GBrowse Details

Vigan.08G196500.01

Basic Information:
Name: Vigan.08G196500.01
Multiple alignment
Variant Information
Position: Chr08:17480336..17484314 (+ strand)
Length: 3979
Functional Information:
Description: Similar to ATP-dependent Clp protease proteolytic subunit. [U5TZI1, Phaseolus vulgaris]
GO: Biological Process: proteolysis (GO:0006508)
Molecular Function: serine-type endopeptidase activity (GO:0004252)
InterPro: ClpP (IPR001907)
ClpP, active site (IPR018215)
Clp protease proteolytic subunit /Translocation-enhancing protein TepA (IPR023562)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:47.02,35.66,58.14,170.56,45.57,77.19,27.15,34.48
Arabidopsis thaliana homolog: AT1G02560.1
Automatic updates:
Name: NM_001255587 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ATP-dependent Clp protease proteolytic subunit 5, chloroplastic-like (LOC100798621), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:17480336..17480519 (+ strand)
Length: 184
Type: five_prime_UTR
Position: Chr08:17480520..17480641 (+ strand)
Length: 122
Type: CDS
Position: Chr08:17481159..17481278 (+ strand)
Length: 120
Type: CDS
Position: Chr08:17481354..17481468 (+ strand)
Length: 115
Type: CDS
Position: Chr08:17481557..17481649 (+ strand)
Length: 93
Type: CDS
Position: Chr08:17481880..17481925 (+ strand)
Length: 46
Type: CDS
Position: Chr08:17482049..17482121 (+ strand)
Length: 73
Type: CDS
Position: Chr08:17483044..17483078 (+ strand)
Length: 35
Type: CDS
Position: Chr08:17483203..17483291 (+ strand)
Length: 89
Type: CDS
Position: Chr08:17483814..17484035 (+ strand)
Length: 222
Type: CDS
Position: Chr08:17484036..17484314 (+ strand)
Length: 279
Type: three_prime_UTR

>Vigan.08G196500.01 class=Sequence position=Chr08:17480336..17484314 (+ strand)
TTTTGACCTG ATTATCATAT ACAGGGAGGC TTTCCTTCAA CACTAACAAA CGCTGGGTTG AGTTCACTGT CGACAAGTTT
TGCCCCAACA CTCAACTCCG CTATCCCTAT TCTTTCTTCT TCTTCTTATT ATTAAACAAA CACTCTCATA CCATTGCACC
TTCCTTCTCC TCCACCCATT AACAATGGCT CACACGTCCC TTTTCACTCC CTCTTCCTCT CTCAGATTCA ACCCTCTTCT
TCTTTCCTCC ACTCCCACTT CTTCTTCTTC TCTTCCGCAC AACCTTTCTT TCCCCACCCT CTCCAGGTAT TTTTTTTTTC
TTTATCAATT TGTTTATGGC ACCCCATGTA CTGCGGTGGT TTTTAAACAC TCAATTGCCG TAAAGTTTAC ATTTTGATGA
CTAATATGCG AGTTTGTGGT TTTTCGATTT GTTACATTTT ATTGCTTGCT TATTTGGTTA TTTTAGAGAA TTATGGACAC
