GBrowse Details

Vigan.08G343600.01

Basic Information:
Name: Vigan.08G343600.01
Multiple alignment
Variant Information
Position: Chr08:44157329..44161082 (- strand)
Length: 3754
Functional Information:
Description: Similar to DNA-directed RNA polymerases I, II, and III subunit RPABC3-like. [XP_004514482.1, Cicer arietinum]
GO: Biological Process: transcription, DNA-dependent (GO:0006351)
InterPro: RNA polymerase, Rpb8 (IPR005570)
Nucleic acid-binding, OB-fold (IPR012340)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:70.29,59.19,52.80,52.91,97.78,34.02,30.69,45.68
Arabidopsis thaliana homolog: AT3G59600.1
Automatic updates:
Name: NM_001250106 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499860 (LOC100499860), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001252708 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max DNA-directed RNA polymerases I, II, and III subunit RPABC3-like (LOC100816388), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:44157329..44158065 (- strand)
Length: 737
Type: three_prime_UTR
Position: Chr08:44158066..44158177 (- strand)
Length: 112
Type: CDS
Position: Chr08:44158601..44158689 (- strand)
Length: 89
Type: CDS
Position: Chr08:44160079..44160236 (- strand)
Length: 158
Type: CDS
Position: Chr08:44160836..44160914 (- strand)
Length: 79
Type: CDS
Position: Chr08:44160915..44161082 (- strand)
Length: 168
Type: five_prime_UTR

