GBrowse Details

Vigan.08G301800.01

Basic Information:
Name: Vigan.08G301800.01
Multiple alignment
Variant Information
Position: Chr08:38394765..38396947 (+ strand)
Length: 2183
Functional Information:
Description: Similar to glycine cleavage system H protein 2, mitochondrial isoform 1. [XP_003556280.1, Glycine max]
GO: Biological Process: glycine catabolic process (GO:0006546)
Biological Process: glycine decarboxylation via glycine cleavage system (GO:0019464)
Cellular Component: glycine cleavage complex (GO:0005960)
InterPro: Glycine cleavage H-protein (IPR002930)
2-oxo acid dehydrogenase, lipoyl-binding site (IPR003016)
Single hybrid motif (IPR011053)
Glycine cleavage H-protein, subgroup (IPR017453)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:29.81,12.40,40.77,12.68,209.37,98.79,82.20,74.72
Arabidopsis thaliana homolog: AT2G35120.1
Automatic updates:
Name: NM_001250152 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max glycine cleavage system H protein 2-like (LOC100305815), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255478 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max glycine cleavage system H protein, mitochondrial-like (LOC100792708), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:38394765..38394812 (+ strand)
Length: 48
Type: five_prime_UTR
Position: Chr08:38394813..38394891 (+ strand)
Length: 79
Type: CDS
Position: Chr08:38396060..38396319 (+ strand)
Length: 260
Type: CDS
Position: Chr08:38396543..38396668 (+ strand)
Length: 126
Type: CDS
Position: Chr08:38396669..38396947 (+ strand)
Length: 279
Type: three_prime_UTR

>Vigan.08G301800.01 class=Sequence position=Chr08:38394765..38396947 (+ strand)
ACCACAAAGC AAAAGTGTTG AACTCACAAA TACACAGAGA AGAGAGAAAT GGCTTGCAGG CAATTATGGG CTTCAAGGGC
TGCTTCTTAT CTCAGGATCT CTGTCTTCAA CAGAGGCTTT TCCAATGGTA ACATGCTTTC TCCTTAACCC TTTTCTTCTC
TCTCTGTTAT GCTGCGATCT GCTTTTTATT TTTTTTCATT CATCATTCAA AATTTATTTT TCTTTTTTTG TGCTATGATG
TGGATCTTGA TCTATGTATT TGCTTTAATG ATCTGAATCT AGGGTTTCTT CTTTTCGAGA TTGGAAATTC ATATTTCTTT
GTACGATTTC TGATGTATGA AGTGCATTCA TCATTGTGCT AACTTATAGT GCGTGGATTC AGATCTCTGA ATTTGATGGC
ACTGTTCACA TTTTTTGTTT TTTTGCACCG TTTCCTTGAT GTTATTATCT ATGCATGTAC TTTAATGGCA CGGAGCTTTC
TAACGGTGGT GTGGGGAAAG TGCACCCACC CACCCTCCCT GAAAAGTAGC ACACAAATAA TGCGTCTAAT CTTTTATAAT
ATTATCTTCA CATTCTTAAT GGCAGTATTA TCTGTGACCT ATAGAATATG TTGCGTTCTG AACCTGGTAT GATCAAACAG
GAGGATGACA AGGGTGGAGC TGGTAATAGA TAGTGTATAA TGATAGAAGG GGTAAGAGGG ATTTTAATTA GGATAAATTC
CATTAAAATT TAAAACACTT GACATTTGTA AGCGTTTTCA GAGTTTATTA ATGAAAGTTC GAAACATGGG TTGTAGCTAT
GCTGTTTGCT AGATTTAATA CTAGATCAGA GAGAAAGGAT TTTTGTTGTT TTCTAGTGCA TTTTGGAAAT TTGCTAGAAA
ATAATTTTGG GTGTTTTGGC TTTTTGAAGT TAACCATTGC CTTTTTTCGG CAATGCATTT TTGGGATACA TTTATCAATT
TCTTGTCGTT GAGTAATATT TTAAATTTTA CCTAACTTGA TCCTTTATAA TCATTCATCC TAATTGGCTG GGTAAACATT
TCCATCACAC AACTGCTTAG TTTCATATCG TAAATGTAAA CATCTCAAGG GCTTTGATGT TTTTCTGACT CTTATCCACA
TCTGCAATTA TATGTCAAAT GTAATATTGC ATTTGAACCT GTAGGATATG GAAATGTTTG GTTGTTTTCG CAGTAGTTGC
AAATAAGATT TATGTAGTTC ATCTACATAA AGGCTTCCAT ATATGAAAAA GAACATCTAA CTTGCATTGT TGGCTTCGTC
CATGTTTACT TGCAGTTGTT AAAGATCTGA AGTATGCTGA TTCCCATGAG TGGGTCAAGG TTGATGGAAA TTCTGCAACC
GTTGGCATAA CTGATCATGC CCAAGATCAT TTGGGTGATG TTGTGTATGT TGAGTTGCCT GAAGTGGGAG CCACCGTGAC
ACAAGGAGAC AGTTTTGGTG CAGTTGAAAG TGTGAAGGCA ACTAGTGATA TTAACTCTCC TGTTTCAGGA AAAGTGGTCG
AAGTTAATGA AGAGCTTAGT AGCTCTCCTG CTTTGGTGAG TTTTTTTGCC TAATTCTTAA AGAACAACAT TTTACATGAA
AGACAAAATG TGTATGCTGA GTTTAGAGGC ACTGACTATT CTCCCCCCTT TTTGTACTTT GTTGTTTTTG TATGCTACAT
CTTGGATCAC TACGCCTATG TATCAATGAA GTATTGCAAT GAATACTTTT TCTATAAACA CTAAGAGTTT TCATGTTGTC
CTACATTTCT TCACACAGGT AAACTCAAGC CCTTATAAAG ATGGATGGAT AATTAAGGTT GAACTGTCCG ACAGTGGCGA
ACTAAACAAT TTGATGGATT CAGAAAAGTA TTCCAAATTC TGTGAAGAAG AAGATTCACA TTAAGATCTT TCAGCACTCT
TCCATGGTGT TGTACATCAT GTTCATGTTT TAATTGGGAA AGCTAAGAAG GGCTTGTTCC CTTTTCTACA TGTCATGTCT
TTACTTTTCT ATTTTTATTT TTCCTGAAAT TCAGAATCAG TGAGATGATT TTTCACTCTT TGCAATGGAA ATATGAATTT
GATAATGTGG TAAATTCATG ATTAGTTTTC TTTATTAAGG TATATCAATT TTGTTAGTTG AATGTAATAA TTGAGAAATA
AGATGAGACA TTGGTTATCA AGA

