GBrowse Details

Vigan.08G200400.01

Basic Information:
Name: Vigan.08G200400.01
Multiple alignment
Variant Information
Position: Chr08:17842395..17844782 (+ strand)
Length: 2388
Functional Information:
Description: Similar to Aminopeptidase-like protein AC3.5. [XP_007027394.1, Theobroma cacao]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:49.97,29.81,22.93,59.31,27.17,47.83,15.38,23.49
Arabidopsis thaliana homolog: AT3G09860.1
Automatic updates:
Name: NM_001250132 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527253 (LOC100527253), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:17842395..17842574 (+ strand)
Length: 180
Type: five_prime_UTR
Position: Chr08:17842575..17842726 (+ strand)
Length: 152
Type: CDS
Position: Chr08:17843974..17844052 (+ strand)
Length: 79
Type: CDS
Position: Chr08:17844176..17844244 (+ strand)
Length: 69
Type: CDS
Position: Chr08:17844245..17844782 (+ strand)
Length: 538
Type: three_prime_UTR

>Vigan.08G200400.01 class=Sequence position=Chr08:17842395..17844782 (+ strand)
TTCGTTTTCA AAACAGAAGC CCAAGAAAGA AATTGTGGCA CTAATATCAC AGCAAAAACA TGAAACGACG TCGTGAGCAA
ATTTATGTAT GAATAAGAGT GGTTTACATT GAGAGAAGGG GATAAGAGTG GAGCTCTGAA AACTCAGAGA GAAGCAAAGC
AGAGAAAGGA GAGAAGAAGA ATGGAAAAGT ACTTCGGAAA CGCTTATCGC GGTGACCCGG GCGTGCCCCA TGCGGACCCG
GATCGGTTTG TCAACATTTG GATTGGATCC GCTGCCTTCT CTGTTCTCAC ATACTTCAAT CCCTATATGT GGACGCTTTC
TAATCAGTTC AAGTACCATT TTCTTTTCGT CTTCTCTTTT TGTGTTCTTT TCTGTTATTT CAAACTTCGA GTATAGACGT
CACAGTACGA TTGAATTGAA CTTTGTTTAG GTAATGCTTA GATTATCTTT TTTGTTTACT GAATTGTTTT GCTAGGGATT
ACTCTTCAGA CCACAGTCAA TACTCTATAG TGTGACTGTA ATCAGTTATA GTTATAACTT ATTATATATG TTATTGATTA
TTGAAATAGT TTATTTCTTA CCGTTATTCC AAATAAGACC CTTGGTATTC AATGTATATT GGGTGCATTG TTTAATCATA
TGCAAAAATA ACAATTAAGG AGTTTTATAG TCCCTTCACA ATGTATGTGT CACTTGTATT TACGCCCAAG AATTTCTAGT
GATTTGTGTT TGTTTGGATG AACTTCACCA TAAACAATTC TAAAGAAAAA TATAAGAAAG AAAAAATCAA AGTGACTTTT
TCTTAAATTA AAATTAGATT GTGCATAAGT TAAGAATAAA TTTTAGAGAA ACTATGTGAG AAAGTTTCTA CGAATTACCA
TGTGCATAAA CTAATTTTAG CTTGTAGAGA AGCCAATTTT AATTTTTCTT CTATGGAGAA ATTCATCCAA ACAGGCCTCA
GTCTGATGGT ATTCTGTTGG GCTTACCTAT TGGATGGAGT GGCTTGCAAT GGACTGTAGG TTTATCTTTT ACACACAAAA
GTTAGGTCTT CTAGTCGTGT TTTCATGTTT GTTTTGGTTG TATGTATGTG TACAGGAAGG TGTGAAGGCT CACTGTCCTA
TATGATTCAT TTTTCTTTCT TTTCCTCCAT TCCAATCTAA ACCTGATGAC TTTGAAAGAG GTATGGAGGG AGTTCTTTAT
TCTAGGTTTG AATACAGCCA TGAAGGAAGA ATGTCATTTT CATATCTCAT ACAAAAACGA GTTAAATGGT GAAAATAGAC
AACTGAAATA TATTCTATTC TCCTCCTAAA GTTTCAAGAA AAAGTGAACA AGATAAAAGG GACTCATCTA TTTCTGTACG
CATTTGTGGG ATATTGAAGC ATAGCTATTG TTTGCTTTAA GGTTGACTTG GTTTTCTTCC CGGGATTTTC CCCCATATCC
TGATTATGAT AGTTGAGTAG AATTGACATT CTGCATGCAC CATTTCTCTT CTTTAACTAT TTATTATTTA ATCTTTTGAA
GCTTCTTTTT CGGCATCAAT TCATTTAAAT TACTTAGTCT ATGATCGTTT AATGTACAGC TGGCATGATA AAGCATTTTT
ATTCGAGCAA TATCACTGGA AACAGGCAAG GAAGAAGAAT CAGCCATATG AGTTCTTGGT ATGCTAGTTT ACCGAATGTT
TCTTGAGAGG TTTAGCTGAG CAGAGCTGAT ACTTTTGTTT ACTTTGTGCT TTATTTAATA TGAGGAATTA ATTATCTGTT
AAAAAAATTG TGTTGATGCA GTGGAACAAG ACTTGGGATA AGGTCCACCG AGAACATTAC TACTACAACT GGCCTGTTTA
CTTTCCTTAG GCCCCTTCTG TTTTATTTCT TACAGACTTT GTCCTATCTT TATTTTGTTT GCAACCCTGG ATAAAATTTA
CGTCCCCCTC CCCCACTCCA ATGCTTTTCT CTCATGACTT CACTTTTCTT GTGTTCAGTC CTCTTTTTTA ATAACTACAT
GATTATTCGA ATTACAAACT ATCGAGATAA GTAACTGTAT TCAATTGTTG TGAGCATGTT CTGTTGACCT CCTACAGGGT
TTTATAGAAG CTACTTATAC ACAACTTTGG GGATGATAAT CTTTTTAGTC TTTGGGGGTT TATAGAAGCT ACTTATACTT
ATACACTACT TATACACTGC ATGGCTGTTA AGCATCATTG AACTACAGTC AGTGTAGTGT ATATTTCCCG TCAGTTTAAG
ATACTATCTG GGGAGTTCTG CATAATATAC TTCTGTAAAC AAGTAAAAAA GTTGAAGGGT GAGATGCTAT TAACTCCAAG
GGGACATCTT CTGCATTTGC TAAACTTATG GATGGTTGAG TCCTAAAGAA AATAATCTGA TTCCGTAT

