GBrowse Details

Vigan.09G010500.01

Basic Information:
Name: Vigan.09G010500.01
Multiple alignment
Variant Information
Position: Chr09:1008603..1010665 (- strand)
Length: 2063
Functional Information:
Description: Similar to Chloroplast oxygen-evolving enhancer protein. [V5N8G5, Phaseolus vulgaris]
GO: Biological Process: photosynthesis (GO:0015979)
Cellular Component: photosystem II (GO:0009523)
Cellular Component: photosystem II oxygen evolving complex (GO:0009654)
Cellular Component: extrinsic to membrane (GO:0019898)
Molecular Function: calcium ion binding (GO:0005509)
InterPro: Photosystem II PsbQ, oxygen evolving complex (IPR008797)
PsbQ-like domain (IPR023222)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.56,0.77,289.08,2797.55,0.99,559.13,11.81,365.29
Arabidopsis thaliana homolog: AT4G05180.1
Automatic updates:
Name: NM_001249612 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306034 (LOC100306034), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:1008603..1008717 (- strand)
Length: 115
Type: three_prime_UTR
Position: Chr09:1008718..1008816 (- strand)
Length: 99
Type: CDS
Position: Chr09:1009619..1009914 (- strand)
Length: 296
Type: CDS
Position: Chr09:1010225..1010498 (- strand)
Length: 274
Type: CDS
Position: Chr09:1010499..1010665 (- strand)
Length: 167
Type: five_prime_UTR

>Vigan.09G010500.01 class=Sequence position=Chr09:1008603..1010665 (- strand)
CCAAGTTATC CAAGTGGAAA ATGTTGAGAT AAGGCACTCT CCACAGCCAC TCATAATCAC AGACACAGCA ATCACCATAC
AGAAACCAAA ACTATATTGT CACATTCCAG AAAAGCAAGC ACAAAGGCAA AGAAAGAACT TGGCTAGCTA AGGATCAAGC
AAATACAATG GCTCAAGCAA TGGCATCAAT GGCAGGTAGC CTTCAACTCA GTGGCTCCAC ACGTTTGCAT GCCAAAAGGG
TGTCTTCAGT CACACGTGCG GGATTCACAG TTAGAGCACA ACATCAGCAA GAACAAGTGA GTGGTGATGC TCAGAGCAGC
CGTAGGACAG TGCTTTCTCT TGTTGCTGCT GGTTTGGCCA CTGGCTCCTT TGTTCAAGCT GTTCTTGCTG ATGCCAAATC
CATCAAAGTT GGACCACCTC CTCCACCTTC TGGTGGATTG CGTAAGTCTC TCTTTCTCTC TCTCACCATC ATAGGGTTAG
AGGTATATAT GTAGCATAGG AGAGTAAGTT TTGAACATAA AATAGGTCAT GCATGTTGCA GTAAATGATG AGATATGAAA
AATTGAAATG GGTAGAAAAG TTTGTGGTAG ATTTTAGTAG ATTTCATTCA TGATAAAGGG TTGGAGCCAA AGACAATGAA
AACAAAACAA AACAAAACAA AAGAATGGGG CAATTAAAGT GACATGAAGA AAGGTTTTTG AAGATATATA TATAATTATA
ACGATGGTGG GTGTGTGATG GAATATGGCA GCTGGAACCT TGAACTCAGA TGAAGCAAGA GACCTTGATC TGCCACTGAA
AGATAGGTTC TTCCTTCAAC CACTGTCTCC TAGCGAGGCT GCACAAAGGG CAAAGGAATC AGCCAAAGAA ATTGTTGCTG
TTAAGTCTTT AATAGAAAAG AAGGCTTGGC CATATGTTCA GAATGATCTG CGTCTCAGGG CTGAGTATCT GCGGTTTGAT
CTCAACACTG TCATTGCTGC AAAGTCTAAG GATGAGAAGA AATCACTCAA GGAACTCACG GGCAAGCTCT ACGAGAATAT
CAGCAATGTA AGTTCAAAAA CACTACAAAT CTTGTTCTAA GTGTTTTCTC ATCCGATTTG AAGTTTTTTT CTTGAATAAT
TTACACAGTA AAGAGTTCTT TATATACTGA GGTCAAATTC TAATCTGATA GAAAAATAGC ACGACTGTAT CTATGGTTTA
AAGGGATAAA GGAGATACTT AAGTCTTTAG TTCTTCATCA ATTGGGAAAA ACGTAGATGC AAGTCTTTCA ATTTGGATTT
TCTGTTGAGC TTTTGGTATT GTTTATCTGT TTTGCTTTTA AAATATACTG ATATACACTT ATTTTGATGT TTTAAAACTT
ATTACAAAAA TTTTAACATA CCAAAATCAA TGTATTTTGA AAGCTCAACA GGATAACTAC ACCAGAAAAA CAGCAGAATC
TGCAGAATAT GAACTCCAAT CTTTGTATAC TTTTGATGTT CTTCAGCAAT AGAGTTTCTG CTAAGTTTTT AGTATTATTT
CTCAGTTGTG CTTTCAAATG CTTTCAAAAT ACACTGAAAT TTTAAAACAT GTTAAAATAC TTTTAATATA CCAAAGCTCA
GCAGAATAAC AGCACCAGAA AAACAGCAGA ATCTGCAGGA TATGAACTCC AAATCTTTGT ATACTTTTGA TGTTCTTCAG
CAGTAGAGTT TATTCTTGAT GATTTACACA GTAAATGTTT GCATGAAATC CGTAATACTC TAACTGAAAT TGAAAAATAG
TATGAAAAAC AAATGAATTT TGTGCTTATG AATTTAGGAT TGAGGAAGTT TCAGAGTGGT AACAAGAGTT TTTGATTTTT
GTTTGGCAGC TGGATCATGC AGCAAAAATT AAGAGCAGCC CAGAAGCAGA GAAGTACTAT GCTGCTACTG TTTCTACTCT
GAATGATGTT CTTGCGAAGC TTGGTTAATG TGATTAGTTT CTTGCTTTTT CTTGTGTAAG CTTTTGTCCA TGATTTTCTC
AGACACTTTG TTGACTGCTA TTTTAAGAAA ATCAAATGAT GAGAGAAAAT TTTCTATAAA TAA

