GBrowse Details

Vigan.08G355900.01

Basic Information:
Name: Vigan.08G355900.01
Multiple alignment
Variant Information
Position: Chr08:45540082..45541851 (+ strand)
Length: 1770
Functional Information:
Description: Similar to uncharacterized protein. [C6TJ19, Glycine max]
GO: Molecular Function: acid phosphatase activity (GO:0003993)
InterPro: Acid phosphatase (Class B) (IPR005519)
Acid phosphatase, plant (IPR010028)
Vegetative storage protein/acid phosphatase (IPR014403)
HAD-like domain (IPR023214)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.20,0.00,28.62,0.35,4.71,35.89,23.64,0.25
Automatic updates:
Name: NM_001255226 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max acid phosphatase (HAD1), mRNA.
PubMed ID: 29754326 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:45540082..45540189 (+ strand)
Length: 108
Type: five_prime_UTR
Position: Chr08:45540190..45540692 (+ strand)
Length: 503
Type: CDS
Position: Chr08:45541255..45541464 (+ strand)
Length: 210
Type: CDS
Position: Chr08:45541553..45541730 (+ strand)
Length: 178
Type: CDS
Position: Chr08:45541731..45541851 (+ strand)
Length: 121
Type: three_prime_UTR

>Vigan.08G355900.01 class=Sequence position=Chr08:45540082..45541851 (+ strand)
CAGATTTTCC TTCCTCATAA TTGACATTTT CTTCAGTTCT GGCACTCTTG CCAGCTATAG CACCATGTGA CTGATGCAGC
TAATTTTTTA TTGATTCAGA CCCATGTGAT GACTTGTCAC ATTCTCAGAA CATTGAAATC TGCATACCTT AAAAGGGAAT
GGCTAGTTAG AGTTGTTCTG TCATCTGTTA AATTCTCCTT GCATGCAGTT TGTTCCAAGG AAGAGAAAAT GGAGAAAACA
GTGTGGTGGT GTCTGGTTTT GACATGCTTT TTGGTTCCTC TAGCAGGTGC TGCTGATTGG AACATACTGA AACTGCAGAC
ACATGATGGA TTGAAGATCA GCTTGAAGAA TTATTGTGAG AGTTGGAGGA TGAATGTGGA GCTGCACAAC ATTAGGGAGT
TCCAAGTTGT GCCTGAAGAA TGCATTGAGT ACATTGGAAA ATATGTCACT TCAACACAGT ACAAAGTGGA CTCACAGAGA
GCAACCGAAG AGTGTCTGCT TTATCTCAGC ACAAGCTGTA ATCTGAAGAA AGATGGGTTC GATGCTTGGA TTTTTGACAT
CGATGATACC TTGCTTTCAA CAGTTCCTTA CTACAAGGAT AATCAATACG GGTAATTCAA AATTTCACAT TTGGCTATAC
ATTTTGCATG TTTAAAATTC ATTTTTTAAT ATATATATAT ATCACGAGAA TAGAAATCTC GTGTGAACAA AAGTAAAATC
TCGATTGATT TTGATTTCCA GTACAAATAC GAATGGTGAA AGCGATCTAT TGATCATTTA GTCTTTCGAA ATTTGAAGTT
AGATGTGTCA AAAAAGTTAC TCAAGAATAA CTTGCTTGTG ACAATTAAGC CACAGTGAAA TATCACTATT TTTAACGTTA
TTTCATTTAT TCCGTGAATC GCCCGTTTTT GGTTCCAAGA TTGACTTCAA TCCGTCGACC TGGACTGAAG ACATTAGTGA
AAAGTTTGAC TGTGATAACA TTTGTTAAAA AAATAACGCA GGTGTCGTAA GAAGAACGAG AACTAGAATT ATTTATATAT
AAATCTCATT TTATAAATTG GATTTAAAGA AAAATATTTA TTGGGTTTGG TAGTATGAAA GTCTTGATCA TGTTTTGATC
TCCTTTGGTT GGTGATGATC ATGGTAGTAA ATGATGGATT TCTTTGACAA CAGGGGAAGG AAACTGAATG TGACATCTCT
GGAGGAATGG ATGAAAAGTG GTAAAGCACC TGCTCTTGAT CACTCATTGA AGCTCTACGA TGAACTTAAA TCCAGGGGTG
TGCAAATCCT TTTGGTTACT TCAAGGAAGG AACATCTCAG ATCAGCCACA ATCGACAACC TTGTAAAAGT TGGTTACTAT
GGTTGGACTA AAATTATCTT TAGGTGAGTA CTATTACCTC TACTTTTCTT TCAATAGTCT TCCATTTTAG GCTAAATGTT
TCTCTTTTTC TTTCATTTTG TTTCTGTGCA GAGATCCTGC AAATGAATTG GTATCAGTTG AGAAGTATAA ATCTGATGTG
AGAAAGAAAA TAGTAAATGA AGGTTATCGC ATTTGGGGCA TTCTGGGAGA CCAATACAGT AGCATTGAAG GGATTCCAAA
CCCTAAAAGA GCATTTAAAC TCCCAAATCC AATGTACTAT GTTGCCTAAT GTGTAATTCT ATTATTTCTT CCTCATTTAC
AACTTTATTC CAAACAATGA TTAAGATAAA TTTCCTTTTC ATTTTAATTT ATATTAAATA ATACAAATCA ATCTCTCATT
TCACTGACAG 

