VIGGS:GBrowse

Vigan.08G297000.01

Basic Information:

Name:	Vigan.08G297000.01 Multiple alignment Variant Information
Position:	Chr08:37413908..37415153 (+ strand)
Length:	1246

Functional Information:

Description:	Non-protein coding gene.
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.27,0.00,0.00,0.00,0.24,0.00

Automatic updates:

Name:	NM_001252749 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max protein SELF-PRUNING-like (CEN1), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001253100 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max CEN-like protein 2-like (CEN2), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:37413908..37414140 (+ strand)
Length:	233
Type:	exon

Position:	Chr08:37414357..37414418 (+ strand)
Length:	62
Type:	exon

Position:	Chr08:37414852..37414892 (+ strand)
Length:	41
Type:	exon

Position:	Chr08:37414989..37415153 (+ strand)
Length:	165
Type:	exon

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.08G297000.01 class=Sequence position=Chr08:37413908..37415153 (+ strand)
TCTGTTTCCT CCTTTACCTT GTTGCTGTAA CAATGGCAAG GGTGTCCACA GATCCACTAG CTATTGGGAG AGTCATAGGA
GATGTTCTTG AGTCTTTCAC TCCAAGCATA AAAATGACTG TAACATTCAG TAAGAAGCAA GTCCACAATG GCCATGAACT
CATTCCTTCC ACAGTTACCA CATGCCCCAG GGTTGAGATT GGTGGAGAAG ATTTGAGATC CTTCTTTACA CTGGTATATA
TATATATATA TATGTATATA TATATATATA TATATACGTA TATGAATAAT TTATATTTGC TCTTATTTTC TTTTATTTAT
TGAATAAAAA AGAAGTTTAT ATGATGTGTG TGTTTTTATA TACAGTTAAT TCTTTGGAAA CTTCAGTCAT GTAGGCATGA
AGAAAACTTC AATCATTTGA AAAATAAATG TCTCCTTTTC TCTTTGCAGA TTATGACAGA CCCTGATGTC CCAGGACCTA
GTGACCCTTA TCTGAGAGAA CATCTGCACT GGTACTTTAA CAGATATTGA CTGAAATTAA CCATTTATAT TTTGCTTGAT
TTATTGGCTG AATAATCTGC ATCATCATTA CTTCAAAACC AAACCAAGGG AAGGAAAAAC TCTGAAACAG TAAACTTAGA
ACAATTCGTG CCTGGAATGA ACTAATTATT CGGAGGTCCC AAGCAATGCC ATCCAGAATT TGGGGTAAAT TAATGTTAAG
AAAATTAAAA TGAAATATTT TGGAATATGA AGATATATAT TTTAAAACAT AAAATATCAA TTCTATGCAC CAAAATGGTT
TTGGATGAAG GGTTATAGAA GTTCTAAGTT CTAACCAAAG ACCTAATTTT ACTGTGCGTG TGTATAAATA TATAGACAGC
CATTACTGTG CAAAGCAAAG CAATTTTCAG GTTAGAACCT GGTTGATATT GTGCCCTTTT GCAGGATGGT GACAGACATA
CCAGGCACAA CAAATGCCTC ATTTGGTAAA TTTATATTCA TTTAAGATCT ACTAGAAATA AAAAAATGTA TGGTCAGAAA
TATAGTTAAT CCATATTTCT GGTGCGCTCT TTTTTGGGTA GGGAAAGTGT TGGTGAGCTA TGAAATGCCA AAGCCTAACA
TAGGGATACA CAGGTTTGTG TTTGTCCTGT TCCAGCAAAA ACGTAGGCAG TGTGTTACTC CACCCTCTTC CAGGGACAAC
TTTAACACTC GAAAATTCTC ATCTGAGAAC GACCTCGGCC TCCCTG

[show][hide][copy]TRANSCRIPT

>Vigan.08G297000.01
TCTGTTTCCT CCTTTACCTT GTTGCTGTAA CAATGGCAAG GGTGTCCACA GATCCACTAG CTATTGGGAG AGTCATAGGA
GATGTTCTTG AGTCTTTCAC TCCAAGCATA AAAATGACTG TAACATTCAG TAAGAAGCAA GTCCACAATG GCCATGAACT
CATTCCTTCC ACAGTTACCA CATGCCCCAG GGTTGAGATT GGTGGAGAAG ATTTGAGATC CTTCTTTACA CTGATTATGA
CAGACCCTGA TGTCCCAGGA CCTAGTGACC CTTATCTGAG AGAACATCTG CACTGGATGG TGACAGACAT ACCAGGCACA
ACAAATGCCT CATTTGGGAA AGTGTTGGTG AGCTATGAAA TGCCAAAGCC TAACATAGGG ATACACAGGT TTGTGTTTGT
CCTGTTCCAG CAAAAACGTA GGCAGTGTGT TACTCCACCC TCTTCCAGGG ACAACTTTAA CACTCGAAAA TTCTCATCTG
AGAACGACCT CGGCCTCCCT G