GBrowse Details

Vigan.08G342000.01

Basic Information:
Name: Vigan.08G342000.01
Multiple alignment
Variant Information
Position: Chr08:44012028..44016753 (- strand)
Length: 4726
Functional Information:
Description: Similar to protein. [D7LI02, Arabidopsis lyrata subsp. lyrata]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:79.57,65.69,9.99,9.45,28.47,32.65,26.78,9.35
Arabidopsis thaliana homolog: AT2G41945.3
Automatic updates:
Name: NM_001249561 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305518 (LOC100305518), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:44012028..44012523 (- strand)
Length: 496
Type: three_prime_UTR
Position: Chr08:44012524..44012666 (- strand)
Length: 143
Type: CDS
Position: Chr08:44015429..44015474 (- strand)
Length: 46
Type: CDS
Position: Chr08:44015680..44015738 (- strand)
Length: 59
Type: CDS
Position: Chr08:44016103..44016154 (- strand)
Length: 52
Type: CDS
Position: Chr08:44016373..44016423 (- strand)
Length: 51
Type: CDS
Position: Chr08:44016528..44016653 (- strand)
Length: 126
Type: CDS
Position: Chr08:44016654..44016753 (- strand)
Length: 100
Type: five_prime_UTR

>Vigan.08G342000.01 class=Sequence position=Chr08:44012028..44016753 (- strand)
AAAAGATGTC ACAAATTTAT TTTAAATAAA GTAAATTGCG AGAGTATTCA ATATTCTTCT TCATCTTTCT AAACCCTTTC
GTAGCAGCAG AGAGAGAGGA ATGGGTACTC GAGAGGTCTA CGAAGAGAAA CTAAGGAGGG GAAATCTCGA TCGCGATCCT
ACTCTCAACC CCGGCCTTGG TTCCCCACGA TGCCCTCGTT GTCTCTCGCT TCTCAACCCT AATTCCGTTA GTATTTTTCT
CACTTTCTTT TTCTCAAAGT GTTTGTTTAT AACTGCGCTT AAGGTGTTCG ATGAATTGAC TCTACGAATC TGTCTTTGTT
TTACGATCAG GAAAGAGGCG AGTGGACCAT CACTCCCGTC TTGCACGACG CCACTGCTGT CGTAAGTTCC TTCCTTCCCA
ATTGGATCCG CTTTGGGGTT GTCGTATCAT TATATATTGA TTTTAATTCT GTAATGCAGA CGAGGTTGTT GAAACATTGC
GAATTTTGTT TTTAGGATTC AAAGTTCGAA CTGACTTATT TTGGGCTCGA GTTCGGACTG TGCTTTTGTT TTAGTATTCT
TTCTGGCTCC TTATTGTCTT TGTGCTTGCT GTTAAATAGG CTGGCTTGGG GATTGGTGCT ATGCTTAGTG TAGTTCATGG
TTTCAATACA GGTAAGCTTA TTTATTTGTT TTCTTCTTTG TGGTATACCG TTGGGGATTA TATTAGATTT GATATGTAAT
TTCTTTTCTG TATTAATCTC AGGCCATTTA ATTTAGAAAA TGTTTTAAGT ATTTGTTTTT TAGTTAAGAA TTATAATATA