>Vigan.08G343600.01 class=Sequence position=Chr08:44157329..44161082 (- strand)
AGTCTCAACG CAGAGTATGT TCTGACAACA ATCTTCTTCT TGCCGTTCTT CTAATCTTGT TTGCATCTTT TGATTCCTAA
AGCTTCTTCG AAATTCGCCT TTCTCTGCTT TGCGATTTTA TATTTCAGAT TATTGGTAAT TTGTTTCACA AGTTCTTCTG
TTTCAGCCAT GGTGGAGAAT AATCTCTTCG AGGATATTTT CAGAGTAGAA AAACTAAACC CCGATGACAA AAAATTATTC
GATAAAGGTA TTATTATTCC TACTATTGTT ATTTGCATCT GTATTACTTC TTCAATACTT CAATTCTCTT CATATGTCTT
TGTTTAGTTT AGCTTTCCAT GCTTTGTTGT TGTACGTGTC TAGGGTTTTT CCCTTGAGCT CTCTGTATTA TTTGGCTCTT
GTTTTCTTTC TTTTTTTTTG GAATCTCGTT TTTGTTGTTT TTGTAAATTG GATATCAACA TTTCGTGCAA TTTGAAATGC
ATGACACTGT TAGTGCATGC GCTTTCAATC TATCAAAGAA CGAACGCATC AAAGCTTTGG GATGAGAATC GCCAGTGAGA
CCATGAAAAA TATAAAGAAT ATCCCAAATT TTCATTTTAG GTGTAAAATT TCTATCCAAA AGTTCTTTAC ATTTGATTTC
TAAAGAAGTG TTTTTTATGT ATGATATTTT AAATTCACTT AAAAGATTGA ATTTCCTTTC TTAAAATTTC CCGTCAAAAC
TCGTCATTAA AGTTTGTCTG TTGTTATTCG ATTTCCATTT GTAGCGGTGT CATTGGTCTT GCTAGAGATG TTTTTGATCT
ACTTCTGTGT ATTTCATTCT AATACTTCGA TTTTGTGCAT CTCAAGTTAC TCGAATTGAA GCAAGAAGTG AAAAGTTTGA
CATGTTTATG CACCTTGATA TCAATTCTGA GATATATCCA TTAAAGGTTG GTCAGAAGTT CACCCTTGTG CTGGTTTCAT
CTCTTAATCC TGATGGAACA CCAGACACTG GCTATTATAC ACAGGTAAGA AATTTATGAT GTACAATGAA CCTTTCTTTC
ACTGTGAAGG ATTGTTATTA TGATTATCAA GTGAAACCAT GGTACAAAAC ATTAGTTACT GTTAGAACGT ACATTTAATG
CCGTATGTCT GCACTCATTC TTTGTCAATT GTTATTACGT TTCCTGTCGC TGGGAGCTTC TGTCCTTCAT CATGAACTTG
TAAATCAAAT CATAAATTGG GTTAATGGTG GTGAGCATAG ACAAGATTGA TTTGGAAGGC GTGGTTTTGT ACTATTAATG
CGGGGATGAT TACATGATAC CATTGCTTAA TTTAGTGTTG TAAGAAGCAA ATTTTCTCTG TTCAATACAC AGTTTGCTCT
TTCTAAATTT TTATTTAGTG CCTTTTTATT GTGTATTGGA ATATTCAGTA TCTATAGTTG TATCGAACCA CTCGGCAACT
GTTATTAAAA TAAGATTCAA GTATCTAGGA CTGTCAAATA CTTCTATATA TCAATGTTTT ACCTGTATGT GATTCTGGTG
TTTATGTGAT GCAACTCGAT AAATATTACA TATATATATA TATATATATA TATATATATA TATATATATA TATTTAGTAA
TACATTTGGC ATATAACTCA GATCAGATAA TTTAAATAGG ATCAGAAGAC ACTATCTTTT CTTCTGTATC CTTAGAGCTA
TACTAAATAG TATGCAATTT TATAACTCGA GAGTGATACA ATACAAGAGT AGTTGATGGG TTTAAAGGGA TCTGAATCCA
CCCTAAATAG GGCCATTCTT CTAACCACAA TGAAAAGAAA ATAAATGAAA AACTTCAATT GTTTTTAATC AATCCTTCTG
ACAATCCTTA GGCTTGAATT CCTTTATATT TTAATCCTAA GTAAAGATGT TTCTGTCCTG GAAAATCATA GTAACCAGGA
CACTGGTAAC ATGCAAAATA ACATTGCTGT GGAACATATG CCATCAAGTT TGTCAATCCT AGAGTCTACA CAAACTCGTG
TAGCTTCTGT CATCAGAGTA TTCCTAATAC AAAAATATTT AAATAAAACC CATGAGTGCA CCTAGCATTC AAACATAAAG
TCGGGACCCA TTACCAAATG TCAATTGATT CATAGAAAAC AAACTGCCAA TTTGAGAAGG CTAGCAATAA CGAGTGTTTC
ACTTTTTGTG AATGAGTTTT TCTCTGCCTA GAATCTTAAG CTCAGTGCTA GTCTTGTGTT GCTTTTAACA ATGTGTCTAT
GCATATCCCA ATTTAAAACT AATAGTGTCC TTTGTCTTTC GTAATTTTCT TTCTATTTTT ATCTATTTGT TCTCTTATAT
TTTCTCTATT GGTTTTCAAC TCAGTTAATT TAACTTATCT TACAGAATTC TGCTCTATAT TTATTTTTTC CAGATCAATC
GACAATCACT GGCCAACAAT TTTGAATATG TCATGTATGG GAAGCTCTAC AGGATAACAG AGGCTTCTGG GCGTGAAAAG
GCGTATGTCT ATTTCTAGTT TTGAGTTTCA AATGCATCAT ACTTAAAAAT TTACTAAATA ACTAAATTCA TTTTAGGAAC
AATGTGTTCG TCATTTGGAT TTAAATTGTT TTTAATTGAT TGTGAGCATG AAATGAATAA GTGAATAGCA TATTTGTAGT
TCATATAGTG CCGGTTGATT CATTTTGTTT GTAAATTATC TTTGCATTGT ATAGTTCTGT TGTGCCAATT GGTTATGAAT
TATCTTTTGA TTGTGAGATA ATAAGTTATC TGAAGTTACG AGATTTGTAG CAGGTTTTAT TCGTAGTAGC AGCTCCCCTC
GTCAGAGATG AATGCGATCA TTTCATTAAT ACTTTAATGT TGTAGTGAAT GTTACTCTTG TCATTCTTTT GAGTAATAAT
GTTTTTTACG GGTTTTGAAT TGCAGGGAGC TAAATATTTC ATTTGGTGGG CTTCTGATGC TGCTGAAGGG AGATACCTCT
CATTGCAACA AATTTGAGCT TGATCAGAGG TTGTATCTTC TTATAAGGAA AGTCTGAAAA TTGTATTTAA AAGAATGGAG
GATGTGAATC CTTGTTGTGG CAAAAGCACA GCAGCTACTT CCAACTTAAA AAGAAACGAG CATCTCTACT ATGAGTCTCA
AATTTACTAT TTAGGTGTTA TAACAAATTG TATTGGTTCA TGTTGACGAG AGTTTTAAAA TTAAGACTTG CTACTTGTAT
AAGACTTTAG ATTTTAAAAA TTAAAAAAAA ATATGATTCT TATTAGACTT TAAAAATGTT TTAAAAGTAG TGTAACATTA
TGAGAGACTT GAAAGTAAAA TAATATTTCA TGTTAATGTT TTATAGGATT TTTGTATCGG CGATGCTGTC ACAAATACCA
TTATTTTGTC CTTGGTGTTT TTGAGTTCCG GCTTTGGAGA CACTCTTATT CCTTTGTTTA TGCTTTTGTG TCATGGTTCC
TATTGGCTTA TAAAAGTTAT TTCATTTGTG TTCTCATCAA GAATCTTATA ATTTCAAGGT TCTTCTTGGC TTATGAAGAT
TTTTTTTATT ATTTACCTAT CACAACTCTT TTCAATTTAT CAAAATCGTT TGTGTTTCTT GTTTGGCTAT GAAGGCACTT
TCTTTTACGA GAACTTAAGA AGGCACTTAT TAATGGTAGC CCATCAAGGC CATTCTCTTC TATTTGTCTG TATCAAGCTC
ATTTCATTGT GTTTACTTAT TAATGCTCGT CACAGCCACA CACTCTGATT TTAGTGTTCA TCTTTATGTT TTGG

