GBrowse Details

Vigan.08G227900.01

Basic Information:
Name: Vigan.08G227900.01
Multiple alignment
Variant Information
Position: Chr08:21153280..21157000 (+ strand)
Length: 3721
Functional Information:
Description: Similar to sec-independent protein translocase protein TatB-like isoform X3. [XP_004500099.1, Cicer arietinum]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.54,6.18,4.74,5.27,3.04,3.00,3.46,3.95
Arabidopsis thaliana homolog: AT5G43680.1
Automatic updates:
Name: NM_001355626 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max sec-independent translocase TatB-like protein (LOC100791066), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:21153280..21154820 (+ strand)
Length: 1541
Type: five_prime_UTR
Position: Chr08:21154821..21154881 (+ strand)
Length: 61
Type: CDS
Position: Chr08:21154969..21155090 (+ strand)
Length: 122
Type: CDS
Position: Chr08:21155545..21155680 (+ strand)
Length: 136
Type: CDS
Position: Chr08:21155784..21155839 (+ strand)
Length: 56
Type: CDS
Position: Chr08:21155924..21156119 (+ strand)
Length: 196
Type: CDS
Position: Chr08:21156654..21156763 (+ strand)
Length: 110
Type: CDS
Position: Chr08:21156764..21157000 (+ strand)
Length: 237
Type: three_prime_UTR

>Vigan.08G227900.01 class=Sequence position=Chr08:21153280..21157000 (+ strand)
CTCGAATGAT TGAAAAACTT AATATTCATG TACGTTGATT TCAAGGGTGA TTTTTAGTAA TCATTTGGGC TAAAGGCGTA
TCAAAATTAC CAAAACTGTA ATGAGAAAGG CGCCATCTTT TGCAGTATTT TGCATCAAGA TAATATCCAA ATAAAAGATT
TAGCAGTGAC AAGGCTTATG CAGACTATTC AGACTATGAA AATTGACTTC GTGAGAGAAA GAACAGTCAT TCCACTCTTC
CAATATTTTG TGGACAAAAT GCTCTTCTCT CCTATCTTCT TACGTTTCCA TATTTAATGT CACCATTCTT TCTTTCTAGA
TCTATCTTTG TTAAATATCC TACAAAGAAT TCACTGATCA TTGTGCAGAA TGCACAGACA GCACAAATGT AGTATGGAAA
CTTGTTTTTA ATGTTGTAAT ACTTAGGAGT TGTTCAAAAT GGAAGCTACC GAAATAAATC TATATGCATC AATACATTGA
ACTCTTGGAA CACTGAGACT GAAATTCTTG CTTCAATGTC ATGCATATGC GTATCATTTC TAATTCTCTG AATATCTTTG
GAATCTTGTA TGCATTTTCT CACAATATTT TTATACCATG TCCTTTCTAA TGTGTCATTT TATTAAATTG GACTTTTTTT
TTCTGCTTAT CTTAAGATAA GCCATGAAAA TTTGACATTC TTTATTCTAA TCACTTGAAC CCTCTCAATC ATGGCGGTGA
AGTGTGTTTT ATATATAGGT GCACTGTGGG TTAGAAATTA GCTGTTCTTT AAGTATTAAG TCATTCCATT AATAACTTAT
TTCCTTGTCT CTTTTTCAGT AACTAACTAT TTTCAGTAAA TTTAAAGATG ATTACTGATC GCCATTTTAG TGATAGATAT