CCGATTTGTG GAAGACGACC CTAAATTTTT ATGCTGATGG GTAAGGGTGA AAGTGAGATT TTGGGTCACT TTTGGGTTGT
GTTTCGAACT GAAAAATGGT TTGATAAATA TAGAATTTGA ATTGTCTGAG TTTTAAAATG ATTAATCTAG GGTGGGTCTG
CTGTGAAGGG TTTTTAAAAT TTTAATAGCT AAAGCTTGAA TTTTTATTAT CTACCTTTTA TCTGTGCTTA AATTTCCCTT
TTTAAAAAGA TTGGCAATTT ATCATGGAAG AGACTAGAGT ATTCTCTGTT ATGCTGGATA TTTTATGTCT ATTAAGGGGA
TGAAGTCTTG CTGCGGTTTG CAGGAAACTA AGGAAATCGG TGGAAGGTAG AAAGATTAAT AAAAATTCTG CTGTGAAGGC
AGTGTATGGT GATCAATTTT GGACACCTGA GAGCAGTTCA CGTCAGGATA TTTGGTCCAT AAGGTAGATT TAGTTCTGTT
ATTAGTTTTA TGTTTTAGGT TTTAGCCTCA TTTATTGACT CGGATAGTGT TCTTGAAGGA GGGATTTGAA AGTCCCATCT
TCCCCTTATT TCCCCACCTA TGCACAAGGA CAAGGGCCAC CTCCTATGGT GCAGGAGCGT TTCCAAAGTG TTATAAGTCA
GCTTTTCCAA TATGTAGGCA ATTTTTACTC TTGTTACTTG AGGTCGAGTA TTCAACTTCT GTTTAATCTG GCTAGTATTA
ATAATGTGTT TTGGTATTTA GAGAATAATT CGTTGTGGTG GAGCTGTTGA TGACGATATG GCAAATATCA TAGTTGCTCA
GCTCCTGTAC CTAGATGCTG TTGATCCTAA CAAGGTTTGT TCTTTGACAT TGAAAACTCA TGGTGTATCT TCTTAATCTT
TCTCCATATA AAAGTTTTCT GTTGAATTTT TGAGCTGATG TTAAATGATT ATAGTTTGGT ATTTCTTCAT TCAGCTGTTA
TTGTTATCTT GAATTTGTAT TTTGGTAATT TTTGTTGTGT AATAAACTCA ATCTTGTTGT GCACGTACTT AGTCAACTAC
CAATTTTCTC ATTATGTTGA ACAGGATATT GTCATGTATG TAAATTCTCC AGGAGGGTCG GTTACAGCTG GTAATTATTT
GAGTTAACTT CTATATTGCA TTGTTTTTAT TATATTCAAT CTACACATGG TTTCAAAAAG AATATTAGTG TATTTCAAAT
GTTAAATGCT TCCTTTGTTA TTTCTTTCCT CAGGTATGGC AATATTTGAT ACAATGAGGC ACATTCGACC TGATGTGTCT
ACTGTCTGTG TTGGATTAGC GGCTAGGTAA CATTTTGTTC TTTCTCCGGA CAATATTACC CTAATGCTGA CAGGTTACTG
ATTATCACCG CCAGTAGAAA GTTAAAAGTT TTATCCCAAT TTGTTCTTGG TGCATGCTGC TGGCAGAACA GACTGATTTA
TTTATTTATG CTGAAAACAC ATGGAGAATT AAGATGATTA ATTGTTAATT ATATTAGATA TTTGGCTGCC ACACTGTATC
ATGTAAATTT ACGTTTTTAA AAACACGAGA TTACAATTTT ATCTGTGTTT CTTTAATTTG GATGGTTGAT CCCTTGATCC
TTTTTCCAAT TTGTATTTTC CCTATCACTA TTGACTTGTA TATCTACCCT GGTAAGGCCA ATTAATAAAA ATAAAATAAG
GCATATCAAT CTGCTCATTT ACTCTTTGGT TTAGTGCAGC CTTGTATCTT GGAATGATAT ATTTCAAATG AGTTTCCACC
GGCTTCAGGA TTAGTCATTT GTCAATGTTG AGAACAAATA GTTTCCCTAT CATGGTGTGC ATTTAAAGGC TGCTGCATTT
CATTTGAAAA AATCTACTCC GTTGGTAGTT GCTATGTGGT TGGTTATATT ATAGCCGTTT TATCCAATCT TCCAGTATGA
TATTAGTTCC CGATACCTTT GCGAAAGTAA AGGGGGTGGA GCTGTGATTT TCCCTCTTAC TTTCATATAG TGAAATGGGA
