GBrowse Details

Vigan.08G360500.01

Basic Information:
Name: Vigan.08G360500.01
Multiple alignment
Variant Information
Position: Chr08:45967739..45971437 (- strand)
Length: 3699
Functional Information:
Description: Similar to Malate dehydrogenase. [T2DPK7, Phaseolus vulgaris]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Biological Process: malate metabolic process (GO:0006108)
Biological Process: cellular carbohydrate metabolic process (GO:0044262)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: malate dehydrogenase activity (GO:0016615)
Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616)
Molecular Function: L-malate dehydrogenase activity (GO:0030060)
InterPro: Lactate/malate dehydrogenase, N-terminal (IPR001236)
Malate dehydrogenase, active site (IPR001252)
L-lactate/malate dehydrogenase (IPR001557)
Malate dehydrogenase, type 2 (IPR010945)
Malate dehydrogenase, NAD-dependent, cytosolic (IPR011274)
Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (IPR015955)
NAD(P)-binding domain (IPR016040)
Lactate/malate dehydrogenase, C-terminal (IPR022383)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:21.35,138.92,441.48,227.44,605.83,1152.66,492.40,341.79
Arabidopsis thaliana homolog: AT1G04410.1, AT5G43330.1, AT5G56720.1
Automatic updates:
Name: NM_001249732 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cytosolic malate dehydrogenase (LOC547963), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001256362 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max malate dehydrogenase, cytoplasmic-like (LOC100811402), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:45967739..45968089 (- strand)
Length: 351
Type: three_prime_UTR
Position: Chr08:45968090..45968184 (- strand)
Length: 95
Type: CDS
Position: Chr08:45968552..45968663 (- strand)
Length: 112
Type: CDS
Position: Chr08:45968752..45968887 (- strand)
Length: 136
Type: CDS
Position: Chr08:45968972..45969249 (- strand)
Length: 278
Type: CDS
Position: Chr08:45969769..45969944 (- strand)
Length: 176
Type: CDS
Position: Chr08:45970059..45970217 (- strand)
Length: 159
Type: CDS
Position: Chr08:45971190..45971232 (- strand)
Length: 43
Type: CDS
Position: Chr08:45971233..45971437 (- strand)
Length: 205
Type: five_prime_UTR

>Vigan.08G360500.01 class=Sequence position=Chr08:45967739..45971437 (- strand)
AAATAGTATA GTAATACTTC TCTACATTAT TTGCATATTT TACTTTAGAA GAAATATAGA GTCAAGCGGC GTCGTTCTGA