AAAACAACTT GCATCATAAA AATTTGACAA TGATGAACAC ATATTCATGC TAATTTTTTA CTTAGGCATC TTCATTATTT
AGTGATGGCA CAGTCTGGTC TACAATTTTC TTCTAAAGCA TCCATTCGTC GTTCTCCAAA TACCACCAAT CCTGCTCATA
CAGTTGGAGA CGGTGGAACA CTGAAGCTAA TACACTCAAC CATCACAAAC TCCTGAACAT GTAGTATAAA GGAAATGGTA
AATAAAGGTG TGTGAAGAAG ACTATTTGAA ATGAGGGAAA AAATTAATGT CTAATAATGT AATTTCATAG ATGGAAGGGT
AAAGTGAATG TAGCAAGTAT GGAGTGTAAA TAGCAAAGGC ATGAAACAGA TCCCAATTTA TCTGGTGGGC TGTTTAGTTC
CCAGATTTGC TATTCTGCTG GGAAAACAAA TCGATTTCCC AAGGCGTTTC TTCTTCTCCC TTTTGTTTTA CCAATGTTCA
TTCATCAGCT AACTCTCTTG TAGGAAGCAC TGAAACTGTA ACAATGTCAT GCTAATTCTA TTCTTTTCAA TTTATGCTTT
CAGGTTAGTT AGCAATTCGA CTATAATTTC CGATTTGCCA TTTTATTGAA CTCTTTAGGG TTTCAAATGA ATTCGATTTT
TCTTCAAAAA GACAGTGAGA AATGCTGGGC TTTTCATATG GAGAAATATT TCTGTTGCTT GGAGCCACTG CTGCTCTGAT
AGGTTGGGTC ATGCTATTGT TACATCTGTT TATCATATGC AAAATTTTAT ATTATTTATA GTACAAATGT GAATTGTTAT
GTGCGATAGG TCCAAAGGAT TTACCAATCA TATCCAGAAC AGCAGGGAGA CTTGCTGGTA GAGCTATTGG ATATGTACAA
TTGGCTCGTG GTCAGTTTGA AAATGTTATG CAGCAATCCC AGGCTCGCCA GGTATTCCCA TTTTCCAAGT TACCAGCAGT
ATTATAAAAC CTGCAGGAAT AAGTTTCTTT GGAGTTTTAT AGATTCTGTG TGTTTTGTTG CATGAAGGCA ATAACTAGTT
GCCTTGAGGT AAATATCGTT AAGCACTTTC CCTAAAGAAA ACCAAACACA CACCAAGTCA TAATATTTAG GGTTGTAAAT
GTCTTATATT TTCTTTTATA AGCAATAACT AATACGTGTA CACAAAATGT CAGAAAATGT CTTATGATGC TTAATTGGAG
AAAAGATAAT TTTGCATTGT AGAATCTTAA CATGTGGTTT ACTTTGAATT TCTTGGACAA TAATGTCAAA TATGAACATA
AAAGTTAGTG AAATATTTAT GCTTCATAGG GGAATCTTTG TCCATTGGTA AGACTTGGTT CTGTTGACAA ACTACTTTTT
ATTGTATTGG CCTATTTTGT CTTAGGTTCA TAAGGAACTG CAAGACACAA TGGCTCAGCT AGATGCTATT CGTCATGAAA
TTCGAAGCAT ATCAATCATA AATCCTGGCC CTTTGACACG AAGATTTGCT GACAATCCTG ACCAGACATC TATCCCAAAT
GGTATTGTTT ACTACCTTGT TTTGAGGTGT AACAGTTTTA TAATCGTTTA CAGATGCAGT GTAGAGATTT TGTTTAATAC
TGTTATCTTT TTTGGATAAT ATAGACTGTA AGAAACCAGA AGATTCTGGA GAGAATCACC CGAATCCCAC TGTTATCAAG
GTTTATGAAC CTAACCCACA AAATGAGACA AGTATATACT AGTATAGGAA CTGAGTGTGC TTACATGCCT ATATATATTT
CCAGGACTCA ACTTCTGTGT CTTCTAATTC ATGCAATATG CAAAATCAAG CAACCATTTA CGCCAGATTT GCAGAGTCCC
CTTCCATAAA GAATGAGTTG TCAGCAATTA GTCCTGAAGT GGTGAAGATA GATGACAAAC TGCAGCTTAC TGTCTTACCC
ATATCCGCTG AAAATGCTGG ACTATTACCA AATCGTGGGG GTATGATACT TTTTGTTTTT TTGGCTTTGC TTATCAAGAT
TTTCTCATGA GTTGGACAAT CACAACTTTT TACTCGGTAT TTTTATGTTT ACAGTTTGTG TGCTATATAG TGTGATCATT
