GBrowse Details

Vigan.08G365600.01

Basic Information:
Name: Vigan.08G365600.01
Multiple alignment
Variant Information
Position: Chr08:46496254..46499455 (- strand)
Length: 3202
Functional Information:
Description: Similar to Uncharacterized protein. [R0HEL3, Capsella rubella.]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L28 (IPR001383)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.39,2.87,22.12,83.65,7.60,14.54,7.03,12.25
Arabidopsis thaliana homolog: AT2G33450.1
Automatic updates:
Name: NM_001254535 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 50S ribosomal protein L28, chloroplastic-like (LOC100804320), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:46496254..46496790 (- strand)
Length: 537
Type: three_prime_UTR
Position: Chr08:46496791..46497023 (- strand)
Length: 233
Type: CDS
Position: Chr08:46498994..46499110 (- strand)
Length: 117
Type: CDS
Position: Chr08:46499206..46499392 (- strand)
Length: 187
Type: CDS
Position: Chr08:46499393..46499455 (- strand)
Length: 63
Type: five_prime_UTR

>Vigan.08G365600.01 class=Sequence position=Chr08:46496254..46499455 (- strand)
TTCAAAAGAA AAAAAAACTG AAAAATCATA AATAAATAAA AAATATTTTT AGATATAAAT AATATGGATA AAATTAATTA
TAATATTTTT TTTTCATCTT ATCCGGGTGC AGCGCATGGT GTGTGGGTAC CAAGTAGTAG GAAATTTGAA GAGATAACAA
ACGCAGAAGA AATGACAATG GCAATGGCAA TGGCGAGTTC TGCAAGCTGT ACGGTGTCGT TTAGGAACAG CTTCGGTCTC
AACAAACCCT GTAACACTCA TCTTCTCTTC CTTCTTTCTT CCATTCTTCA TCTTTGATTC TCTGTTTGTG TTTGTGAAAT
CAATGATTTT GATTTTGACT TTCAGCGGAT CTTGGCTTCG TCAGCTCGCA GTTGAGCGGC CTCAGAATCT GCTGCCCCAA
ATTCCCCATA CCGCCCGTCA CCGCTTCTCC CTCGTTCCCC GCACCTCTCC CCATCGTAGC CAGTAAGCAA TTCCCGTTAC
TTCTTCAATT CTCTGACTTT CACCCAATTC ATAACCCTAA CATTCATGTT GGTTCCCATT AGTAATTAGG AAATGTATAG
CCAGTTGGAA ATTTTCTTCC AACGTTGTTT TCTTCTTCTT CTTTTAATTA TATGTACCAA TATACTTCCT CCACCCCCAA
AATCTCTAAA TCATCTCATT GTTTTTCTTA ATATATCCAT ATTTGTATTT TTAATCTGTA AAGGAAATGA TTGCTTGAGA
GAGGGAGGTT GTTTTAATTA AATTGTTTCA GTAAAAAAAT ATTTATTTTG TTTATAATAT ATGTGACTCT AGTTATTTTT
AAGATAGGGG TTGTAAAGGT AATGCCAATT TTTAGTATCC ATTTCTGAGC TTATTTACTC TTTAAATGCT AATGATATTA
CTTATGTGCT TAGCTATACA CTCACCAATG GCAATTTCTG TTTTTATTCT TACTGGGGTA GTATATGGTG TAATGTATTC
TTTTAAGTGT TGGAAAAGCA GTAGCCCGGC TAAGTTGTGA CTCTCTTTGG AGTTTCCGAA ATTGCAACTT CAAGAGTGAT
GGTTTCTTTA GTCCCACATC AGCTAGTCAA ATGGTTAAAA AGGAATATAC AAGTAGGGTA AAAACTTCAC TTTACAAACC
