GBrowse Details

Vigan.09G000300.01

Basic Information:
Name: Vigan.09G000300.01
Multiple alignment
Variant Information
Position: Chr09:41732..43011 (+ strand)
Length: 1280
Functional Information:
Description: Similar to ethylene-responsive transcription factor ERF003-like. [XP_004515544.1, Cicer arietinum]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
InterPro: AP2/ERF domain (IPR001471)
DNA-binding domain (IPR016177)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.92,0.10,0.03,119.37,0.00,5.00,0.07
Arabidopsis thaliana homolog: AT5G25190.1
Automatic updates:
Name: NM_001248106 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527365 (LOC100527365), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001253950 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ethylene-responsive transcription factor ERF003-like (LOC100777851), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:41732..42106 (+ strand)
Length: 375
Type: five_prime_UTR
Position: Chr09:42107..42189 (+ strand)
Length: 83
Type: CDS
Position: Chr09:42363..42864 (+ strand)
Length: 502
Type: CDS
Position: Chr09:42865..43011 (+ strand)
Length: 147
Type: three_prime_UTR

>Vigan.09G000300.01 class=Sequence position=Chr09:41732..43011 (+ strand)
ATTAACTATT AACAAATGGA TATTGTTAAA TTTACATTAC AAAACCAAAA TAAATAAAAA TGATTTTTTT TTTCAAAAAG
AATAGATATT ATGATATTTT GTTTATAAAA AAATAATAGC AGTCCTTCTC CAAGAACTTT ACCTGCATCA AAGGGGTGAA
ACATTATGTG TGGGTCATTT ATACTGATAG AGGACAAAAA GACTAAAGAA TTTTGTATAA ATCTTGAAAA GCAGTGTATA
AATATATCTA ATAGAGCTCC TTCACCTTCA CTTTACTTCA CTGCAGTCAC CTTCCTGTAT GTTTGCTTCC CATTCTGAAA
GACACTTCAC GAGCTTGTTT AGGTATTAAA ATTTCACGTT CTCTTTTTCT CAATCATGGC CAGACCCCAA CAACGCTATC
GTGGAGTCCG CCAAAGGCAC TGGGGCTCTT GGGTCTCTGA AATTCGCCAC CCTTTATTGT AATTCACTCG TGATAACATC
ACACCATATC ATAACTTCAC TTTTATTCTT TGTTAAAGAT CTTTTCAACT CCTTTACGTG TGTTATAGCA ATTTACTACT
GCATTAAGTA CTTAGTAATT GATATAACTC TTGCACACGG TTTATGTTAA TTTTTTTTTT TTGGACCACA GGAAAACTAG
AATTTGGCTT GGAACCTTTG AAACGGCTGA AGATGCAGCG AGAGCATATG ATGAAGCAGC TAGACTCATG TGTGGACCAA
AAGCACGCAC CAATTTCCCA TACAACCCCA ATGAACCACA CTCATCCTCA TCCAAGCTTC TCTCTGCCAC TTTAACGGCT
AAGTTACACA AGTGTCACAT GGCCTCACTT TCACTTCAAA TGGCCAAACA AAAATCACCA CAAAACAAAG ATCCTCAACC
CTCAGAAGGG TCCAATCCAT TTGCCTCTGC CAATGTCATT GTTGGATCAA GCGCTGAAAC TGGTTTTAGA TGGACGGAGA
ATAGACACGA GGAGTTAAGG TGGCTCGAAG GGAATTGGGT TAGCGTGGCA GGCCAAGTTG AAGTTTCCCA TCAGCAATTT
CAACCTGTTC TTGAAGATGA TCACATAGAG CAGATGATTC AAGAGTTGCT TGATTATGGA TCAATTGAGC TTTGTTCTGT
TTGCTCAACC TAGCTCTAAA GTATTGCGTT TAAAAAACAT TCTGCGATGA CAGTGTCTTC GGCCGTAATA GTGAAAATGT
GACCGTATCA GTCGTATTTA CTCATCATTT TCAACAATAT CAAAGAATGT AATGAGACCG CAACTGATTT TTAAAACCCT


