VIGGS:GBrowse

Vigan.08G240200.01

Basic Information:

Name:	Vigan.08G240200.01 Multiple alignment Variant Information
Position:	Chr08:22972688..22974681 (- strand)
Length:	1994

Functional Information:

Description:	Similar to methyl-CpG-binding domain-containing protein 4-like isoform X1. [XP_003536387.1, Glycine max]
GO:	Cellular Component: nucleus (GO:0005634)
	Molecular Function: DNA binding (GO:0003677)
	Molecular Function: zinc ion binding (GO:0008270)
InterPro:	Methyl-CpG DNA binding (IPR001739)
	Zinc finger, CW-type (IPR011124)
	DNA-binding domain (IPR016177)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:6.03,3.31,9.57,17.08,15.96,18.23,14.24,12.19
Arabidopsis thaliana homolog:	AT3G63030.1

Automatic updates:

Name:	NM_001252946 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max methyl-CpG-binding domain-containing protein 4-like (LOC100802350), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:22972688..22972909 (- strand)
Length:	222
Type:	three_prime_UTR

Position:	Chr08:22972910..22973401 (- strand)
Length:	492
Type:	CDS

Position:	Chr08:22974574..22974627 (- strand)
Length:	54
Type:	CDS

Position:	Chr08:22974628..22974681 (- strand)
Length:	54
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.08G240200.01 class=Sequence position=Chr08:22972688..22974681 (- strand)
GGAGATGAAA ATTGTATGTG GCACATAGAG TTGAAAGGGA AACAACTTAT GTGAATGAAA GAAATGAAGG GAAGTCAAGA
AATCTCAAAA ACACCATCCT CTTCCAAGGT ACTTCTCATC TCTTTCTTCA ATTAATTTCC TTTCTTTCTC ATGATTTTGC
AGTTAGGGTT TTCCATGCAC GAGATCTCCT GCTTTTCAAC TTTCTTGCTC GATTAATTTT TCTTCACTTT TCATGGATTC
ACTGTAAATA ATTGTTTGTT TCTCGGTCAA TTTTACTGCT TGTTCTTTGT GTTGTAAGTG AATCACATTA TCCTGTCTGT
CATGCAATGA CCATTGTTCT ATTTAATAAA GCTACAAAAT TGATCATGTT TTTCTTTTTT AATGGGTATT ACGTGTGAGT
TGTTCTTCAC TCGCCTGTAT GTGTTGGTTT AGTGAGTAGG GTTTGGATCC CTTAAACATA TAGAGTTGTG TTTGATTCTG
GAATTTACTA TTCACGTCTA TGGAAAAAAA ATATAATAGA CCTATCCTAG GTATTAAGTG CTCAAATGGG CTAGGGATGA
GATGGGACAT CAGAAATTTC AGTAAGTTTA ACCAAATTTG AGGAACTTGG GTGCGACGGG GTTCCACACC TACTTGTACT
AATGTTCCCT AACTTTTCCT GACATTTCAG AAGGAACTCA GATCCTCTGC AAAAATCTGG ATGATTGATA GATTAACATA
ATAGTAGTTA AACAAGAGAG AGAATATCAA TGGTTAATAT ATCTGCTGCA GAGACAGCAG AGGATCTATG TTCTTTCAGA
AGGTGGTACG CTATTGCTCT GTCCTTGTAT GCGCCTGTGG TGGCCCTCGT GTATATGATA TATCAAGAGC TTTATGGCCA
TGATTTTAGC AGTCAAATTT GATGGTAGTT ATGTAAATCA TGTTCCCTGA ATTATTCTCA GTTTAGTGAC CTGGCTGGGG
GTATCATTGG CCAGTTCTGT TAACCAATTG ATTCATAGTC CCTCAAGCAT AAAGCCTGAA AGTTGTAAGC GCTTGGTGAA
TTCGGCTTGT GCAGCAGACA GTTTAGTTAG GAATTGGTAT TTGTTTGATA AACTTTTGTA CATTAAAACT TGCATTACCA
ACCAATGCTT GATGTTTAGA TTGTTTTTCT GCTGCTACGT CTAAAGTGGT TAGTGTTTGT TTCTACCGTT GAAAGGAATT
AAACTAATAG ATTCACTGCA CAGACAAAAG TGATTAAAAA ATTAAAACTA AAGTTTGCAT ATTTGAATGT TGCCAAACAG
AGAACATTGT CAAGTCAGGG TTCAGTGGAT ATATACGCGG CGCAATGCAA AAACTGCTTA AAATGGAGAG TGATTGATAC
ACAGGAAGAG TTTGAAGAGG TTAGAAGTAA AGCCACTGAG GAACCTTTCG TTTGCAGCAG AAAGGCTAAT TGTTCCTGTG
AGGAACCTGC TGATATTGAA TATGATTCCA CTCGAACGTG GGTCATTGAC AAGCCTAACC TCCCAAAAAC TCCACAAGGT
TTTAGGAGGA GCTTGGTACT TAGAAAAGAT TACTCCAAAT TGGACGCTTA CTACGTCACA CCTTCTGGCA AAAAACTGAG
AACCCGCAAT GAGATAGGAG CGTTTCTAAA AGATAATCCA GAATTCAAAG GTGTTAGTGT TACAGATTTT GATTTTTCTT
CCCCAAAGAT AATGCAGGAC ACCATACCAG AGATAATTGA GCAGAAGGAT TCTGCTAACA AGAAAGCTAA GATAGCCAAA
GGTGATGTTT GAGGAATACC ATCTCAAGTT TGCATGATGC AAAGATGTTG ATTCTGGTTT GTTTGTTGGA TATTACTTTA
GAGATTGTTG TAAAATCAAA CCTGACAGCG TATTAAACGA ATTTTGTTCA TGCCCTTGTA TTATATTCTA ATTTTAATTT
TAATGTTAAT GTTGTTATCA GGCTTAAAAT TAACCCAAAT TTACTGCAAC ATTTACGGTT TACAAACATC AAAT