AGTATTATGG AGTTAAGTTG GATCCAAACC CAAACAATAA GATTTAGCAA TTGAGTATCA GCGTCATATA TTTCAAACAA
TTAAGGAAGT GTATGGTGCA ATGTATTTCT GACGTTATAG AGTATCAGTA TAGTGTAGTG TATTTCTTAC TGTAGGGAAA
CAAAGGCTTG GGTATTGTGT GAATTTGGAA GAAATAATAC AGAGTGTTAA TGTAACATGC ACTATATTAA TTGCTCTGAT
TCTTTCCGTT AGTCAAGCTA TCATATTCTT TTCTTTGTTC TCTGATTTCA AAAGTTTATA TTACAAACGA TGAAAACATT
TTTTTATGGG TTTCATTGTT TCTTAATTTC ACTATTCCGG AATTTTTTTT ATTTAAAATT GAAAATAGAA AATATTTTTC
AAGCCAAACG TCAAGAGATC ATGCATAACT AACGATTTTC TAAAATCGTT ACTTGTTGGT GTGAGTCATC TTCACTGTCA
TTACTGTGTG ATTCTTAACT GCAATCTATG AAGCACTGAT ACTTTAATTT GTTTCACACA TCCATTACTC TCTGGGGCAT
TGCACTCGTA CTTGTTGACG AAGTATCCAA ACTCATGAAA CATCAATACT TTTATTTGTT TCACGAACCT GATATCAATC
ATTTTAGATA CTTCGCTGAT ACGTATTGGT GAAGTGCTCA CACTTTGAAA ACGTGTATAT CTAATAAAAC TATAAGAAAC
ATAAAGTACG TGCAATACAG AAACATGGAA ACATTGTCTC TTCACAAATC AAAATGAAAA TTGTTTTCGT TATGTATTAT
TTTAAAAGGG TACTAAGATT GGCAGTGCTA TTCCTGTATA TAAATAATAG AAAGTAAGTT ATTATGACAA TGATTTATAT
TTTTTTATTT ATTTTGATAA TGTCTAATAA ATGTGTGTTT ATGAATTGGA TATGTACAAT TGCAATCATA TATTTATTAT
ATTTTATAAA TTTTTAAATA TGCATCTTAC ACATGTTATT TTTAATATAA AATTTTCGTA TGGCCACATC GAATGTGTGC
GTCATAGACT GCAATCATGT TACTAAGTTA AATTTGTTAT TTTTGGGGTG AGATATGTGC AAAATGGATG GATGTTTATT
TTGTTTTTCC CTGTAGATTA TTTTATACAT ATCCGTGGAG TGCATTTTTT GGCGGGTCAC ACCTTGTGAT CGTTTGGCTA
CAAGTTTGAA TAAATTTTGT TTTTGTTGAT TCAAAAAAAT AAAAAAGAAA AACTAGTTGA TTGGTGATTG ATTGTTCTAA
TGCTGTGATT TTATTGTTTT TTTTTTTTTC AGAGAGAGTT TGTCCCTTCA CTGGAAAGAA ATCAAACAGG GCCAACAAAG
TATCATTTTC AAACCATAAG ACAAAGAAAC TGCAGTTTGT GAACCTTCAG TACAAAAGAA TTTGGTGGGA AGCGGGGAAG
CGCTTTGTGA AGCTGCGTTT ATCAACTAAG GCATTGAAAA CCATAGAGAA GAATGGACTT GATGCAGTTG CAAAGAAGGC
TGGAATTGAT CTCAGGAAGA AATAAGAGTA CCTAATTATG ATTTTGTAAC AGAGTACCTA ATTATTTCTT CTCCGTATAT
GACTTTTCAG AAGCAAGTTG TATTGTTTGT AGAGAAAAAC AAGATATGGA GAGCTTATAG GCAATGAATT TCACTGATGG
AAATCTCTTT GATAAACCCC TCGTGCAGCT TATCCATAGA TATCACAGGA TCATTAGTAG TTTCTTAAAT GTGAATTATC
CTACTAAATT GTTTTTCTTT TATGTATTTT GAATTGCAGT CACCACAACA AAAAAAGCTG TTGGCAGAGT CTCTGACTTT
GGCTCTTAGT ATGGTAATCC CCTTGCAATG AAGAGAATAA GGTGAATGAC TATGATAGGT AATTACATTT ATCATCTTAT
CTGTCAAGTA TATGGAGATG TTATATAAAT CAGTATCCTA TTTAGAAAGT AGAAAATGCT GGGTTTGTAA ATCACAATTA
GTTTTGTAAT TCTTTAAGCT GCGAAAAGAA CAAAAGTGTT TGTTTCATCG CAGAAATAGG ATTTAAGAAA TATTATACCT
GG