TTCGTTCTAA CCTTCTCCAC ACGAATAAAT ACCGAAGTCC ACCCTCACTC GGTCACTCAC TCCTTCAGTG TTCATTCATA
TCTTCAACCC TCTTCGTTCC TTCAATTCGT TCCATTTCTT CCAAAATGGC CAAAGACCCA GTTCGTGTTC TTGTCACAGG
CGCAGCAGGT AATCCTCTAT TATCCAGAAT CTATTTTTGT ACCTTTCATT TCTTTTAGAT TCGTCACGAT CGCTTGGTTT
TACCCTTCTG TGTTTTCAAT GCGAGATCTG TCGCTCTGAT GGTTGTTTTG AATTTGTTTG ACGATCTTAA GTTATGGGTC
TCTATGAAAA TGATGTCTTT GGCTGTGTTT GAAACTTGAT CTGCTTATGG CTCAGATCTG TTTCTGTGAT GAACCTTGGT
GATGGTTTAT AACTGTGTGT TGTGATCCCT TTTTATGTAG ATTTGTTTTC GTTGATTTGA TTTGTAAGTT TGGCTTGTGA
TTCTAATCTA ACTGTTTGTT AAGGTTGTTT TTTTATGCTG TTATAAAGAA ATGGAATGTG TTTTATGTTT CATTAGGGAG
TGGAAGTTGA AAATAGCGTA GTTTTGAGTA TCTGCATCTT TTATCATCTT ATGGTTTCTT GGTATCTTTA TTCTCTGTGA
TTGTATGAGA AACATCTGAT TCTGTTATAT TCTGTGTGGC AAGTTGACTT ACTATCTAAG AAGTACCGAG ACTTTCAATT
TGTATCATGT ATCTGACATG TCGTATCCGG GGCACCATAG ATTACTTTCG TGGGTAGGAT CAGGAATGAA ATCTGTTGAT
TATATTGTGT GTTTATCACT GTTGTATAAG AAAAATTGCT GTCACTGTAC ACTTTAATTG AACTGAAAAC AGAAGCCTTA
GTCAATTTGA TTTTTTTTTT CTGGAGGTGC ACTTTCTGTT GTTGGTGTTT CTGTACTCTC TTCTTTTCTT TTTTTATTTT
CTTTTAAGCA AAGATCTATG TGTTGTTTTA AGTTATTTAT AGACCTCGTT AAAAACTTAC AATGATGTTT TCTGATGGTA
TGATTTGTTG CCTTCAACTG AATTTGGTCT GCATGTGGAT GCATGGAAAT TTATTTTTTA TCATGTTGAT GTGCTAATCA
AGTGCTTTTA TCAATTGTAG GACAAATTGG ATATGCTCTT GTCCCTATGA TTGCTAGAGG AGTGATGTTG GGTCCTGACC
AGCCTGTGAT CCTCCACATG CTTGATATTC CTCCAGCAGC AGAATCATTG AATGGGGTTA AAATGGAATT GGTGGATGCT
GCATTCCCTC TTCTTAAAGG TTTGACACTC CATTGTTGAA CGTTGCTTAA ACAACATAGA AACTCGATCT TAGAGTTGAG
ATAGGTTGTT TTAGTGGTTT ATATAATCAA TAGTGTGAAC TTTTTTGTTT CAGGTGTTGT TGCAACAACT GATGTGGTTG
AGGCATGCAC TGGTGTCAAT ATTGCCGTGA TGGTTGGTGG ATTCCCAAGA AAAGAAGGTA TGGAGAGGAA AGATGTGATG
TCTAAGAATG TCTCAATTTA CAAGTCTCAG GCTTCTGCCC TTGAAAAACA TGCTGCTGCC AACTGCAAGG TAATCCCTTT
CATCTGAATC TGCAGTCCTT ATTAACTACA TTTGATTAAA TTGCAACTGT TTTTTTTTGT TGGCAAAACT TGTATTTTGT
TGGGGCATGT TGATTTTGTC TTCTAATTGA AAGCTGTTAA TTTTGTTGGT TTCACACAAG TCCAATGAAA TATAAGCAGA
TATGCTGATC TTATTTGCAG CAGCTTTTGT ACCCATTAAC ATATTTGGAG TTGCAATGGC TTTATATGTA TCCCCGTAAT
TATGTTGAGT TTTTGTACTT GCTTGTTGAA CTTTGACCAC TTTTAGGAGA TTTGAAACTT TACATGAACT ATGCATTATG
GAATAAACTC CACCTAGTTC ATATATGTGC AATTGTACTA TATATATGGT GAAGTTCTTG TTTCTTGCGA TTCAATCTTA
ATAAAACCTA ACTGTCTATG TCTATTCATG AAATGTATAC TGCATGTTAT CTTTTTCAAA AACATGTTTT ATTGGAATAT
TTATAAAAGA TTTTGCATTA CCCTGCAGGT TCTGGTTGTT GCTAACCCAG CAAACACCAA TGCATTGATC TTGAAGGAAT
