GBrowse Details

Vigan.08G368300.01

Basic Information:
Name: Vigan.08G368300.01
Multiple alignment
Variant Information
Position: Chr08:46712329..46715553 (+ strand)
Length: 3225
Functional Information:
Description: Similar to Forisome. [A8C976, Canavalia gladiata]
InterPro: Sieve element occlusion, N-terminal (IPR027942)
Sieve element occlusion, C-terminal (IPR027944)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.08,1.43,19.76,5.46,0.21,11.11,2.54,52.55
Automatic updates:
Name: NM_001254693 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max sieve element occlusion by forisomes 3 (SEO-F3), mRNA.
PubMed ID: 20932300 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:46712329..46712366 (+ strand)
Length: 38
Type: five_prime_UTR
Position: Chr08:46712367..46712555 (+ strand)
Length: 189
Type: CDS
Position: Chr08:46712689..46712778 (+ strand)
Length: 90
Type: CDS
Position: Chr08:46713219..46713631 (+ strand)
Length: 413
Type: CDS
Position: Chr08:46713710..46713798 (+ strand)
Length: 89
Type: CDS
Position: Chr08:46713914..46714047 (+ strand)
Length: 134
Type: CDS
Position: Chr08:46714157..46714636 (+ strand)
Length: 480
Type: CDS
Position: Chr08:46714721..46715326 (+ strand)
Length: 606
Type: CDS
Position: Chr08:46715327..46715553 (+ strand)
Length: 227
Type: three_prime_UTR

>Vigan.08G368300.01 class=Sequence position=Chr08:46712329..46715553 (+ strand)
CATTTCCATC CAAATTAATT AACGTACGAA ATAGCAACAT GTCGATCTCT AAACCTGAAC AAAAGCCTCT TCTGCCAAAC
CCATTTCAGT TGAGTGACAT TGAGCTCATT GAGAAAGTGT ACGCATCCCA CACTTACGAT GACGAAGTGT TTGATAGTGA
GCCCCTTTTC AACGTGGTGT CCAGCGTTAT CAAGCTATCA AGTAGAGTTG TAGGGGCTAT TCTCAAGGTA AATTAACAAA
AATCAAATTC ATAACTTATA AAATCTCTTT TTTATGTTTT ATAACTTCCT TTTCTTAAGT CATCAGTAAT TATAGCTTCC
AGTGTTCAGC TACCTGACTA TAATTTTGGT TGTCATGCAG ATCGATGAGC AAAATGGTTT TGCAGGAAAT GCTATTGCCA
TAAACATTTC CAAACCAGAA TTCTCAAAAC TGAAGCTCAT TTCCTGTCAT GTATTTTGTC GCTTACTCCA TTTTATTAGA
AATCATATAT ATCGAGTTTT AATTATGATT TGTTTGCGAA GAAATCACCC CATTTGAATA TACTTAGGAA CATAGTAGCA
TATTTTCTAA TATACACTTC ATGCATACAC ATGTTCTATT AAAGCAAAAC TTAAATGTAG TATTACAAGG GTTGTTAAGA