>Vigan.08G355900.01
CAGATTTTCC TTCCTCATAA TTGACATTTT CTTCAGTTCT GGCACTCTTG CCAGCTATAG CACCATGTGA CTGATGCAGC
TAATTTTTTA TTGATTCAGA CCCATGTGAT GACTTGTCAC ATTCTCAGAA CATTGAAATC TGCATACCTT AAAAGGGAAT
GGCTAGTTAG AGTTGTTCTG TCATCTGTTA AATTCTCCTT GCATGCAGTT TGTTCCAAGG AAGAGAAAAT GGAGAAAACA
GTGTGGTGGT GTCTGGTTTT GACATGCTTT TTGGTTCCTC TAGCAGGTGC TGCTGATTGG AACATACTGA AACTGCAGAC
ACATGATGGA TTGAAGATCA GCTTGAAGAA TTATTGTGAG AGTTGGAGGA TGAATGTGGA GCTGCACAAC ATTAGGGAGT
TCCAAGTTGT GCCTGAAGAA TGCATTGAGT ACATTGGAAA ATATGTCACT TCAACACAGT ACAAAGTGGA CTCACAGAGA
GCAACCGAAG AGTGTCTGCT TTATCTCAGC ACAAGCTGTA ATCTGAAGAA AGATGGGTTC GATGCTTGGA TTTTTGACAT
CGATGATACC TTGCTTTCAA CAGTTCCTTA CTACAAGGAT AATCAATACG GGGGAAGGAA ACTGAATGTG ACATCTCTGG
AGGAATGGAT GAAAAGTGGT AAAGCACCTG CTCTTGATCA CTCATTGAAG CTCTACGATG AACTTAAATC CAGGGGTGTG
CAAATCCTTT TGGTTACTTC AAGGAAGGAA CATCTCAGAT CAGCCACAAT CGACAACCTT GTAAAAGTTG GTTACTATGG
TTGGACTAAA ATTATCTTTA GAGATCCTGC AAATGAATTG GTATCAGTTG AGAAGTATAA ATCTGATGTG AGAAAGAAAA
TAGTAAATGA AGGTTATCGC ATTTGGGGCA TTCTGGGAGA CCAATACAGT AGCATTGAAG GGATTCCAAA CCCTAAAAGA
GCATTTAAAC TCCCAAATCC AATGTACTAT GTTGCCTAAT GTGTAATTCT ATTATTTCTT CCTCATTTAC AACTTTATTC
CAAACAATGA TTAAGATAAA TTTCCTTTTC ATTTTAATTT ATATTAAATA ATACAAATCA ATCTCTCATT TCACTGACAG


>Vigan.08G355900.01
ATGACTTGTC ACATTCTCAG AACATTGAAA TCTGCATACC TTAAAAGGGA ATGGCTAGTT AGAGTTGTTC TGTCATCTGT
TAAATTCTCC TTGCATGCAG TTTGTTCCAA GGAAGAGAAA ATGGAGAAAA CAGTGTGGTG GTGTCTGGTT TTGACATGCT
TTTTGGTTCC TCTAGCAGGT GCTGCTGATT GGAACATACT GAAACTGCAG ACACATGATG GATTGAAGAT CAGCTTGAAG
AATTATTGTG AGAGTTGGAG GATGAATGTG GAGCTGCACA ACATTAGGGA GTTCCAAGTT GTGCCTGAAG AATGCATTGA
GTACATTGGA AAATATGTCA CTTCAACACA GTACAAAGTG GACTCACAGA GAGCAACCGA AGAGTGTCTG CTTTATCTCA
GCACAAGCTG TAATCTGAAG AAAGATGGGT TCGATGCTTG GATTTTTGAC ATCGATGATA CCTTGCTTTC AACAGTTCCT
TACTACAAGG ATAATCAATA CGGGGGAAGG AAACTGAATG TGACATCTCT GGAGGAATGG ATGAAAAGTG GTAAAGCACC
TGCTCTTGAT CACTCATTGA AGCTCTACGA TGAACTTAAA TCCAGGGGTG TGCAAATCCT TTTGGTTACT TCAAGGAAGG
AACATCTCAG ATCAGCCACA ATCGACAACC TTGTAAAAGT TGGTTACTAT GGTTGGACTA AAATTATCTT TAGAGATCCT
GCAAATGAAT TGGTATCAGT TGAGAAGTAT AAATCTGATG TGAGAAAGAA AATAGTAAAT GAAGGTTATC GCATTTGGGG
CATTCTGGGA GACCAATACA GTAGCATTGA AGGGATTCCA AACCCTAAAA GAGCATTTAA ACTCCCAAAT CCAATGTACT
ATGTTGCCTA A

>Vigan.08G355900.01
MTCHILRTLK SAYLKREWLV RVVLSSVKFS LHAVCSKEEK MEKTVWWCLV LTCFLVPLAG AADWNILKLQ THDGLKISLK
NYCESWRMNV ELHNIREFQV VPEECIEYIG KYVTSTQYKV DSQRATEECL LYLSTSCNLK KDGFDAWIFD IDDTLLSTVP
YYKDNQYGGR KLNVTSLEEW MKSGKAPALD HSLKLYDELK SRGVQILLVT SRKEHLRSAT IDNLVKVGYY GWTKIIFRDP
ANELVSVEKY KSDVRKKIVN EGYRIWGILG DQYSSIEGIP NPKRAFKLPN PMYYVA*