GBrowse Details

Vigan.09G002200.01

Basic Information:
Name: Vigan.09G002200.01
Multiple alignment
Variant Information
Position: Chr09:245273..248443 (- strand)
Length: 3171
Functional Information:
Description: Similar to uncharacterized protein. [A2XZX6, Oryza sativa subsp. indica]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.62,4.23,4.23,3.14,5.44,8.13,5.97,3.48
Arabidopsis thaliana homolog: AT3G51010.1
Automatic updates:
Name: NM_001249726 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527226 (LOC100527226), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250295 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527264 (LOC100527264), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:245273..245811 (- strand)
Length: 539
Type: three_prime_UTR
Position: Chr09:245812..245967 (- strand)
Length: 156
Type: CDS
Position: Chr09:247145..247266 (- strand)
Length: 122
Type: CDS
Position: Chr09:247334..247595 (- strand)
Length: 262
Type: CDS
Position: Chr09:247596..248443 (- strand)
Length: 848
Type: five_prime_UTR

>Vigan.09G002200.01 class=Sequence position=Chr09:245273..248443 (- strand)
AAAGTGAATT TAGGCCTAAC ATAACCTAGT AAAACCAATT TGTTAGGTAA AGTTTGCATT CACTTATGTA TTGAAATTAG
ACTATATATG TAATTGATAT GAATCTCCAA AAGTAAACTT AGAACAATTT AGTGGTAATA ATGCCAATCC ATTTCCTTCT
GGAGATCACT TTACATGTCA CTAAAAAATA ATTACAACCT TTAGAAAGGA GAAAAGATGA ATTTGCTATT ACTTGCTCCC
AGCTGCCATT TCATGTATGC TTAACAATTC AATAATCTGC TACTATCATT GGAATTTGAC TGCAATTGTT GGTCATTGCT
GATAGCAGCA CATAATTACA AGGAAATGTA TCATTTCCTT TTCATACCCT TCCATATATG TTTTCTGCAA CATAGACTTT
CACAATCATA TTATTTTCCA CTGAACGAGC ATCACTCAGT ATCCCTTTGT GTTATTGTCA GTTATTCTAA TTGGACATAA
AATGTATTTA TAGTTTGATG CGTCATGTTG AACACTTAAA AAGCATTGTA ATTATTCTAA ATTGGTCTTA AATAGTTTTG
GTGCAACATT ATATTTTTCG ATTGCACTAT GAAATTAGCA TGTTTAATGC TGAAATTTTG CATTGTTGTA TTTGTGTTGT
TTACTATCCT GTAAAATTTC ACTAAAATTC TGAGTATAGC TAGCAAAGAT CTTGTTTTCT CGAATTATGA TTGCAGTCTG
CATCTCTGAT AACTCAGAAG TTCACTATCT GGTGCTTTCT ATGGATAGAT TTATTTGAAG CGTGTATTAT TAAGAAGAAA
AGTACATGGG TTTCTTTGCT CTGCACGTGA ATTAATCCTT TCTATTAAAT GCAGAGAGAA ATGGGAATTG CAGGAGTGCT
AAGGAACATT GTTCGCCCTC TATCACTTGC ATCATCAAGA ACCTTGACCT CTCGAATGTG CAACAATGCT TCGATGGCCT
TGTTTTGTCC TGTTTCGCCA TCTCCCTGCA AACCTCCCCA GTGGACTCTT CCCCTTTTGA ATCACTTCCA TAGCTTGACA
GACACTCGCT TCCCAAAGAG ACGACCCTCT GATAAACCTC GTCGAAAGAG GGCCAGCCTG AGACCGTCTG GTGTGTGCAT
TTTTATGCTT TTGATTTTGA ATTTGATTCA AATTTTGAGA CAATTTATGT GGTTCAGGGC CTTACGCTTG GGTTCAACAT
ACACCTGGCG AACCCATACT TCCAAATAAG CCCAATGAGG GGAGTGTCAA AAGGAGAAAT GAGAAGAAAC GCATAAGGCT
GCGCCGTGCT TTTATATTGG TGCGCTCTCC CCTTACCTTG TGCAAATTGA ATTTTGGAGA CTTCATGAAT GTTGAGTGTG
TTTTTTGTTT ACATTTGAAG AAAATGAAAA CTCTTTTCTA AACGTAATAA TGCACTGAAA AGAGGGAGGG GGATGGGCAA
TTGGAAATGA AGCTCGATGA CACAGGATAG GAAAATTCAT GGTACTTGCT GATTGTGTTA GAAATTTGTT ATTTTGAATT
AGTTTCATTT CATGTTGTAG GAGTCATCTT GTTTAATGAT GAAGAGAATA AACCTAGTTG GATAAAGCTA CTCTGTTTGT
TGCTATGAGA GTCATCTTAT TTAATGGTGA AGAGGACTGT TCAATATTCA ATAAGTTCTA TGGGATTTCT AGCAACGTAA
TTTTTAAATG TCTGTGTTAG AACTTCGTGA ATGTGTATAG TATTGTTAGG TGAGTGAACA ATTATGGGAG ATATACAGGA
TCTAGTCATT TGTCACTAAA GCTCAAACAA GTCCATGTGA ATCCAGTAAT TCTTAGCCCT TGAAATTACT AACTTTTAGC
CCTTGAAAGC ATCTGTCTTT TTTTTTTTTT AATTCATGGA CAGCACATTT TTTTAACTAT ATCCCTTTAG TTCTTTTGAG
GACTCCATTC TGTCATTTAA TCTTTTAACC TTCACGAACA TGGGATATGA AAGGTACTAT TATATTGTGC TAGAGTAGAC
TGTGTGCAAG TCTTAAGTAC AACTATATTT GGTGGCAAGT TTATTGCTAT TGAATGTCAA ACAGAGTTCC ATGGACAAAA
ACTATAGCCA TAATAATCAC CATTTGGAAA TTCAAATTTT GTAAATGAGG TGAACTTTTG TCTGTTTAAC TGTATTAGAC
CATCATGTGC TTATTCATTG AAAATAACTC TGGAATTTAT CGGGATTCTT TGGCAAATAA TTTACTATCA AGTGTCAATC
AAAGTTCTAA ATTTGTTAAC GCTAACTGGA GTTGGTTATG ATCGTTTTTA TCTGTCAGTA GGTGCTTATT TTTAGCTATT
AAGGAGGTTT GAGCGGTTTT TTTTCAGAAC TTACCAAAAT ACCGGTGTTG TGTTTGAATT GATTTTTTGT TTTGTAAACT
AGAAGTTTCT CTAGCTATGC TATCAGTCCA AATATTTGTA TTGGAATAAA TGTTGAATGT GAACTCTTGC ATACAGGCGG
AGAGGAAGAA AAGGAAAGCT CAGCTGCAAG AGGCTAATAG GAAGAAAAAT ATTCAGAGGG TAGAACGTAA AATGGCTGCA
GTTGCAAGGG AAAGGGAGTG GGCAGAAAGA CTGGCTGAGT TGCAGCGACT TGAGGCACAG AAGACAATCT AATGGAATTT
GTTAGGACCT ATCTGCATTT GGTAACACTG GTTGTGCACT CTATACACTA TTTCTATATT TTCATTATGT TCAGAAACAT
GAAAGTCTGA ATCCCCACAT TTTGTTGTTG AAAGTGAGGC TGACATTTTT TTCTTGAAAC AAAGATGAGA AAAATAAAAG
AAACCTGGTG TGGGTAGATC AGTGTGCACA TGCTAATAAA TTTAGAGTCT ACAACATTAG GGTGGAAATA TCTGTTGGGA
AGAATAATGA GAAGGAGCGA GGAAAGTAGA ACTGGATTTG GTGTGATGAA GGGCATCCAA AGGAAGGTGG ATGGAAGGGG
AGGGCTTATC CAGAATGTAT TATCCATTTT GGCATATACC TGGACCAAGT CTCTCCTCGT GATTTCATTT AGGTCTGCTC
AGACCAACCA CCATAAAAGA TTGAAAGGAA TACAAAGAGA GATTCAGAGC GAATATTCAA AGGAAAGGAA TAGAAATAGA
AACAGATTTT GAGTTCCAAG GTTGAAATTA TTTAGATGAA GGGAAAGAAA G

