GBrowse Details

Vigan.08G250700.01

Basic Information:
Name: Vigan.08G250700.01
Multiple alignment
Variant Information
Position: Chr08:24830899..24832831 (+ strand)
Length: 1933
Functional Information:
Description: Similar to 60S ribosomal protein L22-2-like. [XP_004495952.1, Cicer arietinum]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L22e (IPR002671)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:95.33,96.24,103.78,50.69,148.06,254.30,109.28,68.88
Arabidopsis thaliana homolog: AT3G05560.1
Automatic updates:
Name: NM_001249505 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 60S ribosomal L22 family protein (LOC100500073), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249933 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305544 (LOC100305544), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:24830899..24831011 (+ strand)
Length: 113
Type: five_prime_UTR
Position: Chr08:24831012..24831226 (+ strand)
Length: 215
Type: CDS
Position: Chr08:24832080..24832224 (+ strand)
Length: 145
Type: CDS
Position: Chr08:24832225..24832831 (+ strand)
Length: 607
Type: three_prime_UTR

>Vigan.08G250700.01 class=Sequence position=Chr08:24830899..24832831 (+ strand)
GGACATAAAC CCTAGTTTAT ATTAGTTTCT CTGTGTTTGT GCCCCTGCTG CTTATCACCG TCACGAGGGA GAGAGACTGT
GCGTGTGGCC GAGGGAGAGA GAGAGAAGCG AAAATGAGCG GAGCAAAGGG GAAGAAGAAG GGAGCTAGCT TCGTGATCGA
TTGCGCGAAG CCTGTTGAGG ACAAGATTAT GGACATTGCT TCTCTCGAGA AGTTTCTTCA AGAGAGGATT AAGGTCGGCG
GCAAGGCCGG TGCACTCGGC GATTCCGTTA CTGTCACACG GGAGAAGAGC AAGATCACCG TTACCTCTGA CAGCAACTTC
TCTAAAAGGT TCATTCTTCT TTTTCTTTTT AATATCCTAT TCATCATGCT GCTCTTGTAT GCGTTTTCTT TCGTGGGAGT
GGATTTTTAA CCCGCCATAG CATTTATCAA AATCTTGGGG CTGTATTTTT TTCGTGTGGT TATTCATGGT TAGTTTATGT
CACTGTTTAG TTAGCTGAGA TATTTAAATT TTAGAGAGAA TAGATCTAGC AACCTGTTAT TGACACTGAG ATAAGCGTAT
TAAGAAAAAG TGCTAAAGTA CTTAGCATAA AGCTTCATGT GTTTTTGGGT TTTTCAACCA AGTTTTCTAG CATATGCGTT
AGTAATTTTT GTACTGAAAG ATTGGTAATT GGGTTTAATG CTGAATGTGG TAATAATGTT GTGAAGTGCT TCAGTTATTT
GTATGCTTGT ATTATTTAGT CGTGTACGAT TCAAAAGGTG TTATTTTTAG TGCTTATATT GTGAATAGTC AGATTGCTTA
CCTGTTGTAT GTACGCTCTA TCCTGTTTGT ATTTTGAAAA TATTGCCTTG AGTTCACAAC AGGGATTGCC TTGCTATCAT
GTCTCACTGT AAGCGTCAAT ATTGTGACTT GTGAGAGTCT TTTGAAGAAA ATGGTAATAA GCGTGAAGCC TCAGTTTTGA
TTTGGGATGT TATTGTGATT AAGTATGTGA TAGTGTGGTT TTGCTTTTTA ATGTTTAAAG TGGAAAAATT CAATCTTCCC
GTCCATTTGC TTAGTTTGCT GTAATTTGTT TTCCCTTAAT CCCCCGCATG AATTAAACTC GTTTCTTTGT AACCCAATTT
CTTTGGGTGC TAGTAATTTC CTTTGCTTAT ATTTTTTTCA TTTCATCAAA ACTTTTCTCA GGTATCTGAA ATATTTGACC
AAGAAGTACT TGAAAAAGCA CAATGTGAGG GATTGGCTTC GGGTGATTGC ATCCAACAAG GACAGGAATG TCTATGAGTT
GAGATATTTC AACATTGCTG AGAATGAGGG TGAAGAGGAA GACTGAAGAT CCAATTCTGT CTTGAGGCAT TTCCATTAGG
ATTAGTAATT GTGGAGTCTC ATTTTATCAT GTGTTGTTTG ACTTGTTACT TGTTTAAATA TTCCTGTGTT TAATTTGGAA
TCGACTTTAT TATGCCTTCA TATTAAGTTT TATAGTGATT ATTTGAGAGG TTTTCATTAA AATGTTTTAG TTTTTCAGAT
TAAGGATTCA ATATGTTTGG TCCATCTTAA GCATTGTACT TCCTCGAATG TGAGTGTAAT TGCTGGACAA CACTAAATAT
ATCCAGAGCC ATCATAGAAA GTAGAAATGG CTGGTAGTAT CGATGCAGAA TGATATATAC CATACAAAAA GGCTGAAGAA
ACTGAAAAGG AGGAGAAATC ATTTGATGGA TCGCTTTTGT AATCGATGCA CGTTTAGTGC TAATCTTCAT ATAATCAAGT
TTTACTTCTC TTTGTAGTTT AGAAAAAGAA ATTGAAGGTC CGTAAAAACG TTGCAGAAAT TGGGTCCGTA TAAACGTGGC
TGAAAATGGG TTGTAATAAA CTAGTTTATT GAAGATGTCG TGGTAGGAAA TTGCTGAATT ATAAATGAGT GGAAACATAT
TCGATTATAC TTA