TTGCCCCATC AATTCCAGAG AAAAACATTT CTTGTTTGAC TAGATTGGAT CACAACAGGG CCCTGGGGCA AATTTCTGAA
AGACTTGGTG TTCAGGTTTC TGAAGTGAAG AATGTCATAA TCTGGGGTAA TCACTCATCC ACTCAGTATC CCGATGTTAA
CCATGCAACT GTTACAACCC CAGCTGGGGA CAAATCAGTC CGTGAACTTG TTGCTGATGA TGCCTGGTAT GTTACAAATA
ATGTAAATTA TGGTAGTTCT TTTTTAAGAT TGTGTTTATT GAAACATTGC TGCAAATTTT CATACTCAAG GTTGAATGGG
GAGTTCATTA CAACTGTTCA ACAACGTGGT GCTGCAATTA TCAAGGCTAG AAAGCTTTCA AGTGCACTAT CAGCTGCTAG
TGCTGCTTGT GACCATATTA GAGATTGGGT TCTTGGAACT CCTCAGGTTG GTTGGGCTTT TGTTTGATTT TTAATTCAGG
TTTTGTATGT GTCTCCAGCT AAGTTAATTG TTTATTTTTG CATTGCTATT TTAGGGCACC TGGGTGTCAA TGGGAGTATA
TTCCGATGGA TCGTACAATG TTCCAGCTGG ACTGATCTAT TCATTCCCTG TCACTTGTGC CAATGGGGAA TGGACAATTG
TCCAAGGTTA GTTTTTGTCA CATGATGGTG TGTTGAATCT AAACGCGGAT ACGTATTTTT TCTCTTGTCA TCACCATTGT
ATTTTGTACT GAAACAACGT TTACTTTAAC AATCACTTCT ATGGATGATG CTTGCAATGC AACTAACAGT ACGGGCCAGT
TTGAGTTTCG AGAATGTTTA TTCATGACAG ATAACATTTA TAAAACTCTA GTAATTAACT GAGCCGAATC ATCTTTAGTT
GAATAAAGGC TTTGTTATTT TTCTATTAAA TGATGTTTTT GTAATAACTA CACTACTTTT TCAAAACAAC CACTTGTTCT
AACTTGAATG AATGCATCTG ATAATTATTT CATTTGTCCA ATAATTTGCT CAGGACTTCC AATTGACGAG ATCTCAAGGA
AGAAGTTGGA CTTGACAGGA GAAGAGCTTT CTGAGGAGAA GGCATTGGCT TACTCATGCC TCTCGTAGAC ACATTGACCA
TGTTTTTGCG TATAGAAGTG TAGCTTCAAT TTTGAATAAT TCTCCAAGAC AGAACAAAGG AAGTATGAGT GCAGAGAGTG
TGCTTTTCAT TGGCATTACT TGTTGTTTTG CAACATCTAA TCCTTTTAGG AGGATATTTG AGTTTAACAG TTTTAGTCAT
GGTATTTAAT ATATCATGAG CCGCATATTT AGTTGGATTA TGTGCTTTAA TGGCTTCAAC TTTTTGGTGT GTTGTGGTGG
CTTTATATGT TGGATGCACT AGCGTGCAGA CGCATACCTC AGCTCTTGTG CAATAACGTC ATCATCGATG CTTTTTACCT
ATACCATCTT TTTCTCACA

>Vigan.08G360500.01
AAATAGTATA GTAATACTTC TCTACATTAT TTGCATATTT TACTTTAGAA GAAATATAGA GTCAAGCGGC GTCGTTCTGA
TTCGTTCTAA CCTTCTCCAC ACGAATAAAT ACCGAAGTCC ACCCTCACTC GGTCACTCAC TCCTTCAGTG TTCATTCATA
TCTTCAACCC TCTTCGTTCC TTCAATTCGT TCCATTTCTT CCAAAATGGC CAAAGACCCA GTTCGTGTTC TTGTCACAGG
CGCAGCAGGA CAAATTGGAT ATGCTCTTGT CCCTATGATT GCTAGAGGAG TGATGTTGGG TCCTGACCAG CCTGTGATCC
TCCACATGCT TGATATTCCT CCAGCAGCAG AATCATTGAA TGGGGTTAAA ATGGAATTGG TGGATGCTGC ATTCCCTCTT
CTTAAAGGTG TTGTTGCAAC AACTGATGTG GTTGAGGCAT GCACTGGTGT CAATATTGCC GTGATGGTTG GTGGATTCCC
AAGAAAAGAA GGTATGGAGA GGAAAGATGT GATGTCTAAG AATGTCTCAA TTTACAAGTC TCAGGCTTCT GCCCTTGAAA
AACATGCTGC TGCCAACTGC AAGGTTCTGG TTGTTGCTAA CCCAGCAAAC ACCAATGCAT TGATCTTGAA GGAATTTGCC
CCATCAATTC CAGAGAAAAA CATTTCTTGT TTGACTAGAT TGGATCACAA CAGGGCCCTG GGGCAAATTT CTGAAAGACT
