GBrowse Details

Vigan.08G223200.01

Basic Information:
Name: Vigan.08G223200.01
Multiple alignment
Variant Information
Position: Chr08:20285390..20290193 (- strand)
Length: 4804
Functional Information:
Description: Similar to Uncharacterized protein. [I1LYS6, Glycine max]
GO: Cellular Component: integral to membrane (GO:0016021)
InterPro: Tetraspanin (IPR000301)
Tetraspanin/Peripherin (IPR018499)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:30.89,14.49,8.32,13.47,9.74,14.87,10.77,12.26
Arabidopsis thaliana homolog: AT2G20230.1
Automatic updates:
Name: NM_001255178 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100816955 (LOC100816955), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:20285390..20286259 (- strand)
Length: 870
Type: three_prime_UTR
Position: Chr08:20286260..20286301 (- strand)
Length: 42
Type: CDS
Position: Chr08:20287033..20287236 (- strand)
Length: 204
Type: CDS
Position: Chr08:20288874..20288978 (- strand)
Length: 105
Type: CDS
Position: Chr08:20289084..20289164 (- strand)
Length: 81
Type: CDS
Position: Chr08:20289479..20289578 (- strand)
Length: 100
Type: CDS
Position: Chr08:20289845..20290044 (- strand)
Length: 200
Type: CDS
Position: Chr08:20290045..20290193 (- strand)
Length: 149
Type: five_prime_UTR

>Vigan.08G223200.01 class=Sequence position=Chr08:20285390..20290193 (- strand)
AAAGAATAGG AAATAGTGGA AGGCAAAGTG TGGAGGAGAA GGAGATCAGC GAATGTGGTG TGGTCGTCGG AGTTGCCGAT
AAACAAATTC AGTGAAAATC TTGAATTCAG CTTACGCAGG AAAATAATAA GGGAGCCCTA ATAAATACGA TGCGTTTCAA
TACCTGTCAC GTTTCGCTCG CTTTCGTTCT CAAATTCCTC AATTTCCTTC AATCCTTCGT TGGCATTTCC ATTTTGCTCT
ATTCCATATG GATGTTCAAC GAATGGGAGC ATCGTCTTCC TCCTCCTCCT CTTCCTCACG CTTTCGATTT CTATCTCAAT
CTCGCTTCAA TCGTTCTCCC CGCCCCATGG TACCTCTAAT CTTTTTCATT CTCACTGTTT CTGCTAATTA ATTAACCCTT
TCTCATTCGG CTGCTTCAAC TCTATTATTA GAGTACATGC TATCAACTAC TTTCGCGTCG GGAATTAATA CTTAATACGT
CATTGTTCTA CTGTATTAGT TTTTTCTTTT TTTTTAAACT ATGATGAGAT TGCAACAGGT GTGTGAAATG CTTTGGTATA
GATTTAAACG GTTATTTGCT TTTGTTCGTT TCTTATGCTG AACTCTTTTT CGCAGGTTTA TCTACGCTTT CTTGGGAGTG
GGAATTTTGG TGTTATGCAT TTCTCTCTTG GGTTGCATTG CAGCTGAAAT GATTAATGGT TGCTGCTTGT GTTTTGTATC
CCACTCAAAT TTTGAATGTT TATTTTCGTA ATAAAGGTTG GCTGCTCAAG TTTTTAAATT GCGGTCGCAT TTTTGGGTCA
TTGTTTTGTC GTGCTTTTTC GTGTTGCGGG AAATTACATA CTAGGTGACG AAACCACCGT TGGGGACTAT TTTTCAAAAC
TTTTTGGTTT AGAATCTATT GAGCTTTATA GGAGTAGAGT AAACTTAGTG TTGAATGCTT TGAAGTAGTA GCTTTTACTC
