GBrowse Details

Vigan.09G018700.01

Basic Information:
Name: Vigan.09G018700.01
Multiple alignment
Variant Information
Position: Chr09:2036374..2037667 (- strand)
Length: 1294
Functional Information:
Description: Similar to uncharacterized LOC101206273. [XP_004159994.1, Cucumis sativus]
GO: Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, LIM-type (IPR001781)
Protein of unknown function DUF581 (IPR007650)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:14.79,25.58,50.92,65.51,72.16,49.09,38.98,75.51
Automatic updates:
Name: NM_001248221 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499981 (LOC100499981), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:2036374..2037031 (- strand)
Length: 658
Type: three_prime_UTR
Position: Chr09:2037032..2037077 (- strand)
Length: 46
Type: CDS
Position: Chr09:2037425..2037600 (- strand)
Length: 176
Type: CDS
Position: Chr09:2037601..2037667 (- strand)
Length: 67
Type: five_prime_UTR

>Vigan.09G018700.01 class=Sequence position=Chr09:2036374..2037667 (- strand)
TTTTTCTTTG GTTCCATTCC TGCATTTTCT AGCTTCTTCT TCTCTTCTCT CTCTGAGTTT TTCATCTATG GCTACTTTTC
CTTCTCCCCC TTCACCTTCT TCTTCTTCCT CAATTCCTTC TCCAAGATCT AGCATGTTTT ACTATGCTAG AAGTGAAAAC
CACTATGAGG AACCTCACTT CCTTCAAGCT TGTTTTCTTT GCAGAAAACC ACTAGGCCAA AACCGTGACA TCTTCATGTA
CAGGTTAGGT CAATTCAGAT CACTCAATCC ACCTCTTTCA TCTGTTTCAC CCTACCCCAG ATGCTGATTC TTCTTCATTC
CTTCAACTTT CAATGAAAAA ATTTCATCTT TACACTGAAT TTCCATGTGG GATGCTGTGT TCTAGACCTT TGTTCTCAGA
TCTAGAATAA AGTACCTGCA ATATTTCTCT GGCTGGACTA ATCGAGACTT GTTGATTTCT TTTCAGCTGA TTTAATTCAA
TCAATAAGTC CAAAGATTTA CTTTTTATTG TTGTTTTGTG TTAGATTGAT TGAAATTTTG TGATTTGTTG AGATTTGTGA
TGAGGGTTTT TGTAACTGTT GTTTATGCAG AGGGAACACA CCATTTTGCA GCAAAGATGC AGGCAGGAGC AAATAGAGAT
TGATGACGCA AAGGAGAAAA CTTGGAAGCT TTCTTCCAAA AGGGGTGTGA GACAATCAGA GAACAGTCAA AATAATTCCA
CAACAAATAA GGCTGTGAGA ACAGGCACAG TGGCAGTGGC ATAATCAAGG AACAATCCAG GACATGATGA TGATGATGAT
CATGATTGTG ATTGATGAAG ATGAGTGGGG AAAAGGGTCT AATTTTTTTG AAGTGAAAAA GATGGAATGG AGAATTCCAA
AGGAAGATGA TGAAGTGCAA TCAATAATCC ATGAAGATTC TGATGAAACC GGGATGAATC TTCTCTGTCT TTGTAAAGAA
AAAAGTTAGG GTTTTTTTTT TTTTTTTTCA TTTGGGAGAA AAGAAATACC CAAACAAGAA TTTTTGGCTA CTTTTGTTTC
TTTTTGGTAA TATTTGATTT GACCCTTTTA TTTTTACTCT TTTTCTCTCG TGTTCTATAA GAAAAAGAAA AAACATCATG
GATGAATTGA TGAGATGGTG TTTCGCTTTC CCAAAATTTG AGAAAATGAA GAAAAAGCGT AGAAGATTCT TCATCCAAGA
TCTAGATCAG TGAACCTTGT TACATTCTTC CAAGAGCTTG TGTTCATGGC AAATTTTATT TTCCTTGGTT ACTAAAAAAT
TATTTTCATA TAAA

>Vigan.09G018700.01
TTTTTCTTTG GTTCCATTCC TGCATTTTCT AGCTTCTTCT TCTCTTCTCT CTCTGAGTTT TTCATCTATG GCTACTTTTC
CTTCTCCCCC TTCACCTTCT TCTTCTTCCT CAATTCCTTC TCCAAGATCT AGCATGTTTT ACTATGCTAG AAGTGAAAAC
CACTATGAGG AACCTCACTT CCTTCAAGCT TGTTTTCTTT GCAGAAAACC ACTAGGCCAA AACCGTGACA TCTTCATGTA
CAGAGGGAAC ACACCATTTT GCAGCAAAGA TGCAGGCAGG AGCAAATAGA GATTGATGAC GCAAAGGAGA AAACTTGGAA
GCTTTCTTCC AAAAGGGGTG TGAGACAATC AGAGAACAGT CAAAATAATT CCACAACAAA TAAGGCTGTG AGAACAGGCA
CAGTGGCAGT GGCATAATCA AGGAACAATC CAGGACATGA TGATGATGAT GATCATGATT GTGATTGATG AAGATGAGTG
GGGAAAAGGG TCTAATTTTT TTGAAGTGAA AAAGATGGAA TGGAGAATTC CAAAGGAAGA TGATGAAGTG CAATCAATAA
TCCATGAAGA TTCTGATGAA ACCGGGATGA ATCTTCTCTG TCTTTGTAAA GAAAAAAGTT AGGGTTTTTT TTTTTTTTTT
TCATTTGGGA GAAAAGAAAT ACCCAAACAA GAATTTTTGG CTACTTTTGT TTCTTTTTGG TAATATTTGA TTTGACCCTT
TTATTTTTAC TCTTTTTCTC TCGTGTTCTA TAAGAAAAAG AAAAAACATC ATGGATGAAT TGATGAGATG GTGTTTCGCT
TTCCCAAAAT TTGAGAAAAT GAAGAAAAAG CGTAGAAGAT TCTTCATCCA AGATCTAGAT CAGTGAACCT TGTTACATTC
TTCCAAGAGC TTGTGTTCAT GGCAAATTTT ATTTTCCTTG GTTACTAAAA AATTATTTTC ATATAAA

>Vigan.09G018700.01
ATGGCTACTT TTCCTTCTCC CCCTTCACCT TCTTCTTCTT CCTCAATTCC TTCTCCAAGA TCTAGCATGT TTTACTATGC
TAGAAGTGAA AACCACTATG AGGAACCTCA CTTCCTTCAA GCTTGTTTTC TTTGCAGAAA ACCACTAGGC CAAAACCGTG
ACATCTTCAT GTACAGAGGG AACACACCAT TTTGCAGCAA AGATGCAGGC AGGAGCAAAT AG

>Vigan.09G018700.01
MATFPSPPSP SSSSSIPSPR SSMFYYARSE NHYEEPHFLQ ACFLCRKPLG QNRDIFMYRG NTPFCSKDAG RSK*