GBrowse Details

Vigan.08G221100.01

Basic Information:
Name: Vigan.08G221100.01
Multiple alignment
Variant Information
Position: Chr08:20049559..20051104 (+ strand)
Length: 1546
Functional Information:
Description: Similar to Photosystem II reaction center Psb28 protein. [V7BFP1, Phaseolus vulgaris]
GO: Biological Process: photosynthesis (GO:0015979)
Cellular Component: photosystem II (GO:0009523)
Cellular Component: photosystem II oxygen evolving complex (GO:0009654)
Cellular Component: membrane (GO:0016020)
InterPro: Photosystem II Psb28, class 1 (IPR005610)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.14,1.68,50.84,138.53,1.16,77.04,5.52,92.50
Automatic updates:
Name: NM_001248876 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306491 (LOC100306491), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:20049559..20049592 (+ strand)
Length: 34
Type: five_prime_UTR
Position: Chr08:20049593..20049665 (+ strand)
Length: 73
Type: CDS
Position: Chr08:20050376..20050842 (+ strand)
Length: 467
Type: CDS
Position: Chr08:20050843..20051104 (+ strand)
Length: 262
Type: three_prime_UTR

>Vigan.08G221100.01 class=Sequence position=Chr08:20049559..20051104 (+ strand)
TTGTTGTGAA CTACATTTCT CTCTCCTTTT GGCAATGGCA GCTCTGCACT CTCTTGCATT GTCCTCTCCG TTCTCCAGCT
CACTTCACAA ACCACGCTCA TACTCAGGTA CCATCACCCT CTTCCTACTT TTCTTCTCTA ACATCACTTT TTCAATAAGG
TTTTTACATC TGAAATCAAT TACTTTATTC CAATTTATCT TGCAAGATTA AGGCCTTTGA ATAATTTTCA ACTGAATTGC
ATCTGTTACG AGACCCTTGG CATTATAGGA GACAAAATAA GAAAACAAGA TTAACAAATG GAGGTCGCAT TGCATTCTTT
TTCTGTGTTT CTGTCTTCTT TTTTTCTTTT AATTGGTGCT TCATTTTTCA TTATACATGT CAGTACAATT TTAGAAATTT
TAGCTCTCAA ACTTCTACGG TTTTGATGTA GTTTCCAGCT TGACCACAAA ACATTGATTG ACCAAACTAT GTCATGTTCT
TGAAGACATG CAAAGAGGTC ATATGTTATT TTGCCTAATT TTAAGAAAAA AGGGGGCTCC TGGTGGTATC TTTTGTTGGT
GATGTTTCAA GTTGTAGAGA AAACTGACAG TAAAACAAAG AATCTACAAT TCTTAACAGA ACAAACACTT TTCTAATGGT
GTCAAGCATA TGAAGTAATG TTAGAAGCCC TTTAGTTTCT TCCAACTACA CTGCATCATT CTATGTTTAA ACCAGTTCTT
GTAATCAGTG AGCCTTCTTA CCCTTGATAC AAAAATATAG AAGTTAGGTT GTTTAAACAT TGAAAAAATA TAAAAGTTAA
TATGTTTGTT TATGCAGTTC CATGTTCAAT TGTTCATCAA AGTAGAAACT CCTCATTCAA TGGGCAAACT TTGCGGATGC
CATATTTGAG GTTACGTATG GTAACACAAA GCAGTGCCAT GCAGATGCCT GTTATGATGA TGTTGAAACC AAAGATACAG
TTCATCCAGG GAACTGATGA GCAAACAATT CCTGATGTGA GGCTGACAAA ATCAAGGGAT GGAACAAATG GCATGGCTAT
CTTCACATTT GATCAACCTT CAGTTTTCGA TTCTTCAGGT GAAATAGGTG ATATCACTGG ATTTTACATG ATTGATGAAG
AAGGAGTCCT TCAGTCAGTT GATGTAAATG CTAAATTTGT GAATGGTAAG CCCTCAATAA TTGAAGCCAA GTACATAATG
CGGAGTCCAA GGGAGTGGGA TAGATTCATG AGATTCATGG AGCGATACTC TAATGCAAAT GGTTTACAAT TCATCAAAAA
ATGAGTTAAT CTTTTATTCT TTTGCCCTTT TATGTGCATG TAACTTCAAT TTGCATACTG ATCATGTCTT TTCTGGCACG
AGATTTTATG AAATTTTGCC TCTCCTTCAA CTTGGAAAGG TCATCATCAT TCAATGACTT CCTTTCTGCT ATTCTGTTTT
GAATAAAGAA ACTGTGCCAG GAAATATGCT ATTCATCATA TGTTTCCTTT TAATAGCTTG TTCATGGATT ATTTTGTAAA
GGCTTAAATC CAATTTTGAT TGCTAT

