VIGGS:GBrowse

Vigan.08G258500.01

Basic Information:

Name:	Vigan.08G258500.01 Multiple alignment Variant Information
Position:	Chr08:26095724..26098000 (- strand)
Length:	2277

Functional Information:

Description:	Similar to transmembrane protein 205-like. [XP_004495913.1, Cicer arietinum]
InterPro:	Domain of unknown function DUF4149 (IPR025423)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:1953.60,633.40,171.60,118.07,205.68,604.09,150.03,107.31
Arabidopsis thaliana homolog:	AT3G62580.1

Automatic updates:

Name:	NM_001248784 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100305973 (LOC100305973), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:26095724..26095851 (- strand)
Length:	128
Type:	three_prime_UTR

Position:	Chr08:26095852..26096067 (- strand)
Length:	216
Type:	CDS

Position:	Chr08:26097193..26097412 (- strand)
Length:	220
Type:	CDS

Position:	Chr08:26097618..26097808 (- strand)
Length:	191
Type:	CDS

Position:	Chr08:26097809..26098000 (- strand)
Length:	192
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.08G258500.01 class=Sequence position=Chr08:26095724..26098000 (- strand)
GTAGACCGGA TTTTAATTTC AACAAGGACC AGTAGGTCGG GTTCGGTTTG GTAGGTAGAG AAAGATTTAA TAGCATCTTT
TATTGCTTCA ACTTATTGAC CACCTCGTTC AGTGTTCTGG TCCCTTGGCA GAAGCAGAAT CACACTTACC AATTCACTTA
ATTACTCAGA CACTTTCATC TTCTTCTGCT GCATGGGTTG GCTTAGTCGG TTCATCACCG CCGTGGCTTT CTTAGCCGTC
GGAGTCATAT TCTCACCGGA GACTCTGGGT TCGAAATCAC CCAATCTTTC CACCTACCTC AAACTCGCTC ACCTCCTCAG
TTTCTCCACC GCATTCGGCG CCGCTCTATG GGTCACCTTC ATCGGTGGCA TCATCATGTT TAAGTACGCA TTTTTATCAC
CCGTTTTCTT TTTCTCAATC ATTCTTAGAA ATTTGAGTTT GGGTCCAATT TCACCTTAGG AGGCTTGGGG CTTTTCTTAT
ATACTTCATT TTGAGCGTGA CTAGATGACT TGGGATCTCT GGCAATTTAT GAATTCTTTG TTGTGGCTGT GAAAATTGGT
TATGATTTTG TTGAATTTTG TGATTCAGGA ATCTGCCGAG GCATCAGTTT GGGAACCTGC AGAGCAAGAT GTTTCCGGCG
TATTTCTCGA TGGTGGGGGT TTGTTGCGCC GTATCGGTTG CCTCCTTTGG TTACCTTCAC CCGTGGAAAA CTTCCTCCAC
TACTGAGAGA TACCAGCTTG GGTTTTTGCT CTCTTCCTTT GCGTTCAACC TTACCAACTT GTTTGTCTTC ACACCTATGA
CCATCGAGGT AAAGAAAAAC TTTATTAGCA TGGATTCATC GTTCTCACAA GTAAAACAAA CAAGGTCTTT AAATGCTGCT
CCCTATTTGT TACAATGACC AGAATAATTT GATTGGAAGT GGAAACTTAA AATGGCAGAT TGATTGGTAT AAACTATCAC
TCGGACTATG TTTTTACAGT AAAGACCGAA CTCTTGGTAT GTGTGTATTA TTTTTTATAT GCATGCATAG CAAAATCAGT
TTGCCAAAGT CAAGATGTGT GTTTTTAAAT TTCATGCACC TTCAATAATT TAGCTCTCGC TAAATATGTA AAGCCTTGAG
TGTCAGTGGT TAAAGAAGCT TGATTCCATT TTAAGATCTT ATAAGTTTGA AATGTGTCTA TAAATTTGCA AAAGGAAACT
AGGCATTTGT CGGAATGTTA ATTGTACTAA TGTTTCAGGG GATATGAGGT CGACGTGGTG GTAAGAGTAG AAGGAGGAAG
GGATGGATTG TGAGTTTGAA TTTTCACTGA CAAAAGCTAT TGTATTAACA ACTAAAATTT GTTGATTAAA AAAAAAAAGT
GTGCTGAAAT TTCAGTTGGC TTAAATGAAG GCCAACTAAA TCAGTCAAAT GTATGACTTA TGTTCATCTT AAATTTGATA
AGTTGGCTGC CGGTTTCTTA CCATTCCCAT TTTTTATTTA AAAGATCTAT AACTGAGCTT AATTTATTGT CATTATGTTG
ATTCTGACTT CATTTATTAT TATCATCAAT ATCAGTGCTG ATTACAAGTT TTTTCTGTCT TTCCACAAGG ATTTTGGACA
TTCATATTTT GCTTTAATAT TGCTTTTATT TATTGAGCAG TGTTCCGTGA TTAAAAATCA CATTTATTTT TATACAATCA
TGATTAAATT TTATAATTTG TAGAGGTTTG TAATCTCTTA TTTCTTCTAC TGCTCGCACA GTAACTGTTA TATTCCAGTT
TTCCTCCTTG ATTTTTTTAA AGGTTAATTC TTTTTCACCT GTCGCATTAA TGGCAGTATG TTCTAACTAA TATCTAAGTC
ATGTCAACAT TTTATGCTGT TAAGCTGCCA ACATTCATTA TACTATACTA TTTGTTAGTT TATGAATCAG AGCGTTTTGT
TTTTCTGATG CAGATGATGA AGCAAAGGCA TAAAGTGGAG AGAGAAAACA GTATAGGGGA GGAAGTTGGG TGGTCGAAAA
ATGTGGAAGT TGCTAAGTCA AACCCAAAAC TTAAAGCCAT GAATAAGAAA TTTGGTATGA TTCATGGATT ATCCTCTCTT
GCCAATATAA TGTCTTTTGG GAGTCTAGCA ATACACTCTT GGTACTTGGC AGGAAAAATT GATCTTTGAT TCAGTTTGTG
CCCCCAATTC TATTCTATTA AAGACAAATG AACTCCTGCT GAAGAACAAT ATAAGTGAGG ATCCTAGTGT TCCCTTTATC
TTCCACTTGT TTTACTGTCA AGCAAAATAA GTCTAGC