GGTCATGTGA TATTGTTTTG TGATTCCTAT CAATGTATGC CATACATGCA TATGTAAAGG CACTAAAATA TTTAGCTTCT
TTTTACCCAT TACACACCCA GTGGTGTTTT CAGATAAGAT TAGTTAATCT GCAGACTTTT TTCATTTGAA CTGTATTTAG
TTAGCTCGAA GACTCGGAAG TAAAGACTGT TTGCCGAGCT TCATTCATTT GTATACTATG GCACATTTGG CATAGGCTAG
GATATTATAA AAAATGTTAT TTCTTTCATT GCGAAATTTG CAAATTATTT TTCCTTTTTC TTCTTTATGA ATGCCTGATA
GCTTTTTGTC TTGTCTGTCC ATGTTTGACG GGAATCTGTT TGTTTTAGAA CGATACCTGA TATGAAACTT CTTTTGTTTT
TGTTTCATTA ACAGCTGATG TGAAAGGATC TGACATAGTT CTAGAAGCAA TTTTGGAGGC AGAGGTAGCT CATAAAGCAA
AGGAATTTTT TTCGCAGCCC CAAAACCAAG CCAAATATGA TTGATTTGGT AATCCTACAT AAACATAGTA CCTTAAAATC
TGTAGATGCT GAAGTTTCTC GCATTGTTAA ATGCAAAATA ATAATATCGA TTCTTGAATT TTCTTTTCTA GTTCAGGTTA
GAAGTGATTT ATCCTACATA AAAACAGTAA TTCTTAAAAT CTTGAATTTT CTTGAATACC TGGTCCTTTG TACGTTAAAA
GTGATTGAAT TTTAAAATAG TTGATAATTT AGTTCTTAAA A

>Vigan.08G227900.01
CTCGAATGAT TGAAAAACTT AATATTCATG TACGTTGATT TCAAGGGTGA TTTTTAGTAA TCATTTGGGC TAAAGGCGTA
TCAAAATTAC CAAAACTGTA ATGAGAAAGG CGCCATCTTT TGCAGTATTT TGCATCAAGA TAATATCCAA ATAAAAGATT
TAGCAGTGAC AAGGCTTATG CAGACTATTC AGACTATGAA AATTGACTTC GTGAGAGAAA GAACAGTCAT TCCACTCTTC
CAATATTTTG TGGACAAAAT GCTCTTCTCT CCTATCTTCT TACGTTTCCA TATTTAATGT CACCATTCTT TCTTTCTAGA
TCTATCTTTG TTAAATATCC TACAAAGAAT TCACTGATCA TTGTGCAGAA TGCACAGACA GCACAAATGT AGTATGGAAA
CTTGTTTTTA ATGTTGTAAT ACTTAGGAGT TGTTCAAAAT GGAAGCTACC GAAATAAATC TATATGCATC AATACATTGA
ACTCTTGGAA CACTGAGACT GAAATTCTTG CTTCAATGTC ATGCATATGC GTATCATTTC TAATTCTCTG AATATCTTTG
GAATCTTGTA TGCATTTTCT CACAATATTT TTATACCATG TCCTTTCTAA TGTGTCATTT TATTAAATTG GACTTTTTTT
TTCTGCTTAT CTTAAGATAA GCCATGAAAA TTTGACATTC TTTATTCTAA TCACTTGAAC CCTCTCAATC ATGGCGGTGA
AGTGTGTTTT ATATATAGGT GCACTGTGGG TTAGAAATTA GCTGTTCTTT AAGTATTAAG TCATTCCATT AATAACTTAT
TTCCTTGTCT CTTTTTCAGT AACTAACTAT TTTCAGTAAA TTTAAAGATG ATTACTGATC GCCATTTTAG TGATAGATAT
AAAACAACTT GCATCATAAA AATTTGACAA TGATGAACAC ATATTCATGC TAATTTTTTA CTTAGGCATC TTCATTATTT
AGTGATGGCA CAGTCTGGTC TACAATTTTC TTCTAAAGCA TCCATTCGTC GTTCTCCAAA TACCACCAAT CCTGCTCATA
CAGTTGGAGA CGGTGGAACA CTGAAGCTAA TACACTCAAC CATCACAAAC TCCTGAACAT GTAGTATAAA GGAAATGGTA
AATAAAGGTG TGTGAAGAAG ACTATTTGAA ATGAGGGAAA AAATTAATGT CTAATAATGT AATTTCATAG ATGGAAGGGT
AAAGTGAATG TAGCAAGTAT GGAGTGTAAA TAGCAAAGGC ATGAAACAGA TCCCAATTTA TCTGGTGGGC TGTTTAGTTC
CCAGATTTGC TATTCTGCTG GGAAAACAAA TCGATTTCCC AAGGCGTTTC TTCTTCTCCC TTTTGTTTTA CCAATGTTCA