CTGGTAGTGC TGTTGAAGAT AAATATTAAC TGTTGAATTG AAAGTCTTTA GGCTTTTTGC CTCTGAAAAA ATATTCTTAA
CACTCCCAAG AATTAAAAAT CACATCAATA TTTACAGTTT GAGAATGAAA AGTGAATGAT AGTCAATTAT ATACTACAGT
TATTTATCAT TTCTTGTTGA AGAAAATTTA GTTCCCATTC TTACTTATAT AAACCTTTTC ATGTGCAGTA TGGGAGCTTT
TCTGCTTAGC GCTGGGACCA TTGGTAATAA TTCTTGTAAC TTGAAATCAT TGTATCCTTC TCTTGATGAA TGTGTCATCT
CTACTCCTCC AAAAGTGAAA AAATGCTTCT TTCTAACTTT AAATCCCTTT CTACAAAACC TCTGAAGGAA AGAGATACAG
TTTGCCAAAT TCAAGGATTA TGATTCATCA ACCGCTTGGT GGTGCTCAAG GAGGCCAAAC TGACATAGAT ATTCAGGTAC
AAACCTCATT TTCCTCCTTT TAATTTTTAT TGAACAAATG TCCGATTTAC TTCTAATAGT TTATATACAT TTTCTATCAT
AGAAAACTAA AATATTAGGA TAGTACTTAA ACTCTTTAAT GAATTAATTT AAATCAAGAT GAATGCCTAA TATCGTAGTG
AGTTTCCTAA TAGCCTAAAT TTAAGTATAC AAATATGCTT AGTAATTTCT CTATTCATAC ATTATATTCC ATACCCCTGA
TACTATGATT TCTTTCCTAT ACTACTAACC TGCTATTTAT ATCCCATTTC CTACTATTAT ATATTTGGAA TTATCCAGCA
TTTTTTTAGA TTGTATTGAA TCAAACTGTT CCACTAGTTG TGAGTGTGAA CACCGTTGCA ATAAGTGATA CTGTGTATGA
CACTACAAAA GGAAAGTGTA GAACTTACAT ATTTGTTACT ATTTTGTACA CATCATATAT TCCTAATTTT CCTACAATAT
CTTGTTGGAC ATAACTGATT ATGATTGTAA ATTCTCAGGC TAATGAAATG CTGCATCACA AGGCAAATCT GAATGGATAT
CTCTCCTATC ACACCGGCCA AAGTTTGGAG AAGATTAACC AGGATACAGA CCGTGACTTT TTTATGAGTG CAAAAGAAGC
CAAGGATTAT GGACTAATTG ATGGTGTGAT TATGAATCCT CTCAAAGCTC TCCAGCCATT AGAGGCTGCA GCAGAGGGTA
AAGATCGGGC CAGTGTTTGA GCACCACATT GTTGCACTTT AGTTACCGAG GTAGGGTTAA ACTGTAAGAT GTTTTTGGTT
ACTGAGTTCA ACTGAACTTT TTAACGGATG TTGATATCTG TGTACCTGTA CCAAAATGAG GTCAAATTCA TACTTCTATT
TATTGCTTTA GATTTTATAC TCACAGATGG TTCTTTAATT AATGAATCCT GAATGTAATT TTTCCTTCAC CCTTTCGTCT
GTGATTATCT GATACTGACA TGCTTCGTGC TTCGTTAAAT AATGAAACGA TATGCTACA

>Vigan.08G196500.01
TTTTGACCTG ATTATCATAT ACAGGGAGGC TTTCCTTCAA CACTAACAAA CGCTGGGTTG AGTTCACTGT CGACAAGTTT
TGCCCCAACA CTCAACTCCG CTATCCCTAT TCTTTCTTCT TCTTCTTATT ATTAAACAAA CACTCTCATA CCATTGCACC
TTCCTTCTCC TCCACCCATT AACAATGGCT CACACGTCCC TTTTCACTCC CTCTTCCTCT CTCAGATTCA ACCCTCTTCT
TCTTTCCTCC ACTCCCACTT CTTCTTCTTC TCTTCCGCAC AACCTTTCTT TCCCCACCCT CTCCAGGAAA CTAAGGAAAT
CGGTGGAAGG TAGAAAGATT AATAAAAATT CTGCTGTGAA GGCAGTGTAT GGTGATCAAT TTTGGACACC TGAGAGCAGT
TCACGTCAGG ATATTTGGTC CATAAGGAGG GATTTGAAAG TCCCATCTTC CCCTTATTTC CCCACCTATG CACAAGGACA
AGGGCCACCT CCTATGGTGC AGGAGCGTTT CCAAAGTGTT ATAAGTCAGC TTTTCCAATA TAGAATAATT CGTTGTGGTG
