GBrowse Details

Vigan.08G248600.01

Basic Information:
Name: Vigan.08G248600.01
Multiple alignment
Variant Information
Position: Chr08:24447763..24449368 (- strand)
Length: 1606
Functional Information:
Description: Similar to Universal stress protein. [B4UW73, Arachis hypogaea]
GO: Biological Process: response to stress (GO:0006950)
InterPro: Universal stress protein A (IPR006015)
UspA (IPR006016)
Rossmann-like alpha/beta/alpha sandwich fold (IPR014729)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:86.47,16.13,200.14,44.72,1546.36,287.07,244.28,66.30
Arabidopsis thaliana homolog: AT2G47710.1
Automatic updates:
Name: NM_001251789 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527357 (LOC100527357), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:24447763..24448215 (- strand)
Length: 453
Type: three_prime_UTR
Position: Chr08:24448216..24448303 (- strand)
Length: 88
Type: CDS
Position: Chr08:24448644..24448765 (- strand)
Length: 122
Type: CDS
Position: Chr08:24448857..24448951 (- strand)
Length: 95
Type: CDS
Position: Chr08:24449031..24449202 (- strand)
Length: 172
Type: CDS
Position: Chr08:24449203..24449368 (- strand)
Length: 166
Type: five_prime_UTR

>Vigan.08G248600.01 class=Sequence position=Chr08:24447763..24449368 (- strand)
CCTGTTTTAT CCTACAGTAT CCGCAAGGGA CGAGCACGTC GTTTTCAGAC AAGGGTTTCA CGAGTAAGCA ACGATTGAAT
AATTGACAAG TGGGTTTGGA TGTGTTTATA AATAATTGGA GTTGTCAAGG GAAGTGGGTA TAATTGTTGT GGTTTTGGTT
TTTGAGATGG CAGGATCGTC AGAGAAGCAA GTGGTGGTGA TCGGAATAGA TGACAGTGAA CAGAGCACGT ACGCTCTCAA
ATGGACCCTT GATCACTTCT TTCCGAGTCC AATCTTCAAG CTGGTTCTCG TTCACTCCAG ACCCACCGCC ACTTCCGCCG
TGGGTCTCGC CGGACCTGGT ACGTCCCTTC TGTTACTTTC TTAACTCTCC TACTTTCTTC TTTAATTCAA TTCAGAACCC
TTCCTTAGTG TATGTAGGTG CCGCTGAGAT ATTGCCTATT GTAGATTCTG ATTTGAGAAA GATTGCGGCC AGAGTCGTTG
ATTCCGCTAG ACAACTTTGC ATCGACAAAT CTGTAATTTC ATTCTTAACC TTCTTCTGTC ACTGTTTTTG ATTCATTCTT
TATCAGTTAA TATAATTGGT AATAAGATCT GATTATTTCT CAGGTAGATG ATGTCACAGC GGAGGTTGTG GAAGGCGATC
CCAGAAATGT TCTTTGTGAT GCTGTGGAAA AGTATCATGC AGCAGTATTG GTTGTGGGTA GTCACGGTTA TGGAGCTATA
AAAAGGTACT TGCTTTGCAG TTTTGGGTGA TTATATTTAG TTGCCAAGTG ATGGGTTGGA GAATGAGATT TGAGTTCATA
TGAAATTTCT TAAAGTGCTT TTAAATTGCT CAAATTTCTT AAATTCTCAA TACCAATAAC ATAAGTTCTG ACAAGTAAGA
GAACTTGTTC ATATCACCGT GCTCTTAATC AGTTTTTAGA TGACACTTTG TTAATTTTTT CTTGTAAATT GGAAAACGTG
ATTATGTGTG ATGTAAAGAT TTTTTAGGCC CAAAACGGGT CCTTGTGTAT ATTCTTCCTG TAGAAGCTAG TCGTCGATTA
ATGTTTTCTT TGTTATATTT TGCAGGGCTG TTTTAGGGAG TGTAAGTGAT TATTGTGCTC ATCATGCTCA CTGCACGGTA
ATGATAGTGA AGAAGCCAAA AATCAAACAT TGATCTGCAT TGTCTGTGTT CGTGATACAA CAATAAACAT AGTCCTTACA
TTAATACTCG TCAAATTCGG AGCTATGCTT CTTCGACTAT GTCATACTTG TTCTTATGAT GTAATAGACT TTACTTCTAA
AGATTGAAAT CATAAAATAC TTCCGCTTTG TTTTGTACAC AATAAGTTAT TGAAGTAAAT ATGTTTGATT AGTTCTTTCC
TGCGCAACTA GCTTGAACAG TTTCTATGAG CAATTTCGTT TTGTTTACTT TTTGATCAGT GGAAGGATCC CGATCGGAGA
TGTGAGGATT TTGGGACAGT AGATGTACTT GTGAATTGTG ATATATGCAA ATGGAGATAG CAAAACTGGT TCAATTTATT
GGGTTGGTTC CTTTAATATG TTAAAAGTAA GGCTTTTTTA TTTTTTATTT CCTACTGAAA GCGTTTGGTT TGTTCATGCA
CGGGAG