CCATTTTCTG TCAGAATTAA AACGTTAGAT GGATGATTTG TGTGATAAAA GAATTCACTA ATGTTTTTTG TATACTATTT
AAAGATAAAA CTATATGTAT TTTAGTTATC TGTTAAAATT ATTAAAAAAT GTAAATTATA AGATCATTTC TAAGTGAAAT
ATGAAACCTG CATGTTTTTA AATTTTAATA AACTTTAGTT GATACAGCAA TGAATTAGAA AATGTTTTTA GCAATTGATT
ATGGTGACAG ATGATAACAA CCCCTTGGGG GATGGAGAAC GCACACCAAA CAACCCTAAG GATTCTTCAA CAACTGAGAA
CCTTCTCGTG GGATGCAAAA GTGTTGGTAG CTCTAGCCGG TTTCGCTTTG GAGTATGGAA ACTTCTGGAA CCTTTATCAG
GCATCAGACC CTCTGGGGAA CTCGTTGAAA GTGCTGAGTC AGGTTCAGCA TAGACAGCTT CCGGTGGTTG ATCTGAACTC
AACAGTGAAG CTGGTGCTGG AGGCTGTTGA GAAGATCAGT CGTTGGGGAA CCTTGTCTGC TGATGAAAGC TATGACACCG
AGGATGTGCC TGCTTTGTCG GATGCATTGG AGCAGATCCC CCTTGTTGTT TACTGGGTTG TCGCTTCCCT TGTCGCTTGC
AATAGCAACC TCCAGGGTGT ATCGTAAGTC TTATCTCAAC AAAACATGTT CTTCATGTCA AATGTCGTCG AGTAATTAAT
CCTAAACTTT TTATGTTTCA GGAACTATCC GTTACTGGAA TTTCGTGCCA AACTTTCTCT CGCTCTGGAT GAGTTCGCCA
GGCTACTAGT GATATGCGAG AAGCAAAAAG GTTTTTGTCT GCTCAGAGTT TCTGCATGGT TCCTTCAATA TCATCCTTTT
CATCTAGTTT TTACTTTACT TAAGTGATGA AAAGAAGTTA ACTCGCTAAA ATTTTACTGT TGCAGATCGT GTAGAAGACT
ACCGGAGGCG TAAGAGGAAC TTTAACAAGC CTAAAGACAT TGTAGACTTT TTGAAGCTCT TGATCAGTAA AAATGGCTCT
CAGAACGCTC AAATATACGA TGGCAACGCC AGGAAAGTGG TTCGTATCAT ATTAGTCGTT TCGAGGTTTA ATTCAGTGTA
GAATTATTAT AAGGTCTCAA TCGTCTTACT ATAAATAAAA AACGATGGTT TGTTTTGCTT GTGAATAGAA TGTTGAGGTT
TTCAAGGACA AGTACGTGTT GCTATTCATT TCGGGGTTGG ACAGAATAGA AGATGAGATT CGGCTTCTAA ATTCAATCTA
CGAGGGACTA GTGGAGGATC CGAATGACAA GAGCGGATTC AAGAAAGAGG AGTTCAAGAT CTTGTGGATT CCGATGGAGA
GTGGATGGGG TGATGCGCGG AGGGAGGTGT TCAACACTCT GAAAAGCTAC ATAAAATGGT ACGTGGTGGA GTACGTTGAA
CCCTTGCCAG GAACAAGGCT GATTGAAGAG GATCTAAAGT TCCAGGGTAA ACCTATTCTT CCAGTGGTGA AGCCACAGGG
CGTGCTGCTG AACGATGATG CATTGGACAT CATCTTCGAA TGGGGAATCG ACGCATTCCC TTTCAGAAAA TCGGATGCCT
ACCTACTTGC GCAGAAATGG AAATGGTTCT GGGACGAAGT AAAGAAAACA AATCTTCACG GCATACAGGT AATAAAACCC
CAAAACAAGC TTACCAAGTT TTCTGTACAT TCACCGACTA ACCCTAAAAT TGTTGTGTGT GCGAATGAAT AGGTGAAAGG
TGATAGGTAC GTGTTCATAT ATGGAGGCAG CGACAAGTGG AGCCGAGAAT TCAGTGTGGC AGTGGATAAA ATAAAGAGGC
ACGAAACAAT AAAGAGGGCA GATGCAATAA TAGAGCATTA CCATTTGGGG AAGGACGATC CGAAGATAGT TCCTCGGTTC
