GBrowse Details

Vigan.09G020200.01

Basic Information:
Name: Vigan.09G020200.01
Multiple alignment
Variant Information
Position: Chr09:2187914..2190588 (+ strand)
Length: 2675
Functional Information:
Description: Similar to 10 kDa chaperonin-like. [XP_004510137.1, Cicer arietinum]
GO: Biological Process: protein folding (GO:0006457)
Cellular Component: cytoplasm (GO:0005737)
InterPro: GroES (chaperonin 10)-like (IPR011032)
Chaperonin Cpn10 (IPR020818)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:41.84,43.57,60.03,109.23,50.72,78.35,33.04,42.30
Arabidopsis thaliana homolog: AT3G60210.1
Automatic updates:
Name: NM_001249277 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500567 (LOC100500567), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249521 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306026 (LOC100306026), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:2187914..2188074 (+ strand)
Length: 161
Type: five_prime_UTR
Position: Chr09:2188075..2188177 (+ strand)
Length: 103
Type: CDS
Position: Chr09:2188258..2188316 (+ strand)
Length: 59
Type: CDS
Position: Chr09:2188461..2188511 (+ strand)
Length: 51
Type: CDS
Position: Chr09:2189542..2189607 (+ strand)
Length: 66
Type: CDS
Position: Chr09:2189706..2189753 (+ strand)
Length: 48
Type: CDS
Position: Chr09:2190094..2190123 (+ strand)
Length: 30
Type: CDS
Position: Chr09:2190286..2190354 (+ strand)
Length: 69
Type: CDS
Position: Chr09:2190355..2190588 (+ strand)
Length: 234
Type: three_prime_UTR

>Vigan.09G020200.01 class=Sequence position=Chr09:2187914..2190588 (+ strand)
TAGAAGTTTC CTTGTAATAA GTTCTAGTAC TTTCTCAAAT TTCTACAGAT TTTTGGGGCA CTCATTTTGT ATTTTCCTTG
GTCTTTAGCA ATCGAACAGA TAAACCTAAG AGGGTTTAAC CTGGTTTCCT TACTCCATTC TTTGCTGTTT CGAACTGGTG
TATGGTCTCT TCTCTCTTAT CCATGGCATC AACGTTTCTC ACCCTGCCAA CTCCTTTCCT ACACAAAACC AGTGCCATTT
CTTTCTCTAA CAAGAGGCCC TCATGTATGC ATCTTTCAAT TTTGTTTTCC AAATTCAACC TCTTACTGAA ATTCTTAACC
TTTTCTTATA TGGGTCGAAT GCAGTTTCGC AGAGGAGCAC TCTGAAGATC AATGCAATTG CCAAAAAATG GGAACCCACT
AAGGTTCTTT CCTTTTTCTT TAAGAGGGTT TTCGGAATTG GTTTTATTTT TGTAGCCTAC ACCATCCCAC TAATTCCCCC
CTTTTCCCGT ATTTTAAATT TCTGAAAGTT CAAATTTTTT CTTCTAAGTT ATGATTTTGG GATGCAGGTT GTGCCTCAGG
CTGACAGAGT TCTTATTCGT TTGGAAGAGC TATCAGAGGT ATGCTATGCT CTTATCCATG AAACCAAATA TTTTTACATG
GGGTGTTGTT TATTCTTAAT CTTTTAGTGT ATCATATTCC AACTATACCT TATCCGAATG TTGGACAAGT TTGCGGGTTC
TCTATTTGGG TAACTTGCAG TTTGATGTGA TTTTGAGAAA TCTATTTAGA TTTTGCTATG AAATAAAAAT TTTGGTCACT
GTATTTCAAT AGCAACTTCA ATCACAACAA CTACCTCCAA GTTGGTGCCA CTTGTGTACA AGTGAAACAA ATGCATTAAA
AATTATTCTG AGGTTTCTTC AGGCAATGTC CTGAGCTTGG TTTTGTATTG TGTTGGTAAA AACAAAAACG CCCATGTCAC
CCTATAGTGA GACCCAATGA TGCTGTCCAG GGTAGGTAAT TGCTATTTAA ATGAACCATT ATAAGTTGCA GTCTTAATCC
AAATGCATAA TATTAAGGAA TTATGTAAGT AGAAGGTATA GAATGTGTTC TAAAGCCTAT TAAAGATATG TAAATGTAGT
GGTATGATGC AGTGCCTGTT GTTGAGAAGT ATTAGTTCTG ATCTCGAACT TTATAGTTCA GGAGCTTTTT CTAAGTGTTC
TTGAATGTGT TAATTTTTGA GGTATTTAAG GTTCTGTTGT ATTAGTCACG CACGCTGACA TAGCATTAGC ATGGCAATCT
GTTTGTTACA ATTGATTGAA ATTTTTGTTG GTCTCTATTT GTTGACAGTG TTTCTTCCAC CATTTGTTGA ATTTCTAGTT
ATCTATTGAC TTCATATCAT TGTTTTATCA TTGTTTTTAC CCAATTGGTA GAATGACAGA GAAAGTGATG GTCAAATAAC
ACCTGATGTA GTATTATAAC TAGTTGGTGG CTTCATCTGT TGCATTATGA ACTAATTTGA TGTAATTTAG GATACCGGTT
TGCAAAAGAT TGTTATATGG TTAGATTAGA ATAACTTATT CTGCAGCTGA CACAGTACTT TTTTTCCATG ATGCATAGCT
GATTTCTGAA TATGTGTTTT TGGTGTAGAA AACAGCTGGG GGAGTTTTGC TGCCCAAGTC AGCCGTGAAA TTTGAGCGAT
ATCTCGTGGG AGAAGTAAGC AGACATAGAT ACATTTAGTA CTTTGGTTCT GCAAATGTTT TCATGGGTAA TTGGATATAA
TATGTGGTAA TTTTCTTTCA TATTTATTTC AGATCCTAAA TGTTGGTGCT GAGGCTGGAG AACTAAAGGC TGGAACAAAG
GTACAAGTTT AATTACTGCA AAGGAGGTGA AATAGAAATT GGCAAAAGAC AAAACAATAA TAAAAAATAG AGTAAAGTAT
TCAGTTTTCT CAAATTACAT TGAGCCTCCA TTTTCTTTAA AATTCTGCAC AAACCTTTTC TTTGTTCTAA AATCATTACA
TTGCCATCTC AGTTTACATT ACACATACAT CCCCTGATAA GAGAAGTCCT TGTTGAAAAA AGTACTAACT TTAGGGTATC
ATTGTAATTT AAATTCTCAT TATAAATATC ATCTCATACA GCATTGAAAA TCAACTCCAA CTTTTTGTTA TAAATGTTAA
CTCTGATTTG TCTTTTGCAG GTACTATTCA CTGACATGAG TGCTTATGAG GTAAGGGGGA CTTCAAATTT TTTGCTTTAA
AGTATACTTA GTGTTTATCT ATCTAATGAT ATTCTAAGTT GTAATTACAA CTTAGCTCAT TACAATTGAC AGCATTAGTT
ATTTTAATGC CATTATTACT AATTAAATGC TTTTGTCATC ATAATTTATC AGGTGGATTT GGGGACTGAT GCAAAGCACT
GCTTCTGCAA AGCAAGTGAC TTGTTGGCTG TGGTTGAGTA GGGTTTGGCC ACTGCATGAA ACACTATTTT TTGATAATAT
CTTTGACAAA TGTATTTTCA TTTGAATAAA CCCTTTCTCT TAATTGGTCT AAAATGTTAT ATTCCTTTTC TGTTATAATA
ACCTGTTGCT TTCCTTATGT AGTTTCTGAA TCAAAACTCT AATCATACAT TTCTGTTCTA CCCTTGTTAA AGTTACATTA
TCTGTTTATG ATTTGTAGGC TAAAACATGC TCGTG