TGCTTTTTTT ATTTCAAATG TTGAAAGTTA TTTTTGCTTT TCACTCCTTG ACCCTTTGGA AAATTCTAGT ACACTTTACT
CATCGCGGTG CTTCTTCTGC TGGAAGCTTC TCTGGTGGGA TTCATTGCAC TTGATAGTGA TTGGGAGAAG GTTCTTACTT
TCTTCTTCCC CTACGTTATT TATGGACACA GTTACACTAG TTCGCGTTTG TGTCCCTCTT TTGAGGTCTA TAGTTAATTA
TTATTGTCTT TGCAGGATAT TCCACTTGAT CCAACCGGTC GACTTGACGA GCTTCGAACT TTCATCGAAG ATAATATAGA
TATCTGTACT TGGGTTGGCA TTACTGTTCT CGTGGTTCAG GTACTTTCTT TACTGTTGCT GTTTTGGTGT TAGTATCTGG
TATTTTTTTT CTTCACCTCT CATTGGTAAA TGAATTATAG TCTACTAGTC CATTTTTTAG AGTTAAAGCT TGTTCATGTT
GATGTTCAAC AAAATGCATT ATTATATGTT ATCTGAAGTT GATGTTTCTT TATTAGCACT TTTAAACTTT TTGGAATCGT
CTATAACTTG TATCATTTAG GTGTCAGTCT TCTTTTTTTC AAGCATCTAA CCAGTTATTC AACTATCTTA AGTTGTTATT
TTTAGTTCAT TAACTTTAAT TGTGTAAGGA ATTGGACATA TATATTAATT CAGCTCTGTC TTAAGGTTAT CTTTCACCCT
GTTCACTAGA TTCATGGATG GAGTCAGAGG TGTTATTAAC TTTGTAGAAC ACTACATTCT ATAGAATGCA GTCACTGTAG
CCTTTGGTTA ATTTGGTTTC AGTAATTATA TGTAAAAAAT GTTCATAATA GGAAACAGAA GTTATGTCTT GAATTTGGTT
TTGGAATTTG AATTATTGCA ATTTTTTTTA CTTGACTATA TATGTTAGTA TTATACCCTC CAAACTATTG CTTTGATTAT
TTGGTAGCAT TCTAAACTTC TGTTGGTTAT TTTTTTGTGG TAACCCAACA TGTCCTTTGA AATTCTTGAA TTACTCATTA
TGAATTTATT GTGAAGATTC CAAAATAAGG TAATGAAAAT TCCCATTTTC ATAACATTCA TAAGGTAATA AGGTTTTTAT
TAAAAGAATC ATTGGTAGTA TTGGTGAGTA TGAGAGACAG TGATGAAATT TATGAGTTTT TTCTAAACTA TACTAGCATT
TACAGCAGAA CATTAATTGC TTCCTTTATC TCATAACCTG ATTTGTTTTT TAAGTTAATA CACACTTTTT GAGAAAATTG
TTCATTGCAC TAAATACCAC CGATTGGTGT TATATATAAC CTTTTTTGGA CAAAATAAGT CCTTATTAAA TGTAGTTGTC
AATCTACTTA AGTATTTAGG TGACTTAATA TAAGAGGGTG TTGTTGAACA ATAATTTATG TTTTCTTAGT TTTTTAAAAT
GAAAAATATT TTGAGATATA AAAAAGCTCA TGTGACAGCT GGAGTAATAA ACAAAAATAA TTGGTTATTA AACAAAGAAT
AAAGCATCCA ATGAGCATCT TAGTGATCTT CTAACATGCT TTCTTCTTCC TACAATCCTT TACCTCTTGT TGTCCCTACC
TTAGTTTGGC ATGAGACCGT AACTTCTTTT TTATTTTAGA TTTTAATGCT CTGTTGACAA ATACTGAAAG TGTTCGGAGG
CAGAGTCTGG TATAAATATG CTAATCTTTT TAATTCATTA TGGTTGAAAC AGGAAAACTA GACAAAATTC TACCCTAAAT
TGTGTCTAGT ATACTTCATG TCTGTGTTTT ACATCTTACA AAGACAACCT GAGATTTCTA TAATCATTGG TTTTAAATTT
CCAGCATTTT ACTTGTATCC TCATGAAAAT AGTATCAATA AAAAATCTAA CTATCCATAT AACAACCATG CTGGATAATG
TAAAGTATTT TCTGGATTTT CTTTTATTCC ATTCCCTCCC TAGTGCTTTT GCTCATTTTT CTTGCTGTCA ATCTCAGGCA
TTGGCTCTAC TACTGGCATT AATTCTGCGA GCCACCGTGT CTACCCGGGG GACTGATTTT GATTATGAGG ATGAGTGTGA
TGCTAGGGGT AGAAGTTGGG AACCCCTACT AAATCCTCAA TCTGGCCAAC CATCTGGGTC TGGCAAAGTT GATAATAGAG
GAAATCACTC GGATATTTGG AGCTCACGGA TGAGAGAAAA GGTACGCTGG TCTTAACCTT AATTTCTCTG ATAACCTTTA