TGGATCGGAG TGGAAGGGAA GAGACAGAAA AAGCATTCGG AGAAGTTGGA CTGTGAGATC CAAGAGATTG TAAAGTCTTT
GCTTTGCCTG AAGCAGGACA CGCAGGGATG GGCCATTCTC AGCAAAGGGT CCAACGTGAA GATTTTAGGG CACGCCCAAC
CCATGTATCA GACTGTGGCT GACTTCGAAA AGTGGAAAGA CAGAGTTCTG GTCAAAGAAG GCTTCGACAT TGCCTTCCAA
GAGTACTATG AGACCAAGCG TCATCTTCCT GCTCCTCAAC CATGCGAATT CAACACTCTT GATGTTCTCG CAACCATAAC
ATGCCCTAAT TCCTCTTGTG GACGCGTCAT GGAGGTCACT TCCGTTAACT ACAAGTGCTG CCATGGTGGC AATGTTGCTG
ACCACGCCTT CCCATCTCCG ACAACCCAAA CCTTATAAAC CTCAATTACA ACCTCAGTTT GTTTTGGAGA AACTACGCCA
ACCTGAATTA AGTGTGTTTT TTTTACTATA TATCTATGTT TGCATGCATG TGAGTCTGAA CGACTCGGTC CCTTGCGACC
TCTTCATAAA TAATGCCATA TTTTGTATCT TCTGAGTTAG ATTATTCAAT AAATAATTCC TTCTCCGACC GCATTTCGAA
ATCCTTCCAA TCTTTTAGTA CTTCC

>Vigan.08G368300.01
CATTTCCATC CAAATTAATT AACGTACGAA ATAGCAACAT GTCGATCTCT AAACCTGAAC AAAAGCCTCT TCTGCCAAAC
CCATTTCAGT TGAGTGACAT TGAGCTCATT GAGAAAGTGT ACGCATCCCA CACTTACGAT GACGAAGTGT TTGATAGTGA
GCCCCTTTTC AACGTGGTGT CCAGCGTTAT CAAGCTATCA AGTAGAGTTG TAGGGGCTAT TCTCAAGATC GATGAGCAAA
ATGGTTTTGC AGGAAATGCT ATTGCCATAA ACATTTCCAA ACCAGAATTC TCAAAACTGA AGCTCATTTC CTGTCATATG
ATAACAACCC CTTGGGGGAT GGAGAACGCA CACCAAACAA CCCTAAGGAT TCTTCAACAA CTGAGAACCT TCTCGTGGGA
TGCAAAAGTG TTGGTAGCTC TAGCCGGTTT CGCTTTGGAG TATGGAAACT TCTGGAACCT TTATCAGGCA TCAGACCCTC
TGGGGAACTC GTTGAAAGTG CTGAGTCAGG TTCAGCATAG ACAGCTTCCG GTGGTTGATC TGAACTCAAC AGTGAAGCTG
GTGCTGGAGG CTGTTGAGAA GATCAGTCGT TGGGGAACCT TGTCTGCTGA TGAAAGCTAT GACACCGAGG ATGTGCCTGC
TTTGTCGGAT GCATTGGAGC AGATCCCCCT TGTTGTTTAC TGGGTTGTCG CTTCCCTTGT CGCTTGCAAT AGCAACCTCC
AGGGTGTATC GAACTATCCG TTACTGGAAT TTCGTGCCAA ACTTTCTCTC GCTCTGGATG AGTTCGCCAG GCTACTAGTG
ATATGCGAGA AGCAAAAAGA TCGTGTAGAA GACTACCGGA GGCGTAAGAG GAACTTTAAC AAGCCTAAAG ACATTGTAGA
CTTTTTGAAG CTCTTGATCA GTAAAAATGG CTCTCAGAAC GCTCAAATAT ACGATGGCAA CGCCAGGAAA GTGAATGTTG
AGGTTTTCAA GGACAAGTAC GTGTTGCTAT TCATTTCGGG GTTGGACAGA ATAGAAGATG AGATTCGGCT TCTAAATTCA
ATCTACGAGG GACTAGTGGA GGATCCGAAT GACAAGAGCG GATTCAAGAA AGAGGAGTTC AAGATCTTGT GGATTCCGAT
GGAGAGTGGA TGGGGTGATG CGCGGAGGGA GGTGTTCAAC ACTCTGAAAA GCTACATAAA ATGGTACGTG GTGGAGTACG