[show][hide][copy]TRANSCRIPT

>Vigan.08G240200.01
GGAGATGAAA ATTGTATGTG GCACATAGAG TTGAAAGGGA AACAACTTAT GTGAATGAAA GAAATGAAGG GAAGTCAAGA
AATCTCAAAA ACACCATCCT CTTCCAAGAG AACATTGTCA AGTCAGGGTT CAGTGGATAT ATACGCGGCG CAATGCAAAA
ACTGCTTAAA ATGGAGAGTG ATTGATACAC AGGAAGAGTT TGAAGAGGTT AGAAGTAAAG CCACTGAGGA ACCTTTCGTT
TGCAGCAGAA AGGCTAATTG TTCCTGTGAG GAACCTGCTG ATATTGAATA TGATTCCACT CGAACGTGGG TCATTGACAA
GCCTAACCTC CCAAAAACTC CACAAGGTTT TAGGAGGAGC TTGGTACTTA GAAAAGATTA CTCCAAATTG GACGCTTACT
ACGTCACACC TTCTGGCAAA AAACTGAGAA CCCGCAATGA GATAGGAGCG TTTCTAAAAG ATAATCCAGA ATTCAAAGGT
GTTAGTGTTA CAGATTTTGA TTTTTCTTCC CCAAAGATAA TGCAGGACAC CATACCAGAG ATAATTGAGC AGAAGGATTC
TGCTAACAAG AAAGCTAAGA TAGCCAAAGG TGATGTTTGA GGAATACCAT CTCAAGTTTG CATGATGCAA AGATGTTGAT
TCTGGTTTGT TTGTTGGATA TTACTTTAGA GATTGTTGTA AAATCAAACC TGACAGCGTA TTAAACGAAT TTTGTTCATG
CCCTTGTATT ATATTCTAAT TTTAATTTTA ATGTTAATGT TGTTATCAGG CTTAAAATTA ACCCAAATTT ACTGCAACAT
TTACGGTTTA CAAACATCAA AT

[show][hide][copy]CDS

>Vigan.08G240200.01
ATGAAAGAAA TGAAGGGAAG TCAAGAAATC TCAAAAACAC CATCCTCTTC CAAGAGAACA TTGTCAAGTC AGGGTTCAGT
GGATATATAC GCGGCGCAAT GCAAAAACTG CTTAAAATGG AGAGTGATTG ATACACAGGA AGAGTTTGAA GAGGTTAGAA
GTAAAGCCAC TGAGGAACCT TTCGTTTGCA GCAGAAAGGC TAATTGTTCC TGTGAGGAAC CTGCTGATAT TGAATATGAT
TCCACTCGAA CGTGGGTCAT TGACAAGCCT AACCTCCCAA AAACTCCACA AGGTTTTAGG AGGAGCTTGG TACTTAGAAA
AGATTACTCC AAATTGGACG CTTACTACGT CACACCTTCT GGCAAAAAAC TGAGAACCCG CAATGAGATA GGAGCGTTTC
TAAAAGATAA TCCAGAATTC AAAGGTGTTA GTGTTACAGA TTTTGATTTT TCTTCCCCAA AGATAATGCA GGACACCATA
CCAGAGATAA TTGAGCAGAA GGATTCTGCT AACAAGAAAG CTAAGATAGC CAAAGGTGAT GTTTGA

[show][hide][copy]PROTEIN

>Vigan.08G240200.01
MKEMKGSQEI SKTPSSSKRT LSSQGSVDIY AAQCKNCLKW RVIDTQEEFE EVRSKATEEP FVCSRKANCS CEEPADIEYD
STRTWVIDKP NLPKTPQGFR RSLVLRKDYS KLDAYYVTPS GKKLRTRNEI GAFLKDNPEF KGVSVTDFDF SSPKIMQDTI
PEIIEQKDSA NKKAKIAKGD V*