GBrowse Details

Vigan.08G317800.01

Basic Information:
Name: Vigan.08G317800.01
Multiple alignment
Variant Information
Position: Chr08:40949030..40953359 (+ strand)
Length: 4330
Functional Information:
Description: Similar to uncharacterized protein. [C6TI31, Glycine max]
InterPro: CWC16 protein (IPR007590)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:68.35,43.06,18.30,24.45,17.03,7.55,25.49,13.22
Arabidopsis thaliana homolog: AT1G17130.2
Automatic updates:
Name: NM_001289360 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max unknown LOC100816349 (LOC100816349), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:40949030..40949288 (+ strand)
Length: 259
Type: five_prime_UTR
Position: Chr08:40949289..40949486 (+ strand)
Length: 198
Type: CDS
Position: Chr08:40949765..40950049 (+ strand)
Length: 285
Type: CDS
Position: Chr08:40950270..40950335 (+ strand)
Length: 66
Type: CDS
Position: Chr08:40951047..40951100 (+ strand)
Length: 54
Type: CDS
Position: Chr08:40951200..40951304 (+ strand)
Length: 105
Type: CDS
Position: Chr08:40952179..40952254 (+ strand)
Length: 76
Type: CDS
Position: Chr08:40952957..40953126 (+ strand)
Length: 170
Type: CDS
Position: Chr08:40953127..40953359 (+ strand)
Length: 233
Type: three_prime_UTR

>Vigan.08G317800.01 class=Sequence position=Chr08:40949030..40953359 (+ strand)
TTTCTAACCC GACCTCATGG GCCAAACCAT ATAAGAGGCA AAACTGACAA CTCTACCCAA ATCGCAATCG CGTACCTCTA
TTTTCTTTCG TGTTTCTTCT TCTTTACCAC CGTATTTTCT CCGTCGTCGC GTTCTCGCCG TGCCTAGCCT CGCATCGCCG
GCTGTCGCCG TGCCTCACCT CGCCCTGCCA TCTCCGTGCC TCGCCGTCGT GCTTGGGTAG CGTCTCATCA CCTGGTTTTC
CTTCCAATTT TTTAGAAAGA TGGGAGAGAG GAAGGTTTTG AACAAGTATT ACCCTCCGGA CTTTGATCCC TCCAAGCTTC
CCAGAGCCAG AAGGCCTAAG AACCAGCAGA TTAAAGTTCG CATGATGCTT CCCATGAGCA TTCGATGTAA TACTTGTGGC
AATTACATCT ACAAGGGCAC CAAGTTCAAT TCCAGAAAAG AAGATGTTAT TGGCGAGGTG TGGTTATTTT TAAGTTCACT
AACTTTTCAA TCTTTATTTC GTTTTCTTCC GTGTAATTCT ATGTACATTC TTAAAGGAGA TGCCGCTGGT GTTTATCTTT
TGGATTCCTT CAATCTTATG ATTGGTTATC TTTTGGATTT TGTATTGGAT TCCTTCAATT GCTTGTGTGT TGTTGTTTAA
TATATTGGTA GGATTCAGAG GTTCATATTT GCTTATTGCT TCATGTGTAA TTTGATCAAT GACGTTGACT TTGAATTATT
TGCATTTTTT CGCAGACGTA TCTTGGAATT CAAATATTCA GATTCTATTT CAAATGCACC AAATGTTCAG CTGAAGTTAC
CATGAAGACT GATCCGCAAA ATTCAGATTA TATTGTTGAA TCCGGTGCAA CCAGAAATTT TGAGCCTTGG CGTGCAGAAG