>Vigan.08G221100.01
TTGTTGTGAA CTACATTTCT CTCTCCTTTT GGCAATGGCA GCTCTGCACT CTCTTGCATT GTCCTCTCCG TTCTCCAGCT
CACTTCACAA ACCACGCTCA TACTCAGTTC CATGTTCAAT TGTTCATCAA AGTAGAAACT CCTCATTCAA TGGGCAAACT
TTGCGGATGC CATATTTGAG GTTACGTATG GTAACACAAA GCAGTGCCAT GCAGATGCCT GTTATGATGA TGTTGAAACC
AAAGATACAG TTCATCCAGG GAACTGATGA GCAAACAATT CCTGATGTGA GGCTGACAAA ATCAAGGGAT GGAACAAATG
GCATGGCTAT CTTCACATTT GATCAACCTT CAGTTTTCGA TTCTTCAGGT GAAATAGGTG ATATCACTGG ATTTTACATG
ATTGATGAAG AAGGAGTCCT TCAGTCAGTT GATGTAAATG CTAAATTTGT GAATGGTAAG CCCTCAATAA TTGAAGCCAA
GTACATAATG CGGAGTCCAA GGGAGTGGGA TAGATTCATG AGATTCATGG AGCGATACTC TAATGCAAAT GGTTTACAAT
TCATCAAAAA ATGAGTTAAT CTTTTATTCT TTTGCCCTTT TATGTGCATG TAACTTCAAT TTGCATACTG ATCATGTCTT
TTCTGGCACG AGATTTTATG AAATTTTGCC TCTCCTTCAA CTTGGAAAGG TCATCATCAT TCAATGACTT CCTTTCTGCT
ATTCTGTTTT GAATAAAGAA ACTGTGCCAG GAAATATGCT ATTCATCATA TGTTTCCTTT TAATAGCTTG TTCATGGATT
ATTTTGTAAA GGCTTAAATC CAATTTTGAT TGCTAT

>Vigan.08G221100.01
ATGGCAGCTC TGCACTCTCT TGCATTGTCC TCTCCGTTCT CCAGCTCACT TCACAAACCA CGCTCATACT CAGTTCCATG
TTCAATTGTT CATCAAAGTA GAAACTCCTC ATTCAATGGG CAAACTTTGC GGATGCCATA TTTGAGGTTA CGTATGGTAA
CACAAAGCAG TGCCATGCAG ATGCCTGTTA TGATGATGTT GAAACCAAAG ATACAGTTCA TCCAGGGAAC TGATGAGCAA
ACAATTCCTG ATGTGAGGCT GACAAAATCA AGGGATGGAA CAAATGGCAT GGCTATCTTC ACATTTGATC AACCTTCAGT
TTTCGATTCT TCAGGTGAAA TAGGTGATAT CACTGGATTT TACATGATTG ATGAAGAAGG AGTCCTTCAG TCAGTTGATG
TAAATGCTAA ATTTGTGAAT GGTAAGCCCT CAATAATTGA AGCCAAGTAC ATAATGCGGA GTCCAAGGGA GTGGGATAGA
TTCATGAGAT TCATGGAGCG ATACTCTAAT GCAAATGGTT TACAATTCAT CAAAAAATGA 

>Vigan.08G221100.01
MAALHSLALS SPFSSSLHKP RSYSVPCSIV HQSRNSSFNG QTLRMPYLRL RMVTQSSAMQ MPVMMMLKPK IQFIQGTDEQ
TIPDVRLTKS RDGTNGMAIF TFDQPSVFDS SGEIGDITGF YMIDEEGVLQ SVDVNAKFVN GKPSIIEAKY IMRSPREWDR
FMRFMERYSN ANGLQFIKK*