[show][hide][copy]TRANSCRIPT

>Vigan.08G258500.01
GTAGACCGGA TTTTAATTTC AACAAGGACC AGTAGGTCGG GTTCGGTTTG GTAGGTAGAG AAAGATTTAA TAGCATCTTT
TATTGCTTCA ACTTATTGAC CACCTCGTTC AGTGTTCTGG TCCCTTGGCA GAAGCAGAAT CACACTTACC AATTCACTTA
ATTACTCAGA CACTTTCATC TTCTTCTGCT GCATGGGTTG GCTTAGTCGG TTCATCACCG CCGTGGCTTT CTTAGCCGTC
GGAGTCATAT TCTCACCGGA GACTCTGGGT TCGAAATCAC CCAATCTTTC CACCTACCTC AAACTCGCTC ACCTCCTCAG
TTTCTCCACC GCATTCGGCG CCGCTCTATG GGTCACCTTC ATCGGTGGCA TCATCATGTT TAAGAATCTG CCGAGGCATC
AGTTTGGGAA CCTGCAGAGC AAGATGTTTC CGGCGTATTT CTCGATGGTG GGGGTTTGTT GCGCCGTATC GGTTGCCTCC
TTTGGTTACC TTCACCCGTG GAAAACTTCC TCCACTACTG AGAGATACCA GCTTGGGTTT TTGCTCTCTT CCTTTGCGTT
CAACCTTACC AACTTGTTTG TCTTCACACC TATGACCATC GAGATGATGA AGCAAAGGCA TAAAGTGGAG AGAGAAAACA
GTATAGGGGA GGAAGTTGGG TGGTCGAAAA ATGTGGAAGT TGCTAAGTCA AACCCAAAAC TTAAAGCCAT GAATAAGAAA
TTTGGTATGA TTCATGGATT ATCCTCTCTT GCCAATATAA TGTCTTTTGG GAGTCTAGCA ATACACTCTT GGTACTTGGC
AGGAAAAATT GATCTTTGAT TCAGTTTGTG CCCCCAATTC TATTCTATTA AAGACAAATG AACTCCTGCT GAAGAACAAT
ATAAGTGAGG ATCCTAGTGT TCCCTTTATC TTCCACTTGT TTTACTGTCA AGCAAAATAA GTCTAGC

[show][hide][copy]CDS

>Vigan.08G258500.01
ATGGGTTGGC TTAGTCGGTT CATCACCGCC GTGGCTTTCT TAGCCGTCGG AGTCATATTC TCACCGGAGA CTCTGGGTTC
GAAATCACCC AATCTTTCCA CCTACCTCAA ACTCGCTCAC CTCCTCAGTT TCTCCACCGC ATTCGGCGCC GCTCTATGGG
TCACCTTCAT CGGTGGCATC ATCATGTTTA AGAATCTGCC GAGGCATCAG TTTGGGAACC TGCAGAGCAA GATGTTTCCG
GCGTATTTCT CGATGGTGGG GGTTTGTTGC GCCGTATCGG TTGCCTCCTT TGGTTACCTT CACCCGTGGA AAACTTCCTC
CACTACTGAG AGATACCAGC TTGGGTTTTT GCTCTCTTCC TTTGCGTTCA ACCTTACCAA CTTGTTTGTC TTCACACCTA
TGACCATCGA GATGATGAAG CAAAGGCATA AAGTGGAGAG AGAAAACAGT ATAGGGGAGG AAGTTGGGTG GTCGAAAAAT
GTGGAAGTTG CTAAGTCAAA CCCAAAACTT AAAGCCATGA ATAAGAAATT TGGTATGATT CATGGATTAT CCTCTCTTGC
CAATATAATG TCTTTTGGGA GTCTAGCAAT ACACTCTTGG TACTTGGCAG GAAAAATTGA TCTTTGA

[show][hide][copy]PROTEIN

>Vigan.08G258500.01
MGWLSRFITA VAFLAVGVIF SPETLGSKSP NLSTYLKLAH LLSFSTAFGA ALWVTFIGGI IMFKNLPRHQ FGNLQSKMFP
AYFSMVGVCC AVSVASFGYL HPWKTSSTTE RYQLGFLLSS FAFNLTNLFV FTPMTIEMMK QRHKVERENS IGEEVGWSKN
VEVAKSNPKL KAMNKKFGMI HGLSSLANIM SFGSLAIHSW YLAGKIDL*