ATGGAATTGA GTCTTTCAGT GATAGGAAAT ATAATGTGAT TTGTCAAGAG TTTGTTAAAA AGCTTTTATC ATCAACTATC
AACTAAAAGT TTCATTTTTT TTTTCTGTTT ATCTTTTTCC ATTGGTACAT ATTATTTGTG ACATTTGTTA ATTTCGATAT
TATCATATAG TATTTTGGTT TTAGATTTAT AGTTTTATTA TTCTATTTTG CTTGGATGCT AAACTCTGAT CTGTCATAGA
TAACTGCTTC AAAAAATTAC GTTTTCAGTA GTAGTCTGTT GTCAGTGCAT GAAACTATTT TTATTTATAC TGTTTGAAAC
AGAAAGGATA TGTAAATGTA TTGCACAGAT CACTAAATTT TCCTTTCTAG TTTTGTCTGG GTTTAGAAAC TAGAGGCATT
TCTGTTTATT ACATAGGCTC AACATCAACG CTTTCTCCAT TCTAAGCATG TGGTTCTTAG GATAAAGATC GATAAATTTA
TGGTTTTCCA ACTTGTTTTT TGAGTCTTCA AAAATGCTTG TTTGTCGATC ATTTAGTGAA TTTATATGTA GTCTCTTTTC
TTCTCTCCTT CGTATTTAGT TTGATACATA GGTGTGTCTA CTACTCATGT AATCAAATTA CCGTGGTGCA TGACTGTTAT
TGAAGTGTCT CTTAACATTA GTAATGTAGG AATTACTATT TCATGTTTGC AGTACGGATT GAACCATGGT GATAAGAGCA
CCTACCAACC ATGAATTTCA GGCAATCACC GCTACTAGAC ATCAATCAAT TCAATGATGT GTCGACATTT GCGTACATTC
ATGTATATCT TTGGTTCTAA TGTTGTACTT ACTTTCATAT TTCAGGAAAA ATTATGATGT AAGCAAAATA TAGTGGTGGT
ATATGTGTTG TAAAACCAAA CAAGCTACCG ATTGAAGTTT AAGAGTGTCT TGTACTTAAA TAGCGTAGCA TAAGAGAAAA
ATTAATAACA AAGCTACATC ACAAAGGACC CAATGTAAGC ACCTTCCTCG TGGCTCTACT GCTAGTGCAG TCTGCAGCAC
AGAACTTTAG TTGACATTGC TCAATGGCCA CGCATACAGC TATATACTTT GGATATGGTG CACGTGAAAC ATACATCTCT
CATGTGTCGG TATTCATGTT TTTCTTTTCA CAAAAAACAA ATATCATAAT TTTGTATAAA ATTTCAAAAA GCAAAATTGG
TTGGTAAATA TTGCAGTGTG GAAAGCAAGT ATCTTTGAGA ACTTAGCATG ACTCAACATC AAGTGAAATC GGAGGGCAAA
TTTTCAGTAT CTTATGGTAC TTACGCTTGA TCGCACACGA TATTTTTCTC TCTTAGTTTT ATTTTAGAAA TTAATTTTAG
AATATGAAAA ATGCTAGTTA TATAGGCATA TGATGATTTT AATAAAATGG GAATAATTTT TCCGTGTGAA GATTTCAGTG
AATCAGGACA GTTTGAATCC ACATGACAAA TGGTAGTTAC ATGTTTCTCG GTGGTAAAAT GCTGTGCCAT TATTATTAGC
ACTTGATTTG TACTATTCTG TTTCACACTA GGAGTTTTTA TTTATTTGTT TATTTATTAA TTTCCAGATA AAAGGAAGTG
TTGC

>Vigan.08G223200.01
AAAGAATAGG AAATAGTGGA AGGCAAAGTG TGGAGGAGAA GGAGATCAGC GAATGTGGTG TGGTCGTCGG AGTTGCCGAT
AAACAAATTC AGTGAAAATC TTGAATTCAG CTTACGCAGG AAAATAATAA GGGAGCCCTA ATAAATACGA TGCGTTTCAA
TACCTGTCAC GTTTCGCTCG CTTTCGTTCT CAAATTCCTC AATTTCCTTC AATCCTTCGT TGGCATTTCC ATTTTGCTCT
ATTCCATATG GATGTTCAAC GAATGGGAGC ATCGTCTTCC TCCTCCTCCT CTTCCTCACG CTTTCGATTT CTATCTCAAT
CTCGCTTCAA TCGTTCTCCC CGCCCCATGG TTTATCTACG CTTTCTTGGG AGTGGGAATT TTGGTGTTAT GCATTTCTCT
CTTGGGTTGC ATTGCAGCTG AAATGATTAA TGGTTGCTGC TTGTGTTTTT ACACTTTACT CATCGCGGTG CTTCTTCTGC
TGGAAGCTTC TCTGGTGGGA TTCATTGCAC TTGATAGTGA TTGGGAGAAG GATATTCCAC TTGATCCAAC CGGTCGACTT