>Vigan.09G020200.01
TAGAAGTTTC CTTGTAATAA GTTCTAGTAC TTTCTCAAAT TTCTACAGAT TTTTGGGGCA CTCATTTTGT ATTTTCCTTG
GTCTTTAGCA ATCGAACAGA TAAACCTAAG AGGGTTTAAC CTGGTTTCCT TACTCCATTC TTTGCTGTTT CGAACTGGTG
TATGGTCTCT TCTCTCTTAT CCATGGCATC AACGTTTCTC ACCCTGCCAA CTCCTTTCCT ACACAAAACC AGTGCCATTT
CTTTCTCTAA CAAGAGGCCC TCATTTTCGC AGAGGAGCAC TCTGAAGATC AATGCAATTG CCAAAAAATG GGAACCCACT
AAGGTTGTGC CTCAGGCTGA CAGAGTTCTT ATTCGTTTGG AAGAGCTATC AGAGAAAACA GCTGGGGGAG TTTTGCTGCC
CAAGTCAGCC GTGAAATTTG AGCGATATCT CGTGGGAGAA ATCCTAAATG TTGGTGCTGA GGCTGGAGAA CTAAAGGCTG
GAACAAAGGT ACTATTCACT GACATGAGTG CTTATGAGGT GGATTTGGGG ACTGATGCAA AGCACTGCTT CTGCAAAGCA
AGTGACTTGT TGGCTGTGGT TGAGTAGGGT TTGGCCACTG CATGAAACAC TATTTTTTGA TAATATCTTT GACAAATGTA
TTTTCATTTG AATAAACCCT TTCTCTTAAT TGGTCTAAAA TGTTATATTC CTTTTCTGTT ATAATAACCT GTTGCTTTCC
TTATGTAGTT TCTGAATCAA AACTCTAATC ATACATTTCT GTTCTACCCT TGTTAAAGTT ACATTATCTG TTTATGATTT
GTAGGCTAAA ACATGCTCGT G

>Vigan.09G020200.01
ATGGTCTCTT CTCTCTTATC CATGGCATCA ACGTTTCTCA CCCTGCCAAC TCCTTTCCTA CACAAAACCA GTGCCATTTC
TTTCTCTAAC AAGAGGCCCT CATTTTCGCA GAGGAGCACT CTGAAGATCA ATGCAATTGC CAAAAAATGG GAACCCACTA
AGGTTGTGCC TCAGGCTGAC AGAGTTCTTA TTCGTTTGGA AGAGCTATCA GAGAAAACAG CTGGGGGAGT TTTGCTGCCC
AAGTCAGCCG TGAAATTTGA GCGATATCTC GTGGGAGAAA TCCTAAATGT TGGTGCTGAG GCTGGAGAAC TAAAGGCTGG
AACAAAGGTA CTATTCACTG ACATGAGTGC TTATGAGGTG GATTTGGGGA CTGATGCAAA GCACTGCTTC TGCAAAGCAA
GTGACTTGTT GGCTGTGGTT GAGTAG

>Vigan.09G020200.01
MVSSLLSMAS TFLTLPTPFL HKTSAISFSN KRPSFSQRST LKINAIAKKW EPTKVVPQAD RVLIRLEELS EKTAGGVLLP
KSAVKFERYL VGEILNVGAE AGELKAGTKV LFTDMSAYEV DLGTDAKHCF CKASDLLAVV E*