TTCATCAGCT AACTCTCTTG TAGGAAGCAC TGAAACTGTA ACAATGTCAT GCTAATTCTA TTCTTTTCAA TTTATGCTTT
CAGGTTAGTT AGCAATTCGA CTATAATTTC CGATTTGCCA TTTTATTGAA CTCTTTAGGG TTTCAAATGA ATTCGATTTT
TCTTCAAAAA GACAGTGAGA AATGCTGGGC TTTTCATATG GAGAAATATT TCTGTTGCTT GGAGCCACTG CTGCTCTGAT
AGGTCCAAAG GATTTACCAA TCATATCCAG AACAGCAGGG AGACTTGCTG GTAGAGCTAT TGGATATGTA CAATTGGCTC
GTGGTCAGTT TGAAAATGTT ATGCAGCAAT CCCAGGCTCG CCAGGTTCAT AAGGAACTGC AAGACACAAT GGCTCAGCTA
GATGCTATTC GTCATGAAAT TCGAAGCATA TCAATCATAA ATCCTGGCCC TTTGACACGA AGATTTGCTG ACAATCCTGA
CCAGACATCT ATCCCAAATG ACTGTAAGAA ACCAGAAGAT TCTGGAGAGA ATCACCCGAA TCCCACTGTT ATCAAGGACT
CAACTTCTGT GTCTTCTAAT TCATGCAATA TGCAAAATCA AGCAACCATT TACGCCAGAT TTGCAGAGTC CCCTTCCATA
AAGAATGAGT TGTCAGCAAT TAGTCCTGAA GTGGTGAAGA TAGATGACAA ACTGCAGCTT ACTGTCTTAC CCATATCCGC
TGAAAATGCT GGACTATTAC CAAATCGTGG GGCTGATGTG AAAGGATCTG ACATAGTTCT AGAAGCAATT TTGGAGGCAG
AGGTAGCTCA TAAAGCAAAG GAATTTTTTT CGCAGCCCCA AAACCAAGCC AAATATGATT GATTTGGTAA TCCTACATAA
ACATAGTACC TTAAAATCTG TAGATGCTGA AGTTTCTCGC ATTGTTAAAT GCAAAATAAT AATATCGATT CTTGAATTTT
CTTTTCTAGT TCAGGTTAGA AGTGATTTAT CCTACATAAA AACAGTAATT CTTAAAATCT TGAATTTTCT TGAATACCTG
GTCCTTTGTA CGTTAAAAGT GATTGAATTT TAAAATAGTT GATAATTTAG TTCTTAAAA

>Vigan.08G227900.01
ATGCTGGGCT TTTCATATGG AGAAATATTT CTGTTGCTTG GAGCCACTGC TGCTCTGATA GGTCCAAAGG ATTTACCAAT
CATATCCAGA ACAGCAGGGA GACTTGCTGG TAGAGCTATT GGATATGTAC AATTGGCTCG TGGTCAGTTT GAAAATGTTA
TGCAGCAATC CCAGGCTCGC CAGGTTCATA AGGAACTGCA AGACACAATG GCTCAGCTAG ATGCTATTCG TCATGAAATT
CGAAGCATAT CAATCATAAA TCCTGGCCCT TTGACACGAA GATTTGCTGA CAATCCTGAC CAGACATCTA TCCCAAATGA
CTGTAAGAAA CCAGAAGATT CTGGAGAGAA TCACCCGAAT CCCACTGTTA TCAAGGACTC AACTTCTGTG TCTTCTAATT
CATGCAATAT GCAAAATCAA GCAACCATTT ACGCCAGATT TGCAGAGTCC CCTTCCATAA AGAATGAGTT GTCAGCAATT
AGTCCTGAAG TGGTGAAGAT AGATGACAAA CTGCAGCTTA CTGTCTTACC CATATCCGCT GAAAATGCTG GACTATTACC
AAATCGTGGG GCTGATGTGA AAGGATCTGA CATAGTTCTA GAAGCAATTT TGGAGGCAGA GGTAGCTCAT AAAGCAAAGG
AATTTTTTTC GCAGCCCCAA AACCAAGCCA AATATGATTG A

>Vigan.08G227900.01
MLGFSYGEIF LLLGATAALI GPKDLPIISR TAGRLAGRAI GYVQLARGQF ENVMQQSQAR QVHKELQDTM AQLDAIRHEI
RSISIINPGP LTRRFADNPD QTSIPNDCKK PEDSGENHPN PTVIKDSTSV SSNSCNMQNQ ATIYARFAES PSIKNELSAI
SPEVVKIDDK LQLTVLPISA ENAGLLPNRG ADVKGSDIVL EAILEAEVAH KAKEFFSQPQ NQAKYD*