GACGAGCTTC GAACTTTCAT CGAAGATAAT ATAGATATCT GTACTTGGGT TGGCATTACT GTTCTCGTGG TTCAGGCATT
GGCTCTACTA CTGGCATTAA TTCTGCGAGC CACCGTGTCT ACCCGGGGGA CTGATTTTGA TTATGAGGAT GAGTGTGATG
CTAGGGGTAG AAGTTGGGAA CCCCTACTAA ATCCTCAATC TGGCCAACCA TCTGGGTCTG GCAAAGTTGA TAATAGAGGA
AATCACTCGG ATATTTGGAG CTCACGGATG AGAGAAAAGT ACGGATTGAA CCATGGTGAT AAGAGCACCT ACCAACCATG
AATTTCAGGC AATCACCGCT ACTAGACATC AATCAATTCA ATGATGTGTC GACATTTGCG TACATTCATG TATATCTTTG
GTTCTAATGT TGTACTTACT TTCATATTTC AGGAAAAATT ATGATGTAAG CAAAATATAG TGGTGGTATA TGTGTTGTAA
AACCAAACAA GCTACCGATT GAAGTTTAAG AGTGTCTTGT ACTTAAATAG CGTAGCATAA GAGAAAAATT AATAACAAAG
CTACATCACA AAGGACCCAA TGTAAGCACC TTCCTCGTGG CTCTACTGCT AGTGCAGTCT GCAGCACAGA ACTTTAGTTG
ACATTGCTCA ATGGCCACGC ATACAGCTAT ATACTTTGGA TATGGTGCAC GTGAAACATA CATCTCTCAT GTGTCGGTAT
TCATGTTTTT CTTTTCACAA AAAACAAATA TCATAATTTT GTATAAAATT TCAAAAAGCA AAATTGGTTG GTAAATATTG
CAGTGTGGAA AGCAAGTATC TTTGAGAACT TAGCATGACT CAACATCAAG TGAAATCGGA GGGCAAATTT TCAGTATCTT
ATGGTACTTA CGCTTGATCG CACACGATAT TTTTCTCTCT TAGTTTTATT TTAGAAATTA ATTTTAGAAT ATGAAAAATG
CTAGTTATAT AGGCATATGA TGATTTTAAT AAAATGGGAA TAATTTTTCC GTGTGAAGAT TTCAGTGAAT CAGGACAGTT
TGAATCCACA TGACAAATGG TAGTTACATG TTTCTCGGTG GTAAAATGCT GTGCCATTAT TATTAGCACT TGATTTGTAC
TATTCTGTTT CACACTAGGA GTTTTTATTT ATTTGTTTAT TTATTAATTT CCAGATAAAA GGAAGTGTTG C

>Vigan.08G223200.01
ATGCGTTTCA ATACCTGTCA CGTTTCGCTC GCTTTCGTTC TCAAATTCCT CAATTTCCTT CAATCCTTCG TTGGCATTTC
CATTTTGCTC TATTCCATAT GGATGTTCAA CGAATGGGAG CATCGTCTTC CTCCTCCTCC TCTTCCTCAC GCTTTCGATT
TCTATCTCAA TCTCGCTTCA ATCGTTCTCC CCGCCCCATG GTTTATCTAC GCTTTCTTGG GAGTGGGAAT TTTGGTGTTA
TGCATTTCTC TCTTGGGTTG CATTGCAGCT GAAATGATTA ATGGTTGCTG CTTGTGTTTT TACACTTTAC TCATCGCGGT
GCTTCTTCTG CTGGAAGCTT CTCTGGTGGG ATTCATTGCA CTTGATAGTG ATTGGGAGAA GGATATTCCA CTTGATCCAA
CCGGTCGACT TGACGAGCTT CGAACTTTCA TCGAAGATAA TATAGATATC TGTACTTGGG TTGGCATTAC TGTTCTCGTG
GTTCAGGCAT TGGCTCTACT ACTGGCATTA ATTCTGCGAG CCACCGTGTC TACCCGGGGG ACTGATTTTG ATTATGAGGA
TGAGTGTGAT GCTAGGGGTA GAAGTTGGGA ACCCCTACTA AATCCTCAAT CTGGCCAACC ATCTGGGTCT GGCAAAGTTG
ATAATAGAGG AAATCACTCG GATATTTGGA GCTCACGGAT GAGAGAAAAG TACGGATTGA ACCATGGTGA TAAGAGCACC
TACCAACCAT GA

>Vigan.08G223200.01
MRFNTCHVSL AFVLKFLNFL QSFVGISILL YSIWMFNEWE HRLPPPPLPH AFDFYLNLAS IVLPAPWFIY AFLGVGILVL
CISLLGCIAA EMINGCCLCF YTLLIAVLLL LEASLVGFIA LDSDWEKDIP LDPTGRLDEL RTFIEDNIDI CTWVGITVLV
VQALALLLAL ILRATVSTRG TDFDYEDECD ARGRSWEPLL NPQSGQPSGS GKVDNRGNHS DIWSSRMREK YGLNHGDKST
YQP*