GTAGGACATT TTAATACCTT TGAAATTTTG GTCTGTGATG GAGCCAAATG CTGTCGTCGG ATCCATATGT AGCCGCCCTC
ACGCTGGGGG ATAAGGCTTT GTTGTTGTAT TATAATATTT AGAGATGATG TTAAATCGTT TGTGCTGCTA ATGGATTAAA
ATTAAAATTC ATCTTCCTTC TTGTTGAGGA TATTGCTAAT TATCTTTGGG TGTAGGTTTG CCATATCTTC TAAAGGCTGT
GAAGGGACCG AAGTGGCTTC CACTAGTCGT TGGGGTATGT AGGCCTTGAT TGACTTTTGA GTTTGCTTTG CATATTGAAA
TTACTTGGCT TTATGCTCTG TTTCTGCCGT GAATAAACAT AGCATAGAAG TTGGTTTCAA ACGCCTTCCT TTTATACTGA
GCATATTTGG TGCTTTGATG TACCATAGAG TTCTGTTTTA TACTATAGTT ATCTTATTTC TTTTATGGTT TGTTCACAGA
TTCCTCCATT GTTGATATTC TCAGGCATAA GTTCTGCTTT TGGAGGTAAC TTCTGCACAT GCCTACATCT TAGGCTTATA
TTTGGTTACT TATATTTTTA ATAGGGCTTA CTGAGTCACA GCTAAATATT TGACAACTAT TTGATGGTAG TGGCTTTAAC
ATAAAAGGAA ACATGAACGG ATAGGTTATA CCCCCATTTG TTTCTGCTTT TGCCAATTGG TTTACTTGAA TCAGTTTTGT
AAATCTCAGC CTTGGGTATG TGTGCTAGTA ACATGGAGTA TATACTCCCA GTGTATGAAA TAATATTCAA ACAAATATAA
AAAGCATTTA TGATGACTGA AATGGAAAAA ATAGCCTTAA GAGTCACAAA TAACATATCG TCTAGCTACT ATTGAAAATG
CATGAAAAGA TAATGACTCA GTTCAAGTTT AAGGTGTAAC TGATGATATC AAAGACATTA GTTTTAGTAA CAAAAGAACA
AAAGAGACAT CTTCTTTTAC GTCTATAATC ATCTGGATTG GGAAAAAAAC CGAAGTTTCA CATCAACTTA AAATAATTCC
AAAATTTAGT ATATAATATA AGTGGGGTAA AATCTTCATT TTATAAACTG TTTTTGTTGA ATTAAGTTTA GGTAAGTATG
TATATTCCAC TGAAAACTAA ATACTGGAAA GTTTTCATTC AGATCATGCA AATTTGCTAT TATGGGTGAC TGCATTGCCT
TGGGCAAACA AAGAGAAATT CTTTATCCCT GTTGTATAGG CTAAGGTTAC CGTTATTGAT AGTTTCTTAG TAGAACATCA
GGATCCTTCT AAATACTTGG AGGATTGTGC TCCTTCTTAG TTGGGATGCA ATGTACACCA TACGGAGGAG TATTGTACAT
GCATTAGAAA CCCATAGCCT GTTGGATGTG TTGGATGGAT AGCCTGAGTT GAAGTTTATT TTGAAGTCCA AAATACCTGA
GGGAACATTC AGGATTAGTT GCTCAAGCTA AAGACGGAAG AGTTAACAAT CCACTGGTAT ATTCTAGAAG AAAGAAAAAG
GTAAGTGAGA TGGTAGTTAG TCAGTGATGC TCAAGTTGTC AGAAGTGAGG GACTGGATGG TTTATGGGGA AGAGATGTGG
AAAGCGGAGG CCATTAAAGT GAGTAGTATT TCTCTGCTGG AGTGTGGAAC AAGGATATTG TCTTCCTGTA GTAAGATTCA
AAAGAGAGCT TTTAGTAGAT CGTTACATGG GGAAAATTCT AGAAAGCTTT TAATTGCTCG TTACATTAGG AAATTCGAAA
ATCCTTTTGA GGAGTTTCTT AACCTAAGGC AAAGGGGGTC TATTGAACAA TTTATCAAAA CATTGAAGCT AATATCTTTT
GATCCACGTC ATTCCACTTG CCATAGCAGT ATATAAACTT TTGTTGGAGT GGCTGCAGCC TGATGAGCAT TGGAAAATTA