ATGAAGAAGC TGATAAAATG AAGCAGAAGA GGGATGCTGA AGAGATGGGA GATGCTATGA AATCATTGGA AAATAGAACC
TTGGATTCTA AAAGGGAGAT GGACATCCTA GCTGCATTGG ATGAGATGAA GTCAATGAAG GTAATTACTG TTGTGACTGA
ATATATATAA TGATAAAATA AATTTGAAGC TTGCTCATAA ATGATTCAAT AGGGATGCGA GCATTATAAT TGTGGAATAT
GCTTCATTTT TCTGTAGAGG AATAACATTT CACACCATTT TTTAATTAAT AATTACATTT GTGCGTGGAC ATAAGGTCTG
TTTGTGGTAA GTAGTTGCTA ACATGACTCT TTCATTTCAG TCTAGGCATG CAACTGTTTC TGTTGATGAA ATGTTGGAGG
CTCTGCAGCG TACAGCAGCT GATAAGGTAT GAGAAAACTT GTCATATAAT TATTTGAGAA CTTTTTCTTT TTGAAGCAAA
GATTAATTAT AATTGGTTTG AAATGTAATT TATCGGTAGT CATTCCTTGA TATAATAAAG TATTGGTAAA AGTAGAAAAT
TTAGGCCAGA GACCGTGAGT TGATTATAAA ATGATTACTT TCAGCGTAGT TCTCTCCATA GTCCATTTTT TAGCTATCCT
TGACTATAAA AAAAATTAAC TGTTATTGTA TATTACTAGT TGAAATACTC AGTATTTTAG TATCTATTAT TTTCTTTTTC
ACTTCTTAAT AAGAATGTAT AAAGTTAAAA AAAAATATCA ATGCCTAACT ATTTTTCTAA AGTGAGATAT AAAATGGAAC
AAAAAATACT TATCTAAAGT GACAAAAGAA TGGAAGTATA TTTGGAGTCT GTCATGACTT GGGTCATCTT TCTGATTAGA
TGCTCACAAA ACCAAATTTT GGGTTTGCTG TTTGGTATAT TCTTGTATTC TCTTGCGACA ACCTTTGTTG CAACTCCAAT
GATCCCTTGA TGCCTTACCC TGAACTTATA CAATTGCAAT ATAACCCATT TAAACATTGA TTGTCCACTA TTTCTTATTC
TGATATTTGG CTGTGACATA AACATGATAC GTAATTTTGA AGCATTGTTT AATTATCATC TTCCTCAATA ATTCAAATTC
ATTTATAATG ATTTCAGGAG AAGAGGCTGG AAGAAGAAGA TGAAGCAATG ATAAAATCGG TTGTCTTCCA TGTAAGTATT
ACAATCCTGC AGTTTTAGTT CTCTTCCTTC TAGTTACTTT TGTTTCCTGT TTTTTTAATC CTGGTTTTTG CTGTATACTA
TATTTACCAG AATTCAGGAG GTTATGTCAA AAGAATTCGT GATGAAGATA TTGAAGCCGA AGAGCAGTTA GATCCGCTTT
CACATGGACA TGGTGAAACA AGTTATAATA TGAAGGTATA TGTCTGCTTG CTTGCAGTAA TGTATTTTTT TTTGTTGTCT
TGTTGGCAAA ATAAATTATC ATCATTATAC ACCAACTCAA TTATGTTTTC ATCACACTCT GTTCTTAACT ATTGAAATTC
AAGACTTAAC CTTCAACCTC ATATTGCTCT GAACTATGAT ATTCCTGGTT TTCAGTAATT ACTGTTCTGA GTCATTTCTC
GGTTCACTTT CACTAAACCA GCTGTCTCTG AGTTTGATTT CACTATTCAT TCATAAATTT TGTATGGCAA GCAGGATCAA
TGAAAATTTC TTTTTAGGTT CCGTTAACCT TTCAATTTTT TTATAAGGAA AGAAACAAAA AATTGTAGAA CTGTCTACAG
GATCATAATG GCTGCTTGAA TGCATTTGTT TTTTGTTTTT TTGGAGGCAG TCAGAAAATG GAGTTGCAGT TAAAATATCT
GGGAAAAAAA TATGATAATC TAGAATTTGG AATTACATAT TTCTAGCTTC TTTGTGGTGT TCTGCTGTTG GTTTTTTTAT
CTTAAGGTGG TTTTCTTAGA TTTACAGATG GATATTGGCA GGCTTTGTTG CATGTTTCTT GATCTTTATT TTTTTTCCTT
TTACCATTTA ATATTTGTCT CTCTTAAAAT AAATTATTGC TTAGAAAAAA AAATTCAAAG GAAGTTTTCT ATTTTTATTT