>Vigan.08G365600.01
TTCAAAAGAA AAAAAAACTG AAAAATCATA AATAAATAAA AAATATTTTT AGATATAAAT AATATGGATA AAATTAATTA
TAATATTTTT TTTTCATCTT ATCCGGGTGC AGCGCATGGT GTGTGGGTAC CAAGTAGTAG GAAATTTGAA GAGATAACAA
ACGCAGAAGA AATGACAATG GCAATGGCAA TGGCGAGTTC TGCAAGCTGT ACGGTGTCGT TTAGGAACAG CTTCGGTCTC
AACAAACCCT CGGATCTTGG CTTCGTCAGC TCGCAGTTGA GCGGCCTCAG AATCTGCTGC CCCAAATTCC CCATACCGCC
CGTCACCGCT TCTCCCTCGT TCCCCGCACC TCTCCCCATC GTAGCCAAGA GAGTTTGTCC CTTCACTGGA AAGAAATCAA
ACAGGGCCAA CAAAGTATCA TTTTCAAACC ATAAGACAAA GAAACTGCAG TTTGTGAACC TTCAGTACAA AAGAATTTGG
TGGGAAGCGG GGAAGCGCTT TGTGAAGCTG CGTTTATCAA CTAAGGCATT GAAAACCATA GAGAAGAATG GACTTGATGC
AGTTGCAAAG AAGGCTGGAA TTGATCTCAG GAAGAAATAA GAGTACCTAA TTATGATTTT GTAACAGAGT ACCTAATTAT
TTCTTCTCCG TATATGACTT TTCAGAAGCA AGTTGTATTG TTTGTAGAGA AAAACAAGAT ATGGAGAGCT TATAGGCAAT
GAATTTCACT GATGGAAATC TCTTTGATAA ACCCCTCGTG CAGCTTATCC ATAGATATCA CAGGATCATT AGTAGTTTCT
TAAATGTGAA TTATCCTACT AAATTGTTTT TCTTTTATGT ATTTTGAATT GCAGTCACCA CAACAAAAAA AGCTGTTGGC
AGAGTCTCTG ACTTTGGCTC TTAGTATGGT AATCCCCTTG CAATGAAGAG AATAAGGTGA ATGACTATGA TAGGTAATTA
CATTTATCAT CTTATCTGTC AAGTATATGG AGATGTTATA TAAATCAGTA TCCTATTTAG AAAGTAGAAA ATGCTGGGTT
TGTAAATCAC AATTAGTTTT GTAATTCTTT AAGCTGCGAA AAGAACAAAA GTGTTTGTTT CATCGCAGAA ATAGGATTTA
AGAAATATTA TACCTGG

>Vigan.08G365600.01
ATGGATAAAA TTAATTATAA TATTTTTTTT TCATCTTATC CGGGTGCAGC GCATGGTGTG TGGGTACCAA GTAGTAGGAA
ATTTGAAGAG ATAACAAACG CAGAAGAAAT GACAATGGCA ATGGCAATGG CGAGTTCTGC AAGCTGTACG GTGTCGTTTA
GGAACAGCTT CGGTCTCAAC AAACCCTCGG ATCTTGGCTT CGTCAGCTCG CAGTTGAGCG GCCTCAGAAT CTGCTGCCCC
AAATTCCCCA TACCGCCCGT CACCGCTTCT CCCTCGTTCC CCGCACCTCT CCCCATCGTA GCCAAGAGAG TTTGTCCCTT
CACTGGAAAG AAATCAAACA GGGCCAACAA AGTATCATTT TCAAACCATA AGACAAAGAA ACTGCAGTTT GTGAACCTTC
AGTACAAAAG AATTTGGTGG GAAGCGGGGA AGCGCTTTGT GAAGCTGCGT TTATCAACTA AGGCATTGAA AACCATAGAG
AAGAATGGAC TTGATGCAGT TGCAAAGAAG GCTGGAATTG ATCTCAGGAA GAAATAA

>Vigan.08G365600.01
MDKINYNIFF SSYPGAAHGV WVPSSRKFEE ITNAEEMTMA MAMASSASCT VSFRNSFGLN KPSDLGFVSS QLSGLRICCP
KFPIPPVTAS PSFPAPLPIV AKRVCPFTGK KSNRANKVSF SNHKTKKLQF VNLQYKRIWW EAGKRFVKLR LSTKALKTIE
KNGLDAVAKK AGIDLRKK*