>Vigan.09G002200.01
AAAGTGAATT TAGGCCTAAC ATAACCTAGT AAAACCAATT TGTTAGGTAA AGTTTGCATT CACTTATGTA TTGAAATTAG
ACTATATATG TAATTGATAT GAATCTCCAA AAGTAAACTT AGAACAATTT AGTGGTAATA ATGCCAATCC ATTTCCTTCT
GGAGATCACT TTACATGTCA CTAAAAAATA ATTACAACCT TTAGAAAGGA GAAAAGATGA ATTTGCTATT ACTTGCTCCC
AGCTGCCATT TCATGTATGC TTAACAATTC AATAATCTGC TACTATCATT GGAATTTGAC TGCAATTGTT GGTCATTGCT
GATAGCAGCA CATAATTACA AGGAAATGTA TCATTTCCTT TTCATACCCT TCCATATATG TTTTCTGCAA CATAGACTTT
CACAATCATA TTATTTTCCA CTGAACGAGC ATCACTCAGT ATCCCTTTGT GTTATTGTCA GTTATTCTAA TTGGACATAA
AATGTATTTA TAGTTTGATG CGTCATGTTG AACACTTAAA AAGCATTGTA ATTATTCTAA ATTGGTCTTA AATAGTTTTG
GTGCAACATT ATATTTTTCG ATTGCACTAT GAAATTAGCA TGTTTAATGC TGAAATTTTG CATTGTTGTA TTTGTGTTGT
TTACTATCCT GTAAAATTTC ACTAAAATTC TGAGTATAGC TAGCAAAGAT CTTGTTTTCT CGAATTATGA TTGCAGTCTG
CATCTCTGAT AACTCAGAAG TTCACTATCT GGTGCTTTCT ATGGATAGAT TTATTTGAAG CGTGTATTAT TAAGAAGAAA
AGTACATGGG TTTCTTTGCT CTGCACGTGA ATTAATCCTT TCTATTAAAT GCAGAGAGAA ATGGGAATTG CAGGAGTGCT
AAGGAACATT GTTCGCCCTC TATCACTTGC ATCATCAAGA ACCTTGACCT CTCGAATGTG CAACAATGCT TCGATGGCCT
TGTTTTGTCC TGTTTCGCCA TCTCCCTGCA AACCTCCCCA GTGGACTCTT CCCCTTTTGA ATCACTTCCA TAGCTTGACA
GACACTCGCT TCCCAAAGAG ACGACCCTCT GATAAACCTC GTCGAAAGAG GGCCAGCCTG AGACCGTCTG GGCCTTACGC
TTGGGTTCAA CATACACCTG GCGAACCCAT ACTTCCAAAT AAGCCCAATG AGGGGAGTGT CAAAAGGAGA AATGAGAAGA
AACGCATAAG GCTGCGCCGT GCTTTTATAT TGGCGGAGAG GAAGAAAAGG AAAGCTCAGC TGCAAGAGGC TAATAGGAAG
AAAAATATTC AGAGGGTAGA ACGTAAAATG GCTGCAGTTG CAAGGGAAAG GGAGTGGGCA GAAAGACTGG CTGAGTTGCA
GCGACTTGAG GCACAGAAGA CAATCTAATG GAATTTGTTA GGACCTATCT GCATTTGGTA ACACTGGTTG TGCACTCTAT
ACACTATTTC TATATTTTCA TTATGTTCAG AAACATGAAA GTCTGAATCC CCACATTTTG TTGTTGAAAG TGAGGCTGAC
ATTTTTTTCT TGAAACAAAG ATGAGAAAAA TAAAAGAAAC CTGGTGTGGG TAGATCAGTG TGCACATGCT AATAAATTTA
GAGTCTACAA CATTAGGGTG GAAATATCTG TTGGGAAGAA TAATGAGAAG GAGCGAGGAA AGTAGAACTG GATTTGGTGT
GATGAAGGGC ATCCAAAGGA AGGTGGATGG AAGGGGAGGG CTTATCCAGA ATGTATTATC CATTTTGGCA TATACCTGGA
CCAAGTCTCT CCTCGTGATT TCATTTAGGT CTGCTCAGAC CAACCACCAT AAAAGATTGA AAGGAATACA AAGAGAGATT
CAGAGCGAAT ATTCAAAGGA AAGGAATAGA AATAGAAACA GATTTTGAGT TCCAAGGTTG AAATTATTTA GATGAAGGGA
AAGAAAG