>Vigan.08G248600.01
CCTGTTTTAT CCTACAGTAT CCGCAAGGGA CGAGCACGTC GTTTTCAGAC AAGGGTTTCA CGAGTAAGCA ACGATTGAAT
AATTGACAAG TGGGTTTGGA TGTGTTTATA AATAATTGGA GTTGTCAAGG GAAGTGGGTA TAATTGTTGT GGTTTTGGTT
TTTGAGATGG CAGGATCGTC AGAGAAGCAA GTGGTGGTGA TCGGAATAGA TGACAGTGAA CAGAGCACGT ACGCTCTCAA
ATGGACCCTT GATCACTTCT TTCCGAGTCC AATCTTCAAG CTGGTTCTCG TTCACTCCAG ACCCACCGCC ACTTCCGCCG
TGGGTCTCGC CGGACCTGGT GCCGCTGAGA TATTGCCTAT TGTAGATTCT GATTTGAGAA AGATTGCGGC CAGAGTCGTT
GATTCCGCTA GACAACTTTG CATCGACAAA TCTGTAGATG ATGTCACAGC GGAGGTTGTG GAAGGCGATC CCAGAAATGT
TCTTTGTGAT GCTGTGGAAA AGTATCATGC AGCAGTATTG GTTGTGGGTA GTCACGGTTA TGGAGCTATA AAAAGGGCTG
TTTTAGGGAG TGTAAGTGAT TATTGTGCTC ATCATGCTCA CTGCACGGTA ATGATAGTGA AGAAGCCAAA AATCAAACAT
TGATCTGCAT TGTCTGTGTT CGTGATACAA CAATAAACAT AGTCCTTACA TTAATACTCG TCAAATTCGG AGCTATGCTT
CTTCGACTAT GTCATACTTG TTCTTATGAT GTAATAGACT TTACTTCTAA AGATTGAAAT CATAAAATAC TTCCGCTTTG
TTTTGTACAC AATAAGTTAT TGAAGTAAAT ATGTTTGATT AGTTCTTTCC TGCGCAACTA GCTTGAACAG TTTCTATGAG
CAATTTCGTT TTGTTTACTT TTTGATCAGT GGAAGGATCC CGATCGGAGA TGTGAGGATT TTGGGACAGT AGATGTACTT
GTGAATTGTG ATATATGCAA ATGGAGATAG CAAAACTGGT TCAATTTATT GGGTTGGTTC CTTTAATATG TTAAAAGTAA
GGCTTTTTTA TTTTTTATTT CCTACTGAAA GCGTTTGGTT TGTTCATGCA CGGGAG

>Vigan.08G248600.01
ATGGCAGGAT CGTCAGAGAA GCAAGTGGTG GTGATCGGAA TAGATGACAG TGAACAGAGC ACGTACGCTC TCAAATGGAC
CCTTGATCAC TTCTTTCCGA GTCCAATCTT CAAGCTGGTT CTCGTTCACT CCAGACCCAC CGCCACTTCC GCCGTGGGTC
TCGCCGGACC TGGTGCCGCT GAGATATTGC CTATTGTAGA TTCTGATTTG AGAAAGATTG CGGCCAGAGT CGTTGATTCC
GCTAGACAAC TTTGCATCGA CAAATCTGTA GATGATGTCA CAGCGGAGGT TGTGGAAGGC GATCCCAGAA ATGTTCTTTG
TGATGCTGTG GAAAAGTATC ATGCAGCAGT ATTGGTTGTG GGTAGTCACG GTTATGGAGC TATAAAAAGG GCTGTTTTAG
GGAGTGTAAG TGATTATTGT GCTCATCATG CTCACTGCAC GGTAATGATA GTGAAGAAGC CAAAAATCAA ACATTGA

>Vigan.08G248600.01
MAGSSEKQVV VIGIDDSEQS TYALKWTLDH FFPSPIFKLV LVHSRPTATS AVGLAGPGAA EILPIVDSDL RKIAARVVDS
ARQLCIDKSV DDVTAEVVEG DPRNVLCDAV EKYHAAVLVV GSHGYGAIKR AVLGSVSDYC AHHAHCTVMI VKKPKIKH*