TCTTTTTGAG TGTGGACTTT TTTGACTTGA AATATGTGTG AAGTTCATAA AATTTTCTGA AATTTATAGG TGAAATTTTT
CTAAATTTAC AAATTTATCA TCCGTATGTG GTCTTTTATT CATCTAAAGC ATCAAATCTT GTACAAAAAC AACTGTTTGA
GTGTGTGTTT GTGTTATATA TGTGTGCAGA AGCAAAAGAT GTCTGAAGAT CATCCAAGCA AACCAACTGA CTCTCTTACA
AAAGCTACTT TGGATGGCAA ACAAGGTATG TACTTTTCAC GTAATGCATC GAAATTCACC AATGCATTGA AATGTTATCG
CTCAGTGAAG TCATCACTAT TAAAAGAGAA TTGACATGAA TGCAGATCAA TTTGAAGGAC CATCTTCAGT TGTGTATCAT
ATCAATTGAT CTGGATTTAC CTCTTACATT TGTTATGTCA CCTTCACTTG CTAGTATCAG TCAAATAACC CAAGCCACAT
TACCCATCAT CTGCACAATT GGTAGTATCA GTCAACGAAC CCAATCCACT TTACCCTTCA TCTGCACTAC ATTACATTAA
TGTTATACAA GCATCCCCTC CTTCCTATCT GTAAGGAGAT ATCATAATAT TAATTTACTC TGTAAAATAT GTTCTGCATC
ATAGAAATGT AAAGATAAAA CACATTTATA ATAAACTGAA CATAACTACC GGAACACAAT AACCAATGGG AAGTTATTTC
ACTCTATCCT TTACACTATC AAAAAGAAAA CCTTAAGCTT TGCACAATTC TGATCTTTGT CTAATATTTA TAGAGCCAGG
TTCGTAACAC TAGTATGATT TGCAGAAAAT CGAAAAGCTA TGCACACCAT TCACACCTGC ATTTTTTATT TTTAGTCAGG
TTTAATTGGT TACGTTTAAT ATTTTTTCTT TTGTTTAATA ATACTATCTG TAGGAATGCA AAGTTAATAT GTTTTGGTTA
TTTGTAGAAA GCGAACGAAA TGGTGGAAAA CTTAATTCTT TGGTGAGAAT TTCTATCACC AAGAAATCAG ATGTTAAAAG
TCCTGGAGAA CCAGAACCAG AGAAAAAGGA TATTAGAACA AATACTGGAT TACAATCTTT GTGTCAAAAT TATGGAAGTG
ACGAGGATGA GGATTAGGTC ATAAATATTG AAGTACTATT TGAACCATTG CACTTATTTG TACCATTGCT CTTATTTCTG
ATTGTTTAGT TGTATTAGTG ATGGATTGTG ATTCTTCCGA AAGCTAAAAT ATTGTGATAC TTGGTTTCCG TTCTGTTTGT
ATTCTTGTTA CGTTAAGTCT GTGTAAAAAC TATACTTATA TCTTGGGAGT TTTAAAAATA AATAAAATAT ATTTATTATA
TGAATTTAAA 

>Vigan.08G317800.01
TTTCTAACCC GACCTCATGG GCCAAACCAT ATAAGAGGCA AAACTGACAA CTCTACCCAA ATCGCAATCG CGTACCTCTA
TTTTCTTTCG TGTTTCTTCT TCTTTACCAC CGTATTTTCT CCGTCGTCGC GTTCTCGCCG TGCCTAGCCT CGCATCGCCG
GCTGTCGCCG TGCCTCACCT CGCCCTGCCA TCTCCGTGCC TCGCCGTCGT GCTTGGGTAG CGTCTCATCA CCTGGTTTTC
CTTCCAATTT TTTAGAAAGA TGGGAGAGAG GAAGGTTTTG AACAAGTATT ACCCTCCGGA CTTTGATCCC TCCAAGCTTC
CCAGAGCCAG AAGGCCTAAG AACCAGCAGA TTAAAGTTCG CATGATGCTT CCCATGAGCA TTCGATGTAA TACTTGTGGC
AATTACATCT ACAAGGGCAC CAAGTTCAAT TCCAGAAAAG AAGATGTTAT TGGCGAGACG TATCTTGGAA TTCAAATATT
CAGATTCTAT TTCAAATGCA CCAAATGTTC AGCTGAAGTT ACCATGAAGA CTGATCCGCA AAATTCAGAT TATATTGTTG
AATCCGGTGC AACCAGAAAT TTTGAGCCTT GGCGTGCAGA AGATGAAGAA GCTGATAAAA TGAAGCAGAA GAGGGATGCT