>Vigan.09G000300.01
ATTAACTATT AACAAATGGA TATTGTTAAA TTTACATTAC AAAACCAAAA TAAATAAAAA TGATTTTTTT TTTCAAAAAG
AATAGATATT ATGATATTTT GTTTATAAAA AAATAATAGC AGTCCTTCTC CAAGAACTTT ACCTGCATCA AAGGGGTGAA
ACATTATGTG TGGGTCATTT ATACTGATAG AGGACAAAAA GACTAAAGAA TTTTGTATAA ATCTTGAAAA GCAGTGTATA
AATATATCTA ATAGAGCTCC TTCACCTTCA CTTTACTTCA CTGCAGTCAC CTTCCTGTAT GTTTGCTTCC CATTCTGAAA
GACACTTCAC GAGCTTGTTT AGGTATTAAA ATTTCACGTT CTCTTTTTCT CAATCATGGC CAGACCCCAA CAACGCTATC
GTGGAGTCCG CCAAAGGCAC TGGGGCTCTT GGGTCTCTGA AATTCGCCAC CCTTTATTGA AAACTAGAAT TTGGCTTGGA
ACCTTTGAAA CGGCTGAAGA TGCAGCGAGA GCATATGATG AAGCAGCTAG ACTCATGTGT GGACCAAAAG CACGCACCAA
TTTCCCATAC AACCCCAATG AACCACACTC ATCCTCATCC AAGCTTCTCT CTGCCACTTT AACGGCTAAG TTACACAAGT
GTCACATGGC CTCACTTTCA CTTCAAATGG CCAAACAAAA ATCACCACAA AACAAAGATC CTCAACCCTC AGAAGGGTCC
AATCCATTTG CCTCTGCCAA TGTCATTGTT GGATCAAGCG CTGAAACTGG TTTTAGATGG ACGGAGAATA GACACGAGGA
GTTAAGGTGG CTCGAAGGGA ATTGGGTTAG CGTGGCAGGC CAAGTTGAAG TTTCCCATCA GCAATTTCAA CCTGTTCTTG
AAGATGATCA CATAGAGCAG ATGATTCAAG AGTTGCTTGA TTATGGATCA ATTGAGCTTT GTTCTGTTTG CTCAACCTAG
CTCTAAAGTA TTGCGTTTAA AAAACATTCT GCGATGACAG TGTCTTCGGC CGTAATAGTG AAAATGTGAC CGTATCAGTC
GTATTTACTC ATCATTTTCA ACAATATCAA AGAATGTAAT GAGACCGCAA CTGATTTTTA AAACCCT

>Vigan.09G000300.01
ATGGCCAGAC CCCAACAACG CTATCGTGGA GTCCGCCAAA GGCACTGGGG CTCTTGGGTC TCTGAAATTC GCCACCCTTT
ATTGAAAACT AGAATTTGGC TTGGAACCTT TGAAACGGCT GAAGATGCAG CGAGAGCATA TGATGAAGCA GCTAGACTCA
TGTGTGGACC AAAAGCACGC ACCAATTTCC CATACAACCC CAATGAACCA CACTCATCCT CATCCAAGCT TCTCTCTGCC
ACTTTAACGG CTAAGTTACA CAAGTGTCAC ATGGCCTCAC TTTCACTTCA AATGGCCAAA CAAAAATCAC CACAAAACAA
AGATCCTCAA CCCTCAGAAG GGTCCAATCC ATTTGCCTCT GCCAATGTCA TTGTTGGATC AAGCGCTGAA ACTGGTTTTA
GATGGACGGA GAATAGACAC GAGGAGTTAA GGTGGCTCGA AGGGAATTGG GTTAGCGTGG CAGGCCAAGT TGAAGTTTCC
CATCAGCAAT TTCAACCTGT TCTTGAAGAT GATCACATAG AGCAGATGAT TCAAGAGTTG CTTGATTATG GATCAATTGA
GCTTTGTTCT GTTTGCTCAA CCTAG

>Vigan.09G000300.01
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPKAR TNFPYNPNEP HSSSSKLLSA
TLTAKLHKCH MASLSLQMAK QKSPQNKDPQ PSEGSNPFAS ANVIVGSSAE TGFRWTENRH EELRWLEGNW VSVAGQVEVS
HQQFQPVLED DHIEQMIQEL LDYGSIELCS VCST*