>Vigan.08G343600.01
AGTCTCAACG CAGAGTATGT TCTGACAACA ATCTTCTTCT TGCCGTTCTT CTAATCTTGT TTGCATCTTT TGATTCCTAA
AGCTTCTTCG AAATTCGCCT TTCTCTGCTT TGCGATTTTA TATTTCAGAT TATTGGTAAT TTGTTTCACA AGTTCTTCTG
TTTCAGCCAT GGTGGAGAAT AATCTCTTCG AGGATATTTT CAGAGTAGAA AAACTAAACC CCGATGACAA AAAATTATTC
GATAAAGTTA CTCGAATTGA AGCAAGAAGT GAAAAGTTTG ACATGTTTAT GCACCTTGAT ATCAATTCTG AGATATATCC
ATTAAAGGTT GGTCAGAAGT TCACCCTTGT GCTGGTTTCA TCTCTTAATC CTGATGGAAC ACCAGACACT GGCTATTATA
CACAGATCAA TCGACAATCA CTGGCCAACA ATTTTGAATA TGTCATGTAT GGGAAGCTCT ACAGGATAAC AGAGGCTTCT
GGGCGTGAAA AGGCGGAGCT AAATATTTCA TTTGGTGGGC TTCTGATGCT GCTGAAGGGA GATACCTCTC ATTGCAACAA
ATTTGAGCTT GATCAGAGGT TGTATCTTCT TATAAGGAAA GTCTGAAAAT TGTATTTAAA AGAATGGAGG ATGTGAATCC
TTGTTGTGGC AAAAGCACAG CAGCTACTTC CAACTTAAAA AGAAACGAGC ATCTCTACTA TGAGTCTCAA ATTTACTATT
TAGGTGTTAT AACAAATTGT ATTGGTTCAT GTTGACGAGA GTTTTAAAAT TAAGACTTGC TACTTGTATA AGACTTTAGA
TTTTAAAAAT TAAAAAAAAA TATGATTCTT ATTAGACTTT AAAAATGTTT TAAAAGTAGT GTAACATTAT GAGAGACTTG
AAAGTAAAAT AATATTTCAT GTTAATGTTT TATAGGATTT TTGTATCGGC GATGCTGTCA CAAATACCAT TATTTTGTCC
TTGGTGTTTT TGAGTTCCGG CTTTGGAGAC ACTCTTATTC CTTTGTTTAT GCTTTTGTGT CATGGTTCCT ATTGGCTTAT
AAAAGTTATT TCATTTGTGT TCTCATCAAG AATCTTATAA TTTCAAGGTT CTTCTTGGCT TATGAAGATT TTTTTTATTA
TTTACCTATC ACAACTCTTT TCAATTTATC AAAATCGTTT GTGTTTCTTG TTTGGCTATG AAGGCACTTT CTTTTACGAG
AACTTAAGAA GGCACTTATT AATGGTAGCC CATCAAGGCC ATTCTCTTCT ATTTGTCTGT ATCAAGCTCA TTTCATTGTG
TTTACTTATT AATGCTCGTC ACAGCCACAC ACTCTGATTT TAGTGTTCAT CTTTATGTTT TGG

>Vigan.08G343600.01
ATGGTGGAGA ATAATCTCTT CGAGGATATT TTCAGAGTAG AAAAACTAAA CCCCGATGAC AAAAAATTAT TCGATAAAGT
TACTCGAATT GAAGCAAGAA GTGAAAAGTT TGACATGTTT ATGCACCTTG ATATCAATTC TGAGATATAT CCATTAAAGG
TTGGTCAGAA GTTCACCCTT GTGCTGGTTT CATCTCTTAA TCCTGATGGA ACACCAGACA CTGGCTATTA TACACAGATC
AATCGACAAT CACTGGCCAA CAATTTTGAA TATGTCATGT ATGGGAAGCT CTACAGGATA ACAGAGGCTT CTGGGCGTGA
AAAGGCGGAG CTAAATATTT CATTTGGTGG GCTTCTGATG CTGCTGAAGG GAGATACCTC TCATTGCAAC AAATTTGAGC
TTGATCAGAG GTTGTATCTT CTTATAAGGA AAGTCTGA

>Vigan.08G343600.01
MVENNLFEDI FRVEKLNPDD KKLFDKVTRI EARSEKFDMF MHLDINSEIY PLKVGQKFTL VLVSSLNPDG TPDTGYYTQI
NRQSLANNFE YVMYGKLYRI TEASGREKAE LNISFGGLLM LLKGDTSHCN KFELDQRLYL LIRKV*