GAAGAGATGG GAGATGCTAT GAAATCATTG GAAAATAGAA CCTTGGATTC TAAAAGGGAG ATGGACATCC TAGCTGCATT
GGATGAGATG AAGTCAATGA AGTCTAGGCA TGCAACTGTT TCTGTTGATG AAATGTTGGA GGCTCTGCAG CGTACAGCAG
CTGATAAGGA GAAGAGGCTG GAAGAAGAAG ATGAAGCAAT GATAAAATCG GTTGTCTTCC ATAATTCAGG AGGTTATGTC
AAAAGAATTC GTGATGAAGA TATTGAAGCC GAAGAGCAGT TAGATCCGCT TTCACATGGA CATGGTGAAA CAAGTTATAA
TATGAAGAAG CAAAAGATGT CTGAAGATCA TCCAAGCAAA CCAACTGACT CTCTTACAAA AGCTACTTTG GATGGCAAAC
AAGAAAGCGA ACGAAATGGT GGAAAACTTA ATTCTTTGGT GAGAATTTCT ATCACCAAGA AATCAGATGT TAAAAGTCCT
GGAGAACCAG AACCAGAGAA AAAGGATATT AGAACAAATA CTGGATTACA ATCTTTGTGT CAAAATTATG GAAGTGACGA
GGATGAGGAT TAGGTCATAA ATATTGAAGT ACTATTTGAA CCATTGCACT TATTTGTACC ATTGCTCTTA TTTCTGATTG
TTTAGTTGTA TTAGTGATGG ATTGTGATTC TTCCGAAAGC TAAAATATTG TGATACTTGG TTTCCGTTCT GTTTGTATTC
TTGTTACGTT AAGTCTGTGT AAAAACTATA CTTATATCTT GGGAGTTTTA AAAATAAATA AAATATATTT ATTATATGAA
TTTAAA

>Vigan.08G317800.01
ATGGGAGAGA GGAAGGTTTT GAACAAGTAT TACCCTCCGG ACTTTGATCC CTCCAAGCTT CCCAGAGCCA GAAGGCCTAA
GAACCAGCAG ATTAAAGTTC GCATGATGCT TCCCATGAGC ATTCGATGTA ATACTTGTGG CAATTACATC TACAAGGGCA
CCAAGTTCAA TTCCAGAAAA GAAGATGTTA TTGGCGAGAC GTATCTTGGA ATTCAAATAT TCAGATTCTA TTTCAAATGC
ACCAAATGTT CAGCTGAAGT TACCATGAAG ACTGATCCGC AAAATTCAGA TTATATTGTT GAATCCGGTG CAACCAGAAA
TTTTGAGCCT TGGCGTGCAG AAGATGAAGA AGCTGATAAA ATGAAGCAGA AGAGGGATGC TGAAGAGATG GGAGATGCTA
TGAAATCATT GGAAAATAGA ACCTTGGATT CTAAAAGGGA GATGGACATC CTAGCTGCAT TGGATGAGAT GAAGTCAATG
AAGTCTAGGC ATGCAACTGT TTCTGTTGAT GAAATGTTGG AGGCTCTGCA GCGTACAGCA GCTGATAAGG AGAAGAGGCT
GGAAGAAGAA GATGAAGCAA TGATAAAATC GGTTGTCTTC CATAATTCAG GAGGTTATGT CAAAAGAATT CGTGATGAAG
ATATTGAAGC CGAAGAGCAG TTAGATCCGC TTTCACATGG ACATGGTGAA ACAAGTTATA ATATGAAGAA GCAAAAGATG
TCTGAAGATC ATCCAAGCAA ACCAACTGAC TCTCTTACAA AAGCTACTTT GGATGGCAAA CAAGAAAGCG AACGAAATGG
TGGAAAACTT AATTCTTTGG TGAGAATTTC TATCACCAAG AAATCAGATG TTAAAAGTCC TGGAGAACCA GAACCAGAGA
AAAAGGATAT TAGAACAAAT ACTGGATTAC AATCTTTGTG TCAAAATTAT GGAAGTGACG AGGATGAGGA TTAG

>Vigan.08G317800.01
MGERKVLNKY YPPDFDPSKL PRARRPKNQQ IKVRMMLPMS IRCNTCGNYI YKGTKFNSRK EDVIGETYLG IQIFRFYFKC
TKCSAEVTMK TDPQNSDYIV ESGATRNFEP WRAEDEEADK MKQKRDAEEM GDAMKSLENR TLDSKREMDI LAALDEMKSM
KSRHATVSVD EMLEALQRTA ADKEKRLEEE DEAMIKSVVF HNSGGYVKRI RDEDIEAEEQ LDPLSHGHGE TSYNMKKQKM
SEDHPSKPTD SLTKATLDGK QESERNGGKL NSLVRISITK KSDVKSPGEP EPEKKDIRTN TGLQSLCQNY GSDEDED*