TGGCTTGAAT CAAACCTTAA CTTTTACTGT CCCAATAAAC
CCTTTATGGT TTGTCTGGAT GAGATAAAGG AAAATGGAAA AGATCATATG CTATTATGCG TGCTTGGACG ATCTACAAAA
ACACTTTTTG CATAGAGAAA TGATAGTTCT CCATGAAAGT ATTTGTTACA TAATCTATGC AATATTGGAG TTTAACATCA
TTATGGA

>Vigan.09G022400.01
GATTTTTTTC TCTCACTTGC TTTGGTAATT GCTTTTACAA AGAATCATTA AACTCTTCAA TCATGTAATT AAACAAACAA
TAATAAAATT GAAAATGGCT TGAGGGAAGG GTGGAGAAGA ACCGAGTTCG TTTGGTGCTG GAAAGAGCAA GACACACAAG
GCATGGCGGT TAGGCAAAGA GCAGTATCTG CACTTCCAAC CCTTTTACGC ACTCTTCGGA AAGAACCGTT AAAGCCTCAC
AGTCATGTCA ACGCGTTACC CTCTCTTCGA CGCGCTTTCT CTTTGTACGA TCAGATCAAC CTCATCGATC AAGTCCCCGA
AGACCAGCTC CGATTTCAAG GGTATAATGA TACGGGGTTT ACGGTAAATG GGGTTGAGTA TGAAGGAAGC TTACTTTGTG
TTGGAAATTT GCTCATGTCT TGGAAACCTA AGAAGTTTTC AGAGATCACT GCTGATAGCT TGTCACTCTT CCAAGTTATT
CGCCCTATTC CAGAGATTTT GATTCTTGGC TGTGGAAGGA ACATTCAACA TGTAGATCCT GAACTGAGAC GGTTTATACG
ATCTACTGGC ATGAAATTAG AAGCTGTAGA TTCGAGAAAT GCAGCATCAA CTTACAACAT ACTGAATGAA GAAGGTCGAA
TTGTGGCTGC TGCACTTCTT CCACATGGAG TTTCTGCATG AAGCCTGGAC TGTTCACATC CATTCCATTA AGGATCTTAA
CCCAATACTT TGAGACATGC TTTGATTTTC ACGTTTAGAA AGTTTTGACA TAGCAATAGC ACAATGTGAA TCAAACTCAA
CATAGTCCTT TGATGTCTGC TAAGGCTTTC AAGAGTAATA AAGAGAATTG AAATGTATAG ACTGCAGCAA ATCCCTGCAA
ATTTGGACTC TAGTTACTTA CTGGTTCTTT GGCTTGAATG CTATCTCACT TTCTCAAGAG TTAATGCTAT TTTACTTTCT
CAAGAGTTGA AAGGAAAATG GCTTGAATCA AACCTTAACT TTTACTGTCC CAATAAACCC TTTATGGTTT GTCTGGATGA
GATAAAGGAA AATGGAAAAG ATCATATGCT ATTATGCGTG CTTGGACGAT CTACAAAAAC ACTTTTTGCA TAGAGAAATG
ATAGTTCTCC ATGAAAGTAT TTGTTACATA ATCTATGCAA TATTGGAGTT TAACATCATT ATGGA

>Vigan.09G022400.01
ATGGCGGTTA GGCAAAGAGC AGTATCTGCA CTTCCAACCC TTTTACGCAC TCTTCGGAAA GAACCGTTAA AGCCTCACAG
TCATGTCAAC GCGTTACCCT CTCTTCGACG CGCTTTCTCT TTGTACGATC AGATCAACCT CATCGATCAA GTCCCCGAAG
ACCAGCTCCG ATTTCAAGGG TATAATGATA CGGGGTTTAC GGTAAATGGG GTTGAGTATG AAGGAAGCTT ACTTTGTGTT
GGAAATTTGC TCATGTCTTG GAAACCTAAG AAGTTTTCAG AGATCACTGC TGATAGCTTG TCACTCTTCC AAGTTATTCG
CCCTATTCCA GAGATTTTGA TTCTTGGCTG TGGAAGGAAC ATTCAACATG TAGATCCTGA ACTGAGACGG TTTATACGAT
CTACTGGCAT GAAATTAGAA GCTGTAGATT CGAGAAATGC AGCATCAACT TACAACATAC TGAATGAAGA AGGTCGAATT
GTGGCTGCTG CACTTCTTCC ACATGGAGTT TCTGCATGA

>Vigan.09G022400.01
MAVRQRAVSA LPTLLRTLRK EPLKPHSHVN ALPSLRRAFS LYDQINLIDQ VPEDQLRFQG YNDTGFTVNG VEYEGSLLCV
GNLLMSWKPK KFSEITADSL SLFQVIRPIP EILILGCGRN IQHVDPELRR FIRSTGMKLE AVDSRNAAST YNILNEEGRI
VAAALLPHGV SA*