GAGCTGTTGA TGACGATATG GCAAATATCA TAGTTGCTCA GCTCCTGTAC CTAGATGCTG TTGATCCTAA CAAGGATATT
GTCATGTATG TAAATTCTCC AGGAGGGTCG GTTACAGCTG GTATGGCAAT ATTTGATACA ATGAGGCACA TTCGACCTGA
TGTGTCTACT GTCTGTGTTG GATTAGCGGC TAGTATGGGA GCTTTTCTGC TTAGCGCTGG GACCATTGGA AAGAGATACA
GTTTGCCAAA TTCAAGGATT ATGATTCATC AACCGCTTGG TGGTGCTCAA GGAGGCCAAA CTGACATAGA TATTCAGGCT
AATGAAATGC TGCATCACAA GGCAAATCTG AATGGATATC TCTCCTATCA CACCGGCCAA AGTTTGGAGA AGATTAACCA
GGATACAGAC CGTGACTTTT TTATGAGTGC AAAAGAAGCC AAGGATTATG GACTAATTGA TGGTGTGATT ATGAATCCTC
TCAAAGCTCT CCAGCCATTA GAGGCTGCAG CAGAGGGTAA AGATCGGGCC AGTGTTTGAG CACCACATTG TTGCACTTTA
GTTACCGAGG TAGGGTTAAA CTGTAAGATG TTTTTGGTTA CTGAGTTCAA CTGAACTTTT TAACGGATGT TGATATCTGT
GTACCTGTAC CAAAATGAGG TCAAATTCAT ACTTCTATTT ATTGCTTTAG ATTTTATACT CACAGATGGT TCTTTAATTA
ATGAATCCTG AATGTAATTT TTCCTTCACC CTTTCGTCTG TGATTATCTG ATACTGACAT GCTTCGTGCT TCGTTAAATA
ATGAAACGAT ATGCTACA

>Vigan.08G196500.01
ATGGCTCACA CGTCCCTTTT CACTCCCTCT TCCTCTCTCA GATTCAACCC TCTTCTTCTT TCCTCCACTC CCACTTCTTC
TTCTTCTCTT CCGCACAACC TTTCTTTCCC CACCCTCTCC AGGAAACTAA GGAAATCGGT GGAAGGTAGA AAGATTAATA
AAAATTCTGC TGTGAAGGCA GTGTATGGTG ATCAATTTTG GACACCTGAG AGCAGTTCAC GTCAGGATAT TTGGTCCATA
AGGAGGGATT TGAAAGTCCC ATCTTCCCCT TATTTCCCCA CCTATGCACA AGGACAAGGG CCACCTCCTA TGGTGCAGGA
GCGTTTCCAA AGTGTTATAA GTCAGCTTTT CCAATATAGA ATAATTCGTT GTGGTGGAGC TGTTGATGAC GATATGGCAA
ATATCATAGT TGCTCAGCTC CTGTACCTAG ATGCTGTTGA TCCTAACAAG GATATTGTCA TGTATGTAAA TTCTCCAGGA
GGGTCGGTTA CAGCTGGTAT GGCAATATTT GATACAATGA GGCACATTCG ACCTGATGTG TCTACTGTCT GTGTTGGATT
AGCGGCTAGT ATGGGAGCTT TTCTGCTTAG CGCTGGGACC ATTGGAAAGA GATACAGTTT GCCAAATTCA AGGATTATGA
TTCATCAACC GCTTGGTGGT GCTCAAGGAG GCCAAACTGA CATAGATATT CAGGCTAATG AAATGCTGCA TCACAAGGCA
AATCTGAATG GATATCTCTC CTATCACACC GGCCAAAGTT TGGAGAAGAT TAACCAGGAT ACAGACCGTG ACTTTTTTAT
GAGTGCAAAA GAAGCCAAGG ATTATGGACT AATTGATGGT GTGATTATGA ATCCTCTCAA AGCTCTCCAG CCATTAGAGG
CTGCAGCAGA GGGTAAAGAT CGGGCCAGTG TTTGA

>Vigan.08G196500.01
MAHTSLFTPS SSLRFNPLLL SSTPTSSSSL PHNLSFPTLS RKLRKSVEGR KINKNSAVKA VYGDQFWTPE SSSRQDIWSI
RRDLKVPSSP YFPTYAQGQG PPPMVQERFQ SVISQLFQYR IIRCGGAVDD DMANIIVAQL LYLDAVDPNK DIVMYVNSPG
GSVTAGMAIF DTMRHIRPDV STVCVGLAAS MGAFLLSAGT IGKRYSLPNS RIMIHQPLGG AQGGQTDIDI QANEMLHHKA
NLNGYLSYHT GQSLEKINQD TDRDFFMSAK EAKDYGLIDG VIMNPLKALQ PLEAAAEGKD RASV*