GBrowse Details

Vigan.08G201800.01

Basic Information:
Name: Vigan.08G201800.01
Multiple alignment
Variant Information
Position: Chr08:17984876..17987012 (+ strand)
Length: 2137
Functional Information:
Description: Similar to zinc finger protein 593. [XP_008462489.1, Cucumis melo]
GO: Cellular Component: nucleus (GO:0005634)
Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: zinc ion binding (GO:0008270)
Molecular Function: metal ion binding (GO:0046872)
InterPro: Zinc finger, C2H2-type matrin (IPR000690)
Zinc finger, U1-type (IPR003604)
Zinc finger, C2H2 (IPR007087)
Zinc finger, double-stranded RNA binding (IPR022755)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:36.69,32.17,24.29,27.65,35.19,28.69,38.19,21.06
Arabidopsis thaliana homolog: AT2G36930.1
Automatic updates:
Name: NM_001248272 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527632 (LOC100527632), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251749 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499707 (LOC100499707), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:17984876..17985102 (+ strand)
Length: 227
Type: five_prime_UTR
Position: Chr08:17985103..17985296 (+ strand)
Length: 194
Type: CDS
Position: Chr08:17985910..17985972 (+ strand)
Length: 63
Type: CDS
Position: Chr08:17986716..17986818 (+ strand)
Length: 103
Type: CDS
Position: Chr08:17986819..17987012 (+ strand)
Length: 194
Type: three_prime_UTR

>Vigan.08G201800.01 class=Sequence position=Chr08:17984876..17987012 (+ strand)
GCAGGAGCCC ATAAACTAAT TAGACTGGGC CAGGTAGTTC AGCAGGCCCA TTTTGACACT CGTGTTTCTC ATACATCAGT
TGATTTTGTG TTAAGAAGAG AGAGATTTGA TTTGAGGCGC CGTCGTTTCA CTCTCCACCA TCATCTTCAG AAGAAAAACC
CTAACAACAA GTTGCAAGGG AAGTGGAATC AGAGCTGTGA AACCCTAACT GTTGTGAAAC GCTAATAATG GGAGGAAAAT
GTCCGCACCG GAACGTGAAG AAAAGAAGAT ATTCTCACAA GACAGCACGC CGAACCAAAT TTGAGTTGAA AGGCGACGAT
ATGGTTTACG CGCAGCTAAA CAAACCCGAT GAAGAGATAA CCCCTTTACC CGTAGACGAA GATTTGCCTG GGATGGGACA
GTACTATTGC CCTCACTGCG AGTAATTTCT TTTTCTTCCT CCTTCTTTGT GTGCTTCTTT TTATCAATAT GATTTACGTT
TATATATTTA TTGATCTTTT AACATGGGAT TGAAAAGTTT GGTGTAGTAG AACACTAAGA TGCCAAGTTT AGGTTATAGG
AATAGAAGAT AAAAAGTGTA CATGTGTAAG AAAATAGAGG ATAGATTCGA GAGAATGGAT AGATTTTAAA AACTTTTCAG
TTTATGGTTT TAAGAACTGA TTTCTAGAAC TTTTTAATTC TGATTATTCA ATAACCTGAT AAGTAGAGTT CCGTGATAAT
GCTGCATTAT TGGAGTGGGT TTATAGTTAG CATCGCTAGC ATTTTTCTTC TTGCTTTTTC AATCTTTTAA CTGAGGTGGG
TTTTTGACTT TCTCAGACCT ATTCAATCCC ATCCCACTTC TCCGTTTTCG AGCAACGTGG GAGAACAAAT TTTTATTTGC
TTTTCTTAAT TCTTAATTGC TTATTCCGTT TTGTTATGAT TTAAGGAATA TGGATACTGA GGTATTCGTC TCCAATCTCC
CTTTTTTTTT TTTGCTTTTT TGGTTGTTGG TTGGTTTCAT GATTAGATTG AGTAATTGAT TTTTATTTGT GCAGTCGGTA
CTTTTCCAAT ATAACTGTGA GGGATGAACA CTTTAAGACC AAACGACACA AGAAGCGGTA TGCTACTTTT TTTTATGTTT
TGTTTTTGAA TCTATGCTAT ATTCTCCCCT TATTTATATT GCTGAAGATT GGTTAAATTT ATAGAATCGC TCGTGTTTTG
CTGTACTATT GTGTTTCATG TATGAGCTTT CAGATATGTG AACATATAAA GCTGATGAAC ACTATGAAAA GAACAAGTCT
TACTTTTTAA TAATAATTGA GTGTAGTTGA ACATAATACG AGTAATTCAA GCTTGTTTAG ATAAAAGATA CTGCATTTAG
AACTTTAATA AAAATAAAAT TGATCCTCAT CTAGTCTCTG TTTTAAAAGG AGTGATCAAA TTAGATGACT CGGAATAGAT
TATGGATGGC AGATAGTTAA CGAAGTCATG AATGTTGAAT AGCTTGATTA ATTACTTACC TCAGTCCCAA TTATTACCTT
AGCTTGTCCT TTCCCTGCTT ATTATACTCA TAAATTATAT TAATATAAGG TGTAAATTCG TATTGCATGT CTATTTATTT
TGGAAAAGTA AAGACGTATA TGTACACACA CACACACATT TATATAAATG AAGTTAGGTG GCTCTATTAA CTAATGAGGA
ATTACTTATC ATCAAATTGT TCTATACTTG TTCAAACCCT TGACTTCACC ATCACACATT AAAGGCTGTT ACATGTATGT
CAATTGAACT GCAAGCACAC TGGCATTTAC ATTTTATAGT AGAATGATAT TGCTTCTAAT ATTACAGTTT CATTTTGTAG
TGTAAAAATA ATGATGGGTC CTGCACCACA TACTCAACTT GATGCCGAAT TAGCTGCAGG GATGGGTATG CCAGACAATG
GACCAAAGCT GATGTCTATG TAACTTCGTT TTCGGTAGTG GGTAGAAAGA TTGTAACACT ACAAAAGCAA TATTAAATTT
TGAATGCTAT ATTTTTCTTA TTAATTCCTT TGTTTTGTCT AATAGATGAA ATGTTGGAAA ACAACACTTT AGAGAGTTTG
AATTGTAGTT ACTGGTGATT TTGGATAATC GGTCATATGG AATATAGTGG TTTTTGG

>Vigan.08G201800.01
GCAGGAGCCC ATAAACTAAT TAGACTGGGC CAGGTAGTTC AGCAGGCCCA TTTTGACACT CGTGTTTCTC ATACATCAGT
TGATTTTGTG TTAAGAAGAG AGAGATTTGA TTTGAGGCGC CGTCGTTTCA CTCTCCACCA TCATCTTCAG AAGAAAAACC
CTAACAACAA GTTGCAAGGG AAGTGGAATC AGAGCTGTGA AACCCTAACT GTTGTGAAAC GCTAATAATG GGAGGAAAAT
GTCCGCACCG GAACGTGAAG AAAAGAAGAT ATTCTCACAA GACAGCACGC CGAACCAAAT TTGAGTTGAA AGGCGACGAT
ATGGTTTACG CGCAGCTAAA CAAACCCGAT GAAGAGATAA CCCCTTTACC CGTAGACGAA GATTTGCCTG GGATGGGACA
GTACTATTGC CCTCACTGCG ATCGGTACTT TTCCAATATA ACTGTGAGGG ATGAACACTT TAAGACCAAA CGACACAAGA
AGCGTGTAAA AATAATGATG GGTCCTGCAC CACATACTCA ACTTGATGCC GAATTAGCTG CAGGGATGGG TATGCCAGAC
AATGGACCAA AGCTGATGTC TATGTAACTT CGTTTTCGGT AGTGGGTAGA AAGATTGTAA CACTACAAAA GCAATATTAA
ATTTTGAATG CTATATTTTT CTTATTAATT CCTTTGTTTT GTCTAATAGA TGAAATGTTG GAAAACAACA CTTTAGAGAG
TTTGAATTGT AGTTACTGGT GATTTTGGAT AATCGGTCAT ATGGAATATA GTGGTTTTTG G

>Vigan.08G201800.01
ATGGGAGGAA AATGTCCGCA CCGGAACGTG AAGAAAAGAA GATATTCTCA CAAGACAGCA CGCCGAACCA AATTTGAGTT
GAAAGGCGAC GATATGGTTT ACGCGCAGCT AAACAAACCC GATGAAGAGA TAACCCCTTT ACCCGTAGAC GAAGATTTGC
CTGGGATGGG ACAGTACTAT TGCCCTCACT GCGATCGGTA CTTTTCCAAT ATAACTGTGA GGGATGAACA CTTTAAGACC
AAACGACACA AGAAGCGTGT AAAAATAATG ATGGGTCCTG CACCACATAC TCAACTTGAT GCCGAATTAG CTGCAGGGAT
GGGTATGCCA GACAATGGAC CAAAGCTGAT GTCTATGTAA 

>Vigan.08G201800.01
MGGKCPHRNV KKRRYSHKTA RRTKFELKGD DMVYAQLNKP DEEITPLPVD EDLPGMGQYY CPHCDRYFSN ITVRDEHFKT
KRHKKRVKIM MGPAPHTQLD AELAAGMGMP DNGPKLMSM*