TTGAACCCTT GCCAGGAACA AGGCTGATTG AAGAGGATCT AAAGTTCCAG GGTAAACCTA TTCTTCCAGT GGTGAAGCCA
CAGGGCGTGC TGCTGAACGA TGATGCATTG GACATCATCT TCGAATGGGG AATCGACGCA TTCCCTTTCA GAAAATCGGA
TGCCTACCTA CTTGCGCAGA AATGGAAATG GTTCTGGGAC GAAGTAAAGA AAACAAATCT TCACGGCATA CAGGTGAAAG
GTGATAGGTA CGTGTTCATA TATGGAGGCA GCGACAAGTG GAGCCGAGAA TTCAGTGTGG CAGTGGATAA AATAAAGAGG
CACGAAACAA TAAAGAGGGC AGATGCAATA ATAGAGCATT ACCATTTGGG GAAGGACGAT CCGAAGATAG TTCCTCGGTT
CTGGATCGGA GTGGAAGGGA AGAGACAGAA AAAGCATTCG GAGAAGTTGG ACTGTGAGAT CCAAGAGATT GTAAAGTCTT
TGCTTTGCCT GAAGCAGGAC ACGCAGGGAT GGGCCATTCT CAGCAAAGGG TCCAACGTGA AGATTTTAGG GCACGCCCAA
CCCATGTATC AGACTGTGGC TGACTTCGAA AAGTGGAAAG ACAGAGTTCT GGTCAAAGAA GGCTTCGACA TTGCCTTCCA
AGAGTACTAT GAGACCAAGC GTCATCTTCC TGCTCCTCAA CCATGCGAAT TCAACACTCT TGATGTTCTC GCAACCATAA
CATGCCCTAA TTCCTCTTGT GGACGCGTCA TGGAGGTCAC TTCCGTTAAC TACAAGTGCT GCCATGGTGG CAATGTTGCT
GACCACGCCT TCCCATCTCC GACAACCCAA ACCTTATAAA CCTCAATTAC AACCTCAGTT TGTTTTGGAG AAACTACGCC
AACCTGAATT AAGTGTGTTT TTTTTACTAT ATATCTATGT TTGCATGCAT GTGAGTCTGA ACGACTCGGT CCCTTGCGAC
CTCTTCATAA ATAATGCCAT ATTTTGTATC TTCTGAGTTA GATTATTCAA TAAATAATTC CTTCTCCGAC CGCATTTCGA
AATCCTTCCA ATCTTTTAGT ACTTCC

>Vigan.08G368300.01
ATGTCGATCT CTAAACCTGA ACAAAAGCCT CTTCTGCCAA ACCCATTTCA GTTGAGTGAC ATTGAGCTCA TTGAGAAAGT
GTACGCATCC CACACTTACG ATGACGAAGT GTTTGATAGT GAGCCCCTTT TCAACGTGGT GTCCAGCGTT ATCAAGCTAT
CAAGTAGAGT TGTAGGGGCT ATTCTCAAGA TCGATGAGCA AAATGGTTTT GCAGGAAATG CTATTGCCAT AAACATTTCC
AAACCAGAAT TCTCAAAACT GAAGCTCATT TCCTGTCATA TGATAACAAC CCCTTGGGGG ATGGAGAACG CACACCAAAC
AACCCTAAGG ATTCTTCAAC AACTGAGAAC CTTCTCGTGG GATGCAAAAG TGTTGGTAGC TCTAGCCGGT TTCGCTTTGG
AGTATGGAAA CTTCTGGAAC CTTTATCAGG CATCAGACCC TCTGGGGAAC TCGTTGAAAG TGCTGAGTCA GGTTCAGCAT
AGACAGCTTC CGGTGGTTGA TCTGAACTCA ACAGTGAAGC TGGTGCTGGA GGCTGTTGAG AAGATCAGTC GTTGGGGAAC
CTTGTCTGCT GATGAAAGCT ATGACACCGA GGATGTGCCT GCTTTGTCGG ATGCATTGGA GCAGATCCCC CTTGTTGTTT
ACTGGGTTGT CGCTTCCCTT GTCGCTTGCA ATAGCAACCT CCAGGGTGTA TCGAACTATC CGTTACTGGA ATTTCGTGCC
AAACTTTCTC TCGCTCTGGA TGAGTTCGCC AGGCTACTAG TGATATGCGA GAAGCAAAAA GATCGTGTAG AAGACTACCG
GAGGCGTAAG AGGAACTTTA ACAAGCCTAA AGACATTGTA GACTTTTTGA AGCTCTTGAT CAGTAAAAAT GGCTCTCAGA
ACGCTCAAAT ATACGATGGC AACGCCAGGA AAGTGAATGT TGAGGTTTTC AAGGACAAGT ACGTGTTGCT ATTCATTTCG
GGGTTGGACA GAATAGAAGA TGAGATTCGG CTTCTAAATT CAATCTACGA GGGACTAGTG GAGGATCCGA ATGACAAGAG
CGGATTCAAG AAAGAGGAGT TCAAGATCTT GTGGATTCCG ATGGAGAGTG GATGGGGTGA TGCGCGGAGG GAGGTGTTCA
ACACTCTGAA AAGCTACATA AAATGGTACG TGGTGGAGTA CGTTGAACCC TTGCCAGGAA CAAGGCTGAT TGAAGAGGAT
CTAAAGTTCC AGGGTAAACC TATTCTTCCA GTGGTGAAGC CACAGGGCGT GCTGCTGAAC GATGATGCAT TGGACATCAT
CTTCGAATGG GGAATCGACG CATTCCCTTT CAGAAAATCG GATGCCTACC TACTTGCGCA GAAATGGAAA TGGTTCTGGG
ACGAAGTAAA GAAAACAAAT CTTCACGGCA TACAGGTGAA AGGTGATAGG TACGTGTTCA TATATGGAGG CAGCGACAAG
TGGAGCCGAG AATTCAGTGT GGCAGTGGAT AAAATAAAGA GGCACGAAAC AATAAAGAGG GCAGATGCAA TAATAGAGCA
TTACCATTTG GGGAAGGACG ATCCGAAGAT AGTTCCTCGG TTCTGGATCG GAGTGGAAGG GAAGAGACAG AAAAAGCATT
CGGAGAAGTT GGACTGTGAG ATCCAAGAGA TTGTAAAGTC TTTGCTTTGC CTGAAGCAGG ACACGCAGGG ATGGGCCATT
CTCAGCAAAG GGTCCAACGT GAAGATTTTA GGGCACGCCC AACCCATGTA TCAGACTGTG GCTGACTTCG AAAAGTGGAA
AGACAGAGTT CTGGTCAAAG AAGGCTTCGA CATTGCCTTC CAAGAGTACT ATGAGACCAA GCGTCATCTT CCTGCTCCTC
AACCATGCGA ATTCAACACT CTTGATGTTC TCGCAACCAT AACATGCCCT AATTCCTCTT GTGGACGCGT CATGGAGGTC
ACTTCCGTTA ACTACAAGTG CTGCCATGGT GGCAATGTTG CTGACCACGC CTTCCCATCT CCGACAACCC AAACCTTATA
A

>Vigan.08G368300.01
MSISKPEQKP LLPNPFQLSD IELIEKVYAS HTYDDEVFDS EPLFNVVSSV IKLSSRVVGA ILKIDEQNGF AGNAIAINIS
KPEFSKLKLI SCHMITTPWG MENAHQTTLR ILQQLRTFSW DAKVLVALAG FALEYGNFWN LYQASDPLGN SLKVLSQVQH
RQLPVVDLNS TVKLVLEAVE KISRWGTLSA DESYDTEDVP ALSDALEQIP LVVYWVVASL VACNSNLQGV SNYPLLEFRA
KLSLALDEFA RLLVICEKQK DRVEDYRRRK RNFNKPKDIV DFLKLLISKN GSQNAQIYDG NARKVNVEVF KDKYVLLFIS
GLDRIEDEIR LLNSIYEGLV EDPNDKSGFK KEEFKILWIP MESGWGDARR EVFNTLKSYI KWYVVEYVEP LPGTRLIEED
LKFQGKPILP VVKPQGVLLN DDALDIIFEW GIDAFPFRKS DAYLLAQKWK WFWDEVKKTN LHGIQVKGDR YVFIYGGSDK
WSREFSVAVD KIKRHETIKR ADAIIEHYHL GKDDPKIVPR FWIGVEGKRQ KKHSEKLDCE IQEIVKSLLC LKQDTQGWAI
LSKGSNVKIL GHAQPMYQTV ADFEKWKDRV LVKEGFDIAF QEYYETKRHL PAPQPCEFNT LDVLATITCP NSSCGRVMEV
TSVNYKCCHG GNVADHAFPS PTTQTL*