>Vigan.09G010500.01
CCAAGTTATC CAAGTGGAAA ATGTTGAGAT AAGGCACTCT CCACAGCCAC TCATAATCAC AGACACAGCA ATCACCATAC
AGAAACCAAA ACTATATTGT CACATTCCAG AAAAGCAAGC ACAAAGGCAA AGAAAGAACT TGGCTAGCTA AGGATCAAGC
AAATACAATG GCTCAAGCAA TGGCATCAAT GGCAGGTAGC CTTCAACTCA GTGGCTCCAC ACGTTTGCAT GCCAAAAGGG
TGTCTTCAGT CACACGTGCG GGATTCACAG TTAGAGCACA ACATCAGCAA GAACAAGTGA GTGGTGATGC TCAGAGCAGC
CGTAGGACAG TGCTTTCTCT TGTTGCTGCT GGTTTGGCCA CTGGCTCCTT TGTTCAAGCT GTTCTTGCTG ATGCCAAATC
CATCAAAGTT GGACCACCTC CTCCACCTTC TGGTGGATTG CCTGGAACCT TGAACTCAGA TGAAGCAAGA GACCTTGATC
TGCCACTGAA AGATAGGTTC TTCCTTCAAC CACTGTCTCC TAGCGAGGCT GCACAAAGGG CAAAGGAATC AGCCAAAGAA
ATTGTTGCTG TTAAGTCTTT AATAGAAAAG AAGGCTTGGC CATATGTTCA GAATGATCTG CGTCTCAGGG CTGAGTATCT
GCGGTTTGAT CTCAACACTG TCATTGCTGC AAAGTCTAAG GATGAGAAGA AATCACTCAA GGAACTCACG GGCAAGCTCT
ACGAGAATAT CAGCAATCTG GATCATGCAG CAAAAATTAA GAGCAGCCCA GAAGCAGAGA AGTACTATGC TGCTACTGTT
TCTACTCTGA ATGATGTTCT TGCGAAGCTT GGTTAATGTG ATTAGTTTCT TGCTTTTTCT TGTGTAAGCT TTTGTCCATG
ATTTTCTCAG ACACTTTGTT GACTGCTATT TTAAGAAAAT CAAATGATGA GAGAAAATTT TCTATAAATA A

>Vigan.09G010500.01
ATGGCTCAAG CAATGGCATC AATGGCAGGT AGCCTTCAAC TCAGTGGCTC CACACGTTTG CATGCCAAAA GGGTGTCTTC
AGTCACACGT GCGGGATTCA CAGTTAGAGC ACAACATCAG CAAGAACAAG TGAGTGGTGA TGCTCAGAGC AGCCGTAGGA
CAGTGCTTTC TCTTGTTGCT GCTGGTTTGG CCACTGGCTC CTTTGTTCAA GCTGTTCTTG CTGATGCCAA ATCCATCAAA
GTTGGACCAC CTCCTCCACC TTCTGGTGGA TTGCCTGGAA CCTTGAACTC AGATGAAGCA AGAGACCTTG ATCTGCCACT
GAAAGATAGG TTCTTCCTTC AACCACTGTC TCCTAGCGAG GCTGCACAAA GGGCAAAGGA ATCAGCCAAA GAAATTGTTG
CTGTTAAGTC TTTAATAGAA AAGAAGGCTT GGCCATATGT TCAGAATGAT CTGCGTCTCA GGGCTGAGTA TCTGCGGTTT
GATCTCAACA CTGTCATTGC TGCAAAGTCT AAGGATGAGA AGAAATCACT CAAGGAACTC ACGGGCAAGC TCTACGAGAA
TATCAGCAAT CTGGATCATG CAGCAAAAAT TAAGAGCAGC CCAGAAGCAG AGAAGTACTA TGCTGCTACT GTTTCTACTC
TGAATGATGT TCTTGCGAAG CTTGGTTAA

>Vigan.09G010500.01
MAQAMASMAG SLQLSGSTRL HAKRVSSVTR AGFTVRAQHQ QEQVSGDAQS SRRTVLSLVA AGLATGSFVQ AVLADAKSIK
VGPPPPPSGG LPGTLNSDEA RDLDLPLKDR FFLQPLSPSE AAQRAKESAK EIVAVKSLIE KKAWPYVQND LRLRAEYLRF
DLNTVIAAKS KDEKKSLKEL TGKLYENISN LDHAAKIKSS PEAEKYYAAT VSTLNDVLAK LG*