CAAACAAAAA TTGGTTGAAG GTTCACCATG GACATGGGGC ATTTTACTTG TTAGGCATTG CTCCACGTTC ATGCTGATGT
GAACTGATGT CGGATGAAAG ATATTGCAGT TTTGAATCTC AAGGACTAAT TTCTAAATTT ATAAATCTTA GGGACTACAG
TTAGTGATCG TAACAACTTT TAGGGACGAA AGTGAGAATG TACAACCTCA AGCATGGAGA GGCTGTACAC CAGTGATTAG
TGAAATGGAA GGGGAAATCT GTTGATCACT TAGTCAATTC CCCACATTTT GTCTTGAGGA CAAGGAAATT CTTCAACAGG
AGGGCAGTGA TAGGGTCCAT GAATCTGAAG GAGAGTTAAT GATATAAGGC CTGAATTTTG GAGGGTTTAC CAGAGGAGTG
CAGAAGGGGT TACTAGCGGA GATTCAATAA ATGGCTAGGC TGAGGTTAAA CATTTTGTTA TGCCAAAATT AGGGGTAGCG
TCAGGTGGGT TTGAGAGGGA GAGATTTGAA TTTTACAATA CTCCTGTAGC GATGTGTAAA GAGCTTCTTC TCCAAGGTCT
GTCCGAGCCT CTCTTTTTTG TTCTGGTTTA CGTATATTTC ACTGAAGCTT ACTATAATAC TGGGGATTTT TCTTTCAGTT
CTTGGCGTTT TCCCTAGTAT TTTGCTTTTC TGTCCAGTAT ATTTAGTTCG TTACAAGTCA GCCCTTACCA TCTTGCATCC
TGCAGTCATG AACAATTGAC CATACATGCG AACCTGACTG TTTGAAGAGT ATAAAGGAGT TACCCCCTTA AATTAAAAAA
ATTAATGGGT TGGTGGAAAA TAGGTTTAAG TGAGAACAAA GTAGAAACTT CCTTTAGCAT ATGCAAGAGC AAAATAGAAG
TCTTGCCATC TTCATAGACT CCAAGAGCAA ATTAGAAAAG GGTTTTTTGT TTAAAAAGAA ATGAAATAGA CAATAGACTC
CAATTTTGAG GAAGCATTGT GGTTGTAGTG CTGTGTTTAG GGTATATGAC TATTCATGCA AAAACTTGAC AACCGAAATA
GGTGAATCTA GTGGAGCTTT GCAGTAGTTG GTGTCCCTAA ATGGCATAGC TTTGCTGCAA TTGCGCTTTT ATTTGCTTGA
ATTGACTACT TTAGCATTAA GATGTAATAT TTGGTAATTG ATGCATGAAA TACAGACTCT ACTATCGATA TTACTTATAG
ATTGAACTGA TGTTTACAGT AGAATATGTT ACTTGCCATG TGGTATGTCA TACACCTTTC ATAAGAAAAA TCACTTAGAG
GTCTTTTAAG TCTTGTAGTT TATTGTGTCG ATGATACTAT ATGCTTTAAA TACCTTTTAG TAATGTGGAT ACATGTGGAA
ATTTTAGGAT ATGTGCTTCC AAAGTTCACT CAACTCACCG TAACATCCTA TTATGCTGCA TCGAGTGCCT CACATTATGG
AATCTCTCTT GTTACCCGAC ATATTGAAGA GAACTACAGC TCAAAAACTC AGCATCTCAA GAGGCTCTGA TGATATTCCT
TTCGGGTGTA CTTACAAGGA AAATACATTA CCTGGCAATT TTGTCTGCAT AAACGTCCTG TGGATGGTTA GGATTGTTAA
ACCCTAGTAA CATTTTTGTT TCTCCTTACG GAAATGCTTA TATGTGAATA ATCCTTGTTT ATATTTTACT ATTAAGCTTT
GGTAATAAGA AGTCCATTTA TTTAACTGTA GTGTGTAGTG TTTCAAGGGC AAGCAACTAT GAAAAATAAT TAACAAAAAA
TCTAGTCAAC CTTATTTTTA TAGTTATTTT ATCTGTAAGG TTAATTTACA TAAAACTAAT TCTAGTCTGC AGCAGTTGAA