TGGTGTTCAG GTTTCTGAAG TGAAGAATGT CATAATCTGG GGTAATCACT CATCCACTCA GTATCCCGAT GTTAACCATG
CAACTGTTAC AACCCCAGCT GGGGACAAAT CAGTCCGTGA ACTTGTTGCT GATGATGCCT GGTTGAATGG GGAGTTCATT
ACAACTGTTC AACAACGTGG TGCTGCAATT ATCAAGGCTA GAAAGCTTTC AAGTGCACTA TCAGCTGCTA GTGCTGCTTG
TGACCATATT AGAGATTGGG TTCTTGGAAC TCCTCAGGGC ACCTGGGTGT CAATGGGAGT ATATTCCGAT GGATCGTACA
ATGTTCCAGC TGGACTGATC TATTCATTCC CTGTCACTTG TGCCAATGGG GAATGGACAA TTGTCCAAGG ACTTCCAATT
GACGAGATCT CAAGGAAGAA GTTGGACTTG ACAGGAGAAG AGCTTTCTGA GGAGAAGGCA TTGGCTTACT CATGCCTCTC
GTAGACACAT TGACCATGTT TTTGCGTATA GAAGTGTAGC TTCAATTTTG AATAATTCTC CAAGACAGAA CAAAGGAAGT
ATGAGTGCAG AGAGTGTGCT TTTCATTGGC ATTACTTGTT GTTTTGCAAC ATCTAATCCT TTTAGGAGGA TATTTGAGTT
TAACAGTTTT AGTCATGGTA TTTAATATAT CATGAGCCGC ATATTTAGTT GGATTATGTG CTTTAATGGC TTCAACTTTT
TGGTGTGTTG TGGTGGCTTT ATATGTTGGA TGCACTAGCG TGCAGACGCA TACCTCAGCT CTTGTGCAAT AACGTCATCA
TCGATGCTTT TTACCTATAC CATCTTTTTC TCACA

>Vigan.08G360500.01
ATGGCCAAAG ACCCAGTTCG TGTTCTTGTC ACAGGCGCAG CAGGACAAAT TGGATATGCT CTTGTCCCTA TGATTGCTAG
AGGAGTGATG TTGGGTCCTG ACCAGCCTGT GATCCTCCAC ATGCTTGATA TTCCTCCAGC AGCAGAATCA TTGAATGGGG
TTAAAATGGA ATTGGTGGAT GCTGCATTCC CTCTTCTTAA AGGTGTTGTT GCAACAACTG ATGTGGTTGA GGCATGCACT
GGTGTCAATA TTGCCGTGAT GGTTGGTGGA TTCCCAAGAA AAGAAGGTAT GGAGAGGAAA GATGTGATGT CTAAGAATGT
CTCAATTTAC AAGTCTCAGG CTTCTGCCCT TGAAAAACAT GCTGCTGCCA ACTGCAAGGT TCTGGTTGTT GCTAACCCAG
CAAACACCAA TGCATTGATC TTGAAGGAAT TTGCCCCATC AATTCCAGAG AAAAACATTT CTTGTTTGAC TAGATTGGAT
CACAACAGGG CCCTGGGGCA AATTTCTGAA AGACTTGGTG TTCAGGTTTC TGAAGTGAAG AATGTCATAA TCTGGGGTAA
TCACTCATCC ACTCAGTATC CCGATGTTAA CCATGCAACT GTTACAACCC CAGCTGGGGA CAAATCAGTC CGTGAACTTG
TTGCTGATGA TGCCTGGTTG AATGGGGAGT TCATTACAAC TGTTCAACAA CGTGGTGCTG CAATTATCAA GGCTAGAAAG
CTTTCAAGTG CACTATCAGC TGCTAGTGCT GCTTGTGACC ATATTAGAGA TTGGGTTCTT GGAACTCCTC AGGGCACCTG
GGTGTCAATG GGAGTATATT CCGATGGATC GTACAATGTT CCAGCTGGAC TGATCTATTC ATTCCCTGTC ACTTGTGCCA
ATGGGGAATG GACAATTGTC CAAGGACTTC CAATTGACGA GATCTCAAGG AAGAAGTTGG ACTTGACAGG AGAAGAGCTT
TCTGAGGAGA AGGCATTGGC TTACTCATGC CTCTCGTAG

>Vigan.08G360500.01
MAKDPVRVLV TGAAGQIGYA LVPMIARGVM LGPDQPVILH MLDIPPAAES LNGVKMELVD AAFPLLKGVV ATTDVVEACT
GVNIAVMVGG FPRKEGMERK DVMSKNVSIY KSQASALEKH AAANCKVLVV ANPANTNALI LKEFAPSIPE KNISCLTRLD
HNRALGQISE RLGVQVSEVK NVIIWGNHSS TQYPDVNHAT VTTPAGDKSV RELVADDAWL NGEFITTVQQ RGAAIIKARK
LSSALSAASA ACDHIRDWVL GTPQGTWVSM GVYSDGSYNV PAGLIYSFPV TCANGEWTIV QGLPIDEISR KKLDLTGEEL
SEEKALAYSC LS*