>Vigan.08G250700.01
GGACATAAAC CCTAGTTTAT ATTAGTTTCT CTGTGTTTGT GCCCCTGCTG CTTATCACCG TCACGAGGGA GAGAGACTGT
GCGTGTGGCC GAGGGAGAGA GAGAGAAGCG AAAATGAGCG GAGCAAAGGG GAAGAAGAAG GGAGCTAGCT TCGTGATCGA
TTGCGCGAAG CCTGTTGAGG ACAAGATTAT GGACATTGCT TCTCTCGAGA AGTTTCTTCA AGAGAGGATT AAGGTCGGCG
GCAAGGCCGG TGCACTCGGC GATTCCGTTA CTGTCACACG GGAGAAGAGC AAGATCACCG TTACCTCTGA CAGCAACTTC
TCTAAAAGGT ATCTGAAATA TTTGACCAAG AAGTACTTGA AAAAGCACAA TGTGAGGGAT TGGCTTCGGG TGATTGCATC
CAACAAGGAC AGGAATGTCT ATGAGTTGAG ATATTTCAAC ATTGCTGAGA ATGAGGGTGA AGAGGAAGAC TGAAGATCCA
ATTCTGTCTT GAGGCATTTC CATTAGGATT AGTAATTGTG GAGTCTCATT TTATCATGTG TTGTTTGACT TGTTACTTGT
TTAAATATTC CTGTGTTTAA TTTGGAATCG ACTTTATTAT GCCTTCATAT TAAGTTTTAT AGTGATTATT TGAGAGGTTT
TCATTAAAAT GTTTTAGTTT TTCAGATTAA GGATTCAATA TGTTTGGTCC ATCTTAAGCA TTGTACTTCC TCGAATGTGA
GTGTAATTGC TGGACAACAC TAAATATATC CAGAGCCATC ATAGAAAGTA GAAATGGCTG GTAGTATCGA TGCAGAATGA
TATATACCAT ACAAAAAGGC TGAAGAAACT GAAAAGGAGG AGAAATCATT TGATGGATCG CTTTTGTAAT CGATGCACGT
TTAGTGCTAA TCTTCATATA ATCAAGTTTT ACTTCTCTTT GTAGTTTAGA AAAAGAAATT GAAGGTCCGT AAAAACGTTG
CAGAAATTGG GTCCGTATAA ACGTGGCTGA AAATGGGTTG TAATAAACTA GTTTATTGAA GATGTCGTGG TAGGAAATTG
CTGAATTATA AATGAGTGGA AACATATTCG ATTATACTTA 

>Vigan.08G250700.01
ATGAGCGGAG CAAAGGGGAA GAAGAAGGGA GCTAGCTTCG TGATCGATTG CGCGAAGCCT GTTGAGGACA AGATTATGGA
CATTGCTTCT CTCGAGAAGT TTCTTCAAGA GAGGATTAAG GTCGGCGGCA AGGCCGGTGC ACTCGGCGAT TCCGTTACTG
TCACACGGGA GAAGAGCAAG ATCACCGTTA CCTCTGACAG CAACTTCTCT AAAAGGTATC TGAAATATTT GACCAAGAAG
TACTTGAAAA AGCACAATGT GAGGGATTGG CTTCGGGTGA TTGCATCCAA CAAGGACAGG AATGTCTATG AGTTGAGATA
TTTCAACATT GCTGAGAATG AGGGTGAAGA GGAAGACTGA 

>Vigan.08G250700.01
MSGAKGKKKG ASFVIDCAKP VEDKIMDIAS LEKFLQERIK VGGKAGALGD SVTVTREKSK ITVTSDSNFS KRYLKYLTKK
YLKKHNVRDW LRVIASNKDR NVYELRYFNI AENEGEEED*