TGGGCCTCAC ATGCTCTGCT AGGGTATATT GGTGGTTCTA CTCTCCTAAA TGATTTAGTT ATTGTTTCTC TATCTCTGTA
CTTTATTCTT ACTCATAATA TAAAACATGA TTGACATGCC TTTTCTCGTA ATTTAATTTG TTTAGGTTAC GGAAGTGAAT
GCGTTC

>Vigan.08G342000.01
AAAAGATGTC ACAAATTTAT TTTAAATAAA GTAAATTGCG AGAGTATTCA ATATTCTTCT TCATCTTTCT AAACCCTTTC
GTAGCAGCAG AGAGAGAGGA ATGGGTACTC GAGAGGTCTA CGAAGAGAAA CTAAGGAGGG GAAATCTCGA TCGCGATCCT
ACTCTCAACC CCGGCCTTGG TTCCCCACGA TGCCCTCGTT GTCTCTCGCT TCTCAACCCT AATTCCGAAA GAGGCGAGTG
GACCATCACT CCCGTCTTGC ACGACGCCAC TGCTGTCGCT GGCTTGGGGA TTGGTGCTAT GCTTAGTGTA GTTCATGGTT
TCAATACAGG TTTGCCATAT CTTCTAAAGG CTGTGAAGGG ACCGAAGTGG CTTCCACTAG TCGTTGGGAT TCCTCCATTG
TTGATATTCT CAGGCATAAG TTCTGCTTTT GGAGGATATG TGCTTCCAAA GTTCACTCAA CTCACCGTAA CATCCTATTA
TGCTGCATCG AGTGCCTCAC ATTATGGAAT CTCTCTTGTT ACCCGACATA TTGAAGAGAA CTACAGCTCA AAAACTCAGC
ATCTCAAGAG GCTCTGATGA TATTCCTTTC GGGTGTACTT ACAAGGAAAA TACATTACCT GGCAATTTTG TCTGCATAAA
CGTCCTGTGG ATGGTTAGGA TTGTTAAACC CTAGTAACAT TTTTGTTTCT CCTTACGGAA ATGCTTATAT GTGAATAATC
CTTGTTTATA TTTTACTATT AAGCTTTGGT AATAAGAAGT CCATTTATTT AACTGTAGTG TGTAGTGTTT CAAGGGCAAG
CAACTATGAA AAATAATTAA CAAAAAATCT AGTCAACCTT ATTTTTATAG TTATTTTATC TGTAAGGTTA ATTTACATAA
AACTAATTCT AGTCTGCAGC AGTTGAATGG GCCTCACATG CTCTGCTAGG GTATATTGGT GGTTCTACTC TCCTAAATGA
TTTAGTTATT GTTTCTCTAT CTCTGTACTT TATTCTTACT CATAATATAA AACATGATTG ACATGCCTTT TCTCGTAATT
TAATTTGTTT AGGTTACGGA AGTGAATGCG TTC

>Vigan.08G342000.01
ATGGGTACTC GAGAGGTCTA CGAAGAGAAA CTAAGGAGGG GAAATCTCGA TCGCGATCCT ACTCTCAACC CCGGCCTTGG
TTCCCCACGA TGCCCTCGTT GTCTCTCGCT TCTCAACCCT AATTCCGAAA GAGGCGAGTG GACCATCACT CCCGTCTTGC
ACGACGCCAC TGCTGTCGCT GGCTTGGGGA TTGGTGCTAT GCTTAGTGTA GTTCATGGTT TCAATACAGG TTTGCCATAT
CTTCTAAAGG CTGTGAAGGG ACCGAAGTGG CTTCCACTAG TCGTTGGGAT TCCTCCATTG TTGATATTCT CAGGCATAAG
TTCTGCTTTT GGAGGATATG TGCTTCCAAA GTTCACTCAA CTCACCGTAA CATCCTATTA TGCTGCATCG AGTGCCTCAC
ATTATGGAAT CTCTCTTGTT ACCCGACATA TTGAAGAGAA CTACAGCTCA AAAACTCAGC ATCTCAAGAG GCTCTGA

>Vigan.08G342000.01
MGTREVYEEK LRRGNLDRDP TLNPGLGSPR CPRCLSLLNP NSERGEWTIT PVLHDATAVA GLGIGAMLSV VHGFNTGLPY
LLKAVKGPKW LPLVVGIPPL LIFSGISSAF GGYVLPKFTQ LTVTSYYAAS SASHYGISLV TRHIEENYSS KTQHLKRL*