>Vigan.09G002200.01
ATGCAGAGAG AAATGGGAAT TGCAGGAGTG CTAAGGAACA TTGTTCGCCC TCTATCACTT GCATCATCAA GAACCTTGAC
CTCTCGAATG TGCAACAATG CTTCGATGGC CTTGTTTTGT CCTGTTTCGC CATCTCCCTG CAAACCTCCC CAGTGGACTC
TTCCCCTTTT GAATCACTTC CATAGCTTGA CAGACACTCG CTTCCCAAAG AGACGACCCT CTGATAAACC TCGTCGAAAG
AGGGCCAGCC TGAGACCGTC TGGGCCTTAC GCTTGGGTTC AACATACACC TGGCGAACCC ATACTTCCAA ATAAGCCCAA
TGAGGGGAGT GTCAAAAGGA GAAATGAGAA GAAACGCATA AGGCTGCGCC GTGCTTTTAT ATTGGCGGAG AGGAAGAAAA
GGAAAGCTCA GCTGCAAGAG GCTAATAGGA AGAAAAATAT TCAGAGGGTA GAACGTAAAA TGGCTGCAGT TGCAAGGGAA
AGGGAGTGGG CAGAAAGACT GGCTGAGTTG CAGCGACTTG AGGCACAGAA GACAATCTAA 

>Vigan.09G002200.01
MQREMGIAGV LRNIVRPLSL ASSRTLTSRM CNNASMALFC PVSPSPCKPP QWTLPLLNHF HSLTDTRFPK RRPSDKPRRK
RASLRPSGPY AWVQHTPGEP ILPNKPNEGS VKRRNEKKRI RLRRAFILAE RKKRKAQLQE ANRKKNIQRV ERKMAAVARE
REWAERLAEL QRLEAQKTI*