GBrowse Details

Vigan.08G290700.01

Basic Information:
Name: Vigan.08G290700.01
Multiple alignment
Variant Information
Position: Chr08:35568399..35571108 (+ strand)
Length: 2710
Functional Information:
Description: Similar to Uncharacterized protein. [I1LZC4, Glycine max]
InterPro: DnaJ homologue, subfamily C, member 28, conserved domain (IPR018961)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:116.12,50.04,7.70,18.66,8.00,12.54,9.62,8.02
Automatic updates:
Name: NM_001249625 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305523 (LOC100305523), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:35568399..35568478 (+ strand)
Length: 80
Type: five_prime_UTR
Position: Chr08:35568479..35568711 (+ strand)
Length: 233
Type: CDS
Position: Chr08:35570072..35570402 (+ strand)
Length: 331
Type: CDS
Position: Chr08:35570527..35570616 (+ strand)
Length: 90
Type: CDS
Position: Chr08:35570617..35571108 (+ strand)
Length: 492
Type: three_prime_UTR

>Vigan.08G290700.01 class=Sequence position=Chr08:35568399..35571108 (+ strand)
GAACAGCAGT GACAGGAAGT TATTGCAGAA GGAGAAAGGG TGAGAGGCAG AAATCGAGGG CGGTGTTTGA GAGACTAAGC
ATGGCAACGT GTCTTCGCCT CAGGGGATTT ACAACTATCA ATTCGCGCGC TCTCTTCGTT TCCACCACTA GATTCTCCTC
CTCCTCTTCT TCCTCTTCCT CTTCGTCGTC GTCATCGTCT TCCGGTAAGT CTAAAACGGG GAAGAAGTTC ATGGATCGTC
TTACGGCCGT TATCGACGCC GTTCATGATC GTAAACTACC GCCGGAGCTA CGCGGCCAGC GCAACAATGT CAGGTAATAA
TAACGCACTT CCACATGTTT GAAAAGGCCG CTATTCCTGT AATTTGATTT CAATATACTT TTCGAAATTC TTTACGATTG
CGCGCGCTCG CGTGCGTGTA TTCGTGAGAT TAAAATTTTC TGTTCTGAAT CTTTTTAGGT TGCACAAGCA CGATAACAAA
GTTGGCTTGA TCTTTATTGG ATATATCTCT TTATCTCGGC ACTTTCATTG CCTTAGGTTT AAAATGTCAG TGAATATGAA
ATTGATAGAT TCGGCTCTTT GAATGGTTAA AATTAGGATA AAATTTCTGC ACTACAGTAA ATTGTTTAGC TGTTTGAGTG
TAATTCATTA ATCTTCTCTT GCGAGGTGAA TACACGAGTT TAATCTGAAA TTATACATTT GAAATAAAAA CATAAAGAAG
TGGAATTTCA TTCTTGTCTT GGATGTAGCA AATGGAATGA CAAGCAGATG AACTCTACCG TAAAACTCTG CCCTTTGGTA
GATTTGAAAT GCTACTAATA TACGTTGTAA GAGCAGTTTT AATCGTCTAA CAATGGTGGA GTTACGTAAC TCACTTTCAG