>Vigan.08G301800.01
ACCACAAAGC AAAAGTGTTG AACTCACAAA TACACAGAGA AGAGAGAAAT GGCTTGCAGG CAATTATGGG CTTCAAGGGC
TGCTTCTTAT CTCAGGATCT CTGTCTTCAA CAGAGGCTTT TCCAATGTTG TTAAAGATCT GAAGTATGCT GATTCCCATG
AGTGGGTCAA GGTTGATGGA AATTCTGCAA CCGTTGGCAT AACTGATCAT GCCCAAGATC ATTTGGGTGA TGTTGTGTAT
GTTGAGTTGC CTGAAGTGGG AGCCACCGTG ACACAAGGAG ACAGTTTTGG TGCAGTTGAA AGTGTGAAGG CAACTAGTGA
TATTAACTCT CCTGTTTCAG GAAAAGTGGT CGAAGTTAAT GAAGAGCTTA GTAGCTCTCC TGCTTTGGTA AACTCAAGCC
CTTATAAAGA TGGATGGATA ATTAAGGTTG AACTGTCCGA CAGTGGCGAA CTAAACAATT TGATGGATTC AGAAAAGTAT
TCCAAATTCT GTGAAGAAGA AGATTCACAT TAAGATCTTT CAGCACTCTT CCATGGTGTT GTACATCATG TTCATGTTTT
AATTGGGAAA GCTAAGAAGG GCTTGTTCCC TTTTCTACAT GTCATGTCTT TACTTTTCTA TTTTTATTTT TCCTGAAATT
CAGAATCAGT GAGATGATTT TTCACTCTTT GCAATGGAAA TATGAATTTG ATAATGTGGT AAATTCATGA TTAGTTTTCT
TTATTAAGGT ATATCAATTT TGTTAGTTGA ATGTAATAAT TGAGAAATAA GATGAGACAT TGGTTATCAA GA

>Vigan.08G301800.01
ATGGCTTGCA GGCAATTATG GGCTTCAAGG GCTGCTTCTT ATCTCAGGAT CTCTGTCTTC AACAGAGGCT TTTCCAATGT
TGTTAAAGAT CTGAAGTATG CTGATTCCCA TGAGTGGGTC AAGGTTGATG GAAATTCTGC AACCGTTGGC ATAACTGATC
ATGCCCAAGA TCATTTGGGT GATGTTGTGT ATGTTGAGTT GCCTGAAGTG GGAGCCACCG TGACACAAGG AGACAGTTTT
GGTGCAGTTG AAAGTGTGAA GGCAACTAGT GATATTAACT CTCCTGTTTC AGGAAAAGTG GTCGAAGTTA ATGAAGAGCT
TAGTAGCTCT CCTGCTTTGG TAAACTCAAG CCCTTATAAA GATGGATGGA TAATTAAGGT TGAACTGTCC GACAGTGGCG
AACTAAACAA TTTGATGGAT TCAGAAAAGT ATTCCAAATT CTGTGAAGAA GAAGATTCAC ATTAA

>Vigan.08G301800.01
MACRQLWASR AASYLRISVF NRGFSNVVKD LKYADSHEWV KVDGNSATVG ITDHAQDHLG DVVYVELPEV GATVTQGDSF
GAVESVKATS DINSPVSGKV VEVNEELSSS PALVNSSPYK DGWIIKVELS DSGELNNLMD SEKYSKFCEE EDSH*