>Vigan.08G200400.01
TTCGTTTTCA AAACAGAAGC CCAAGAAAGA AATTGTGGCA CTAATATCAC AGCAAAAACA TGAAACGACG TCGTGAGCAA
ATTTATGTAT GAATAAGAGT GGTTTACATT GAGAGAAGGG GATAAGAGTG GAGCTCTGAA AACTCAGAGA GAAGCAAAGC
AGAGAAAGGA GAGAAGAAGA ATGGAAAAGT ACTTCGGAAA CGCTTATCGC GGTGACCCGG GCGTGCCCCA TGCGGACCCG
GATCGGTTTG TCAACATTTG GATTGGATCC GCTGCCTTCT CTGTTCTCAC ATACTTCAAT CCCTATATGT GGACGCTTTC
TAATCAGTTC AACTGGCATG ATAAAGCATT TTTATTCGAG CAATATCACT GGAAACAGGC AAGGAAGAAG AATCAGCCAT
ATGAGTTCTT GTGGAACAAG ACTTGGGATA AGGTCCACCG AGAACATTAC TACTACAACT GGCCTGTTTA CTTTCCTTAG
GCCCCTTCTG TTTTATTTCT TACAGACTTT GTCCTATCTT TATTTTGTTT GCAACCCTGG ATAAAATTTA CGTCCCCCTC
CCCCACTCCA ATGCTTTTCT CTCATGACTT CACTTTTCTT GTGTTCAGTC CTCTTTTTTA ATAACTACAT GATTATTCGA
ATTACAAACT ATCGAGATAA GTAACTGTAT TCAATTGTTG TGAGCATGTT CTGTTGACCT CCTACAGGGT TTTATAGAAG
CTACTTATAC ACAACTTTGG GGATGATAAT CTTTTTAGTC TTTGGGGGTT TATAGAAGCT ACTTATACTT ATACACTACT
TATACACTGC ATGGCTGTTA AGCATCATTG AACTACAGTC AGTGTAGTGT ATATTTCCCG TCAGTTTAAG ATACTATCTG
GGGAGTTCTG CATAATATAC TTCTGTAAAC AAGTAAAAAA GTTGAAGGGT GAGATGCTAT TAACTCCAAG GGGACATCTT
CTGCATTTGC TAAACTTATG GATGGTTGAG TCCTAAAGAA AATAATCTGA TTCCGTAT

>Vigan.08G200400.01
ATGGAAAAGT ACTTCGGAAA CGCTTATCGC GGTGACCCGG GCGTGCCCCA TGCGGACCCG GATCGGTTTG TCAACATTTG
GATTGGATCC GCTGCCTTCT CTGTTCTCAC ATACTTCAAT CCCTATATGT GGACGCTTTC TAATCAGTTC AACTGGCATG
ATAAAGCATT TTTATTCGAG CAATATCACT GGAAACAGGC AAGGAAGAAG AATCAGCCAT ATGAGTTCTT GTGGAACAAG
ACTTGGGATA AGGTCCACCG AGAACATTAC TACTACAACT GGCCTGTTTA CTTTCCTTAG 

>Vigan.08G200400.01
MEKYFGNAYR GDPGVPHADP DRFVNIWIGS AAFSVLTYFN PYMWTLSNQF NWHDKAFLFE QYHWKQARKK NQPYEFLWNK
TWDKVHREHY YYNWPVYFP*