TAGGCTCTAC TATGCCTTGT GAAATTTAAG AATTTCAACA AGTTTTTTTG TCTGATGTAC AGCATTTAAG AACTGGAAAC
CGGTTCTACA ATTGTCTCGC TATTCTTAAG AGCAATTAAG AATCGATGAT GATATAAATA ACTGTTGTTT AGTTCTAATA
TAAAAACGAT CATCTCAATT GTTACAATGG GGAAACTGCA TAAGAATTGG TTCTTTAGTT TAAGAATGCT GTGAACAATT
TGTATTGCAG ATGTTGTAAA AGAACATCTT TGGCCTACTT TGTCTTGTTG AATACAGTGA AACGATGTAT AAGATTAATT
TCTTTATGTT AAATATATAT AAAATTTTCT AATTATAAAA GAAATTTGAA CTAAGTCTAA ATTATAAATA AGAAATAATA
ATTAACTAAA GATAAAAGAT AAAGATAAAA GATAAAGATA AAATAAAGAT AATATATCTA ATTGTCTTAA TGAGTCAAAC
TTGTACAATT CTCTCTGAAT ATGGGATTCT CATTTTCAAA ATGAGTGGAA TACTTGTGAT TTTCAGCCAA TGAAAGAGAA
AGTATTAGAA AGTGTTATTA AGTTTGTTAT CAGCATTCCT TGTATAGTAT TTGTGTCATT GGTTTTAACA TCTCCAAATG
GCCAGTTAAG TTGTCCTCAG GACGAGGGAG CCCTGGTGCA CTAGTGGTAC GATTGATAGT GCTACCAATA TTGATTTTGA
GTCAAATACT TTTGGCGACA TTATATTGGT TTACTCCTCA TCTGGTATTT AACACAAACT GGGTGTTGGG CAGGTCAGAA
ACTGATATTA TTAACGTTGT TGAGCAAAGG ATATGGCATT CCATGGAAGA GGGCCAGTTT GAGAACTTGC CAGGCAAAGG
CAAGCCTCTT AAGCTTGACA CAAATCCTCA TGCAGATCCA GCTGAAGACA CCCTGTACCG AATCTTGTCA AAAAATGGTT
GTGCACCAGA GTGGGTCGAG CTTAACAAAG AAATAAGATC TAAAATATCT GAATGGAGGT TGTCCTTGAA GAAAGCTTGG
GCTACTAAAT GTGGAGGAGA GCACTCTGAG TGGGTCGAGA GTTCAGAGAA TTTGAAACTG CAGTTACGAG AAATCAATGA
TAAGGTGAGG TCATCTGCCA TAATGTTTCA TGGGAAATGG AATGGAGAAT TAAATTCTTG GTCCTTTTAT ATTTTTAATT
CCAGTCATAA TTGAATGCTC ATGCAATGGT TCTACATTTT CTTGGCAGGT TTTCCGGTAT AACCTCATTG TGCCTTTTGG
TAGGCAAATG TTTGGCCTTA AGTGGGAGAA AGAGCTAGGT TACTTGGAAG AAAAATGAGA CTTGGTGTGG TTACTTAAAT
TTGAGCCAGT TGGTTCACAT AGTAGAAGAT AAAGATCCTA TTTATTTTCC TGAGGGCGGT CATGCCAGGT AATGATCAAC
TGGTCGATAT TATTCTGTTC GACTATTGTT GATTACATCA ATTTCGTAGC AATGGTTTTA GTCCGGCCAG CCCTTGATAC
TGTTAGGTTA GTTATTATGA TGCCTCTTTC AGGCTTATAG CTATATTTAT ACGGTTCATA ACCCCCTATC TGTGTACCTT
TCCATGTACA ACCTAAGGAA ACAAGAAAAA AAAATAGTGA AATGTACGAG ACAATAACTC TTGTTGTTCC TGCTTCAATA
TACTGGATAT TTGATGTATC CAAGGTTATC AAATTCGAGA GTTTACGTAA ACTCGTGAGA GTTGAATAAA CTCGACTCGT
AAACTTGACT CGTAAATTTG TAAGAGTTTA CTTCAGATGA AAAAAAATTA TATAAATAAT ATCTTAATTC 

>Vigan.08G290700.01
GAACAGCAGT GACAGGAAGT TATTGCAGAA GGAGAAAGGG TGAGAGGCAG AAATCGAGGG CGGTGTTTGA GAGACTAAGC
ATGGCAACGT GTCTTCGCCT CAGGGGATTT ACAACTATCA ATTCGCGCGC TCTCTTCGTT TCCACCACTA GATTCTCCTC
CTCCTCTTCT TCCTCTTCCT CTTCGTCGTC GTCATCGTCT TCCGGTAAGT CTAAAACGGG GAAGAAGTTC ATGGATCGTC
TTACGGCCGT TATCGACGCC GTTCATGATC GTAAACTACC GCCGGAGCTA CGCGGCCAGC GCAACAATGT CAGGTCAGAA
ACTGATATTA TTAACGTTGT TGAGCAAAGG ATATGGCATT CCATGGAAGA GGGCCAGTTT GAGAACTTGC CAGGCAAAGG
CAAGCCTCTT AAGCTTGACA CAAATCCTCA TGCAGATCCA GCTGAAGACA CCCTGTACCG AATCTTGTCA AAAAATGGTT
GTGCACCAGA GTGGGTCGAG CTTAACAAAG AAATAAGATC TAAAATATCT GAATGGAGGT TGTCCTTGAA GAAAGCTTGG
GCTACTAAAT GTGGAGGAGA GCACTCTGAG TGGGTCGAGA GTTCAGAGAA TTTGAAACTG CAGTTACGAG AAATCAATGA
TAAGGTTTTC CGGTATAACC TCATTGTGCC TTTTGGTAGG CAAATGTTTG GCCTTAAGTG GGAGAAAGAG CTAGGTTACT
TGGAAGAAAA ATGAGACTTG GTGTGGTTAC TTAAATTTGA GCCAGTTGGT TCACATAGTA GAAGATAAAG ATCCTATTTA
TTTTCCTGAG GGCGGTCATG CCAGGTAATG ATCAACTGGT CGATATTATT CTGTTCGACT ATTGTTGATT ACATCAATTT
CGTAGCAATG GTTTTAGTCC GGCCAGCCCT TGATACTGTT AGGTTAGTTA TTATGATGCC TCTTTCAGGC TTATAGCTAT
ATTTATACGG TTCATAACCC CCTATCTGTG TACCTTTCCA TGTACAACCT AAGGAAACAA GAAAAAAAAA TAGTGAAATG
TACGAGACAA TAACTCTTGT TGTTCCTGCT TCAATATACT GGATATTTGA TGTATCCAAG GTTATCAAAT TCGAGAGTTT
ACGTAAACTC GTGAGAGTTG AATAAACTCG ACTCGTAAAC TTGACTCGTA AATTTGTAAG AGTTTACTTC AGATGAAAAA
AAATTATATA AATAATATCT TAATTC

>Vigan.08G290700.01
ATGGCAACGT GTCTTCGCCT CAGGGGATTT ACAACTATCA ATTCGCGCGC TCTCTTCGTT TCCACCACTA GATTCTCCTC
CTCCTCTTCT TCCTCTTCCT CTTCGTCGTC GTCATCGTCT TCCGGTAAGT CTAAAACGGG GAAGAAGTTC ATGGATCGTC
TTACGGCCGT TATCGACGCC GTTCATGATC GTAAACTACC GCCGGAGCTA CGCGGCCAGC GCAACAATGT CAGGTCAGAA
ACTGATATTA TTAACGTTGT TGAGCAAAGG ATATGGCATT CCATGGAAGA GGGCCAGTTT GAGAACTTGC CAGGCAAAGG
CAAGCCTCTT AAGCTTGACA CAAATCCTCA TGCAGATCCA GCTGAAGACA CCCTGTACCG AATCTTGTCA AAAAATGGTT
GTGCACCAGA GTGGGTCGAG CTTAACAAAG AAATAAGATC TAAAATATCT GAATGGAGGT TGTCCTTGAA GAAAGCTTGG
GCTACTAAAT GTGGAGGAGA GCACTCTGAG TGGGTCGAGA GTTCAGAGAA TTTGAAACTG CAGTTACGAG AAATCAATGA
TAAGGTTTTC CGGTATAACC TCATTGTGCC TTTTGGTAGG CAAATGTTTG GCCTTAAGTG GGAGAAAGAG CTAGGTTACT
TGGAAGAAAA ATGA

>Vigan.08G290700.01
MATCLRLRGF TTINSRALFV STTRFSSSSS SSSSSSSSSS SGKSKTGKKF MDRLTAVIDA VHDRKLPPEL RGQRNNVRSE
TDIINVVEQR IWHSMEEGQF ENLPGKGKPL KLDTNPHADP AEDTLYRILS KNGCAPEWVE LNKEIRSKIS EWRLSLKKAW
ATKCGGEHSE WVESSENLKL QLREINDKVF RYNLIVPFGR